Wall clock time and date at job start Wed Apr 1 2020 04:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.46980 * 2 1 4 4 N 1.29933 * 125.37831 * 90.27936 * 3 2 1 5 5 C 1.36065 * 108.47452 * 180.18705 * 4 3 2 6 6 C 1.47433 * 126.44841 * 179.85596 * 5 4 3 7 7 O 1.21604 * 119.99622 * 179.68764 * 6 5 4 8 8 N 1.34778 * 119.99660 * 359.68890 * 6 5 4 9 9 C 1.47169 * 125.64975 * 0.02697 * 8 6 5 10 10 C 1.55343 * 106.96113 * 180.92690 * 9 8 6 11 11 H 1.09004 * 112.36725 * 215.22354 * 10 9 8 12 12 C 1.52997 * 106.42108 * 91.60220 * 10 9 8 13 13 C 1.52592 * 111.05787 * 197.20410 * 12 10 9 14 14 C 1.51912 * 108.63356 * 62.02508 * 13 12 10 15 15 C 1.52832 * 108.83544 * 296.45530 * 14 13 12 16 16 H 1.08998 * 108.96270 * 297.64157 * 15 14 13 17 17 N 1.46496 * 109.02669 * 178.76019 * 15 14 13 18 18 C 1.36945 * 119.99718 * 82.76666 * 17 15 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.50734 * 111.73931 * 58.17784 * 15 14 13 27 27 H 1.09004 * 109.26799 * 186.94137 * 26 15 14 28 28 C 1.47287 * 125.94954 * 180.68197 * 8 6 5 29 29 C 1.36084 * 107.10556 * 359.59733 * 5 4 3 30 30 C 1.50710 * 126.52932 * 180.20508 * 29 5 4 31 31 O 1.34053 * 125.37911 * 270.01851 * 3 2 1 32 32 H 1.08998 * 109.47187 * 300.00176 * 1 2 3 33 33 H 1.08996 * 109.46912 * 60.00439 * 1 2 3 34 34 H 1.09005 * 109.46860 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.47187 * 239.99824 * 2 1 3 36 36 H 1.09001 * 109.47256 * 119.99877 * 2 1 3 37 37 H 1.09000 * 109.96736 * 61.54975 * 9 8 6 38 38 H 1.09005 * 109.96247 * 300.29874 * 9 8 6 39 39 H 1.09000 * 109.16507 * 317.60888 * 12 10 9 40 40 H 1.09001 * 109.16472 * 76.85382 * 12 10 9 41 41 H 1.08997 * 109.68190 * 182.08471 * 13 12 10 42 42 H 1.09004 * 109.67403 * 302.62824 * 13 12 10 43 43 H 1.09005 * 109.97336 * 176.21876 * 14 13 12 44 44 H 1.08997 * 108.76826 * 55.97924 * 14 13 12 45 45 H 0.96996 * 120.00499 * 262.76396 * 17 15 14 46 46 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 47 47 H 1.08999 * 110.84630 * 84.82100 * 28 8 6 48 48 H 1.08999 * 109.92737 * 322.27688 * 28 8 6 49 49 H 1.09000 * 109.46781 * 89.99819 * 30 29 5 50 50 H 1.08995 * 109.46757 * 209.99870 * 30 29 5 51 51 H 1.08996 * 109.46825 * 329.99996 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2879 2.1283 1.0594 5 6 2.7160 3.3578 0.6638 6 6 3.1101 4.4731 1.5438 7 8 3.4821 5.5257 1.0618 8 7 3.0581 4.3259 2.8825 9 6 2.6298 3.1121 3.5960 10 6 2.7148 3.4255 5.1151 11 1 3.0229 2.5593 5.7007 12 6 1.3382 3.9520 5.5258 13 6 1.4073 4.6817 6.8642 14 6 2.3283 5.8806 6.7164 15 6 3.7381 5.3836 6.3983 16 1 4.0980 4.7813 7.2324 17 7 4.6238 6.5376 6.2256 18 6 5.1750 7.1476 7.3208 19 1 4.9563 6.7781 8.3118 20 6 6.0146 8.2408 7.1572 21 7 6.2806 8.6914 5.9495 22 14 6.7658 9.0733 8.6512 23 1 7.6182 10.2064 8.2101 24 1 5.6832 9.5810 9.5316 25 1 7.5939 8.0937 9.3996 26 6 3.7662 4.5503 5.1425 27 1 4.7588 4.1166 5.0207 28 6 3.4059 5.3528 3.8795 29 6 2.7175 3.3624 -0.6970 30 6 3.1209 4.5076 -1.5898 31 8 2.2906 2.1527 -1.0930 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 3.2922 2.2822 3.3496 38 1 1.6039 2.8631 3.3242 39 1 0.9756 4.6397 4.7617 40 1 0.6457 3.1147 5.6110 41 1 0.4103 5.0146 7.1526 42 1 1.8063 4.0127 7.6267 43 1 2.3412 6.4565 7.6418 44 1 1.9646 6.5037 5.8994 45 1 4.8199 6.8697 5.3356 46 1 6.8671 9.4556 5.8353 47 1 2.5572 6.0087 4.0730 48 1 4.2646 5.9290 3.5352 49 1 4.1874 4.4422 -1.8050 50 1 2.5583 4.4571 -2.5220 51 1 2.9087 5.4516 -1.0880 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992832328.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:57 Heat of formation + Delta-G solvation = -11.306846 kcal Electronic energy + Delta-G solvation = -31707.555446 eV Core-core repulsion = 27608.218365 eV Total energy + Delta-G solvation = -4099.337082 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.63209 -40.43609 -38.48989 -35.56506 -35.14846 -34.34018 -33.82314 -31.85496 -31.50531 -30.63261 -28.90428 -27.46708 -26.51942 -25.23512 -24.09696 -23.43813 -22.62467 -21.66974 -21.24959 -20.68682 -19.43481 -18.33360 -17.68209 -17.19861 -16.81148 -16.13184 -15.90605 -15.40742 -15.04220 -14.88533 -14.64048 -14.49047 -13.90183 -13.75961 -13.67221 -13.56666 -13.42104 -13.20425 -12.90229 -12.83663 -12.66998 -12.56523 -12.42445 -12.15214 -11.89879 -11.64564 -11.58737 -11.40750 -11.26180 -10.99744 -10.95749 -10.82068 -10.74832 -10.65709 -10.19242 -10.13061 -9.95138 -9.85284 -9.61191 -9.47507 -8.98786 -8.82025 -8.34786 -6.91190 -5.71054 -3.00400 0.95206 1.87689 2.24832 3.03917 3.32996 3.46989 3.51324 3.52615 3.62699 4.37822 4.44645 4.60603 4.65481 4.68061 4.69231 4.86792 4.95501 4.97059 5.04004 5.23647 5.29608 5.33084 5.38412 5.46727 5.47814 5.52640 5.62686 5.65354 5.66825 5.70170 5.76536 5.85742 5.86829 5.88194 5.93412 5.98340 6.07692 6.11418 6.14981 6.33295 6.36214 6.43776 6.50476 6.58026 6.67902 6.80942 6.96639 7.16881 7.31689 7.66687 7.74087 8.23387 8.46979 9.57907 10.15179 10.49641 11.51294 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.002738 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.191794 B =10225.636060 C =11549.454074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.024 4.024 3 C 0.187 3.813 4 N -0.450 5.450 5 C -0.067 4.067 6 C 0.611 3.389 7 O -0.534 6.534 8 N -0.599 5.599 9 C 0.116 3.884 10 C -0.094 4.094 11 H 0.095 0.905 12 C -0.109 4.109 13 C -0.117 4.117 14 C -0.136 4.136 15 C 0.193 3.807 16 H 0.049 0.951 17 N -0.726 5.726 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.292 1.292 24 H -0.287 1.287 25 H -0.287 1.287 26 C -0.094 4.094 27 H 0.077 0.923 28 C 0.117 3.883 29 C 0.037 3.963 30 C -0.076 4.076 31 O -0.198 6.198 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.074 0.926 48 H 0.084 0.916 49 H 0.092 0.908 50 H 0.078 0.922 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.131 -19.446 -13.101 26.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.062 4.062 3 C -0.022 4.022 4 N -0.179 5.179 5 C -0.187 4.187 6 C 0.398 3.602 7 O -0.412 6.412 8 N -0.330 5.330 9 C -0.007 4.007 10 C -0.113 4.113 11 H 0.113 0.887 12 C -0.146 4.146 13 C -0.155 4.155 14 C -0.176 4.176 15 C 0.083 3.917 16 H 0.067 0.933 17 N -0.367 5.367 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.213 1.213 25 H -0.214 1.214 26 C -0.114 4.114 27 H 0.095 0.905 28 C -0.005 4.005 29 C -0.019 4.019 30 C -0.132 4.132 31 O -0.086 6.086 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.092 0.908 48 H 0.103 0.897 49 H 0.110 0.890 50 H 0.097 0.903 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.896 -19.012 -12.673 26.237 hybrid contribution 0.586 0.770 -0.145 0.979 sum -12.310 -18.242 -12.818 25.468 Atomic orbital electron populations 1.21791 0.93011 1.03019 1.03061 1.20081 0.96890 0.83963 1.05301 1.26257 1.00569 0.96950 0.78400 1.70861 1.15102 1.02488 1.29468 1.21467 1.10736 0.94342 0.92132 1.16285 0.78272 0.85147 0.80484 1.90809 1.48550 1.27492 1.74321 1.48220 1.64502 1.16051 1.04267 1.22399 1.00383 0.86894 0.90975 1.22311 0.95944 0.98669 0.94376 0.88715 1.21530 0.95564 0.99559 0.97993 1.21285 0.99453 0.98176 0.96630 1.22050 0.96934 0.96715 1.01906 1.19540 0.90011 0.88892 0.93304 0.93301 1.42515 1.54404 1.32832 1.06995 1.19173 1.21561 1.08854 0.87391 0.91241 1.24739 1.00734 0.99087 0.96349 1.69657 1.40918 1.27572 1.19820 0.86298 0.78899 0.78982 0.82170 1.21779 1.21335 1.21357 1.21751 0.98714 0.95532 0.95368 0.90490 1.22147 1.01324 0.90471 0.86527 1.23725 0.98077 0.85551 0.94545 1.20605 1.02539 0.92498 0.97575 1.84305 1.63932 1.22305 1.38023 0.91606 0.92206 0.90819 0.88890 0.87414 0.91345 0.90916 0.92166 0.92503 0.92750 0.92282 0.91770 0.92694 0.78163 0.93463 0.90771 0.89729 0.88970 0.90281 0.86797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.89 37.16 0.37 -0.40 16 2 C -0.02 -0.14 6.56 -27.89 -0.18 -0.33 16 3 C 0.19 1.96 7.56 -13.08 -0.10 1.86 16 4 N -0.45 -5.81 8.84 -7.65 -0.07 -5.87 16 5 C -0.07 -0.98 6.83 -83.02 -0.57 -1.55 16 6 C 0.61 10.48 7.85 -12.52 -0.10 10.38 16 7 O -0.53 -10.39 15.08 5.27 0.08 -10.31 16 8 N -0.60 -9.76 3.33 -171.75 -0.57 -10.33 16 9 C 0.12 1.57 4.82 -2.43 -0.01 1.56 16 10 C -0.09 -1.23 3.61 -88.86 -0.32 -1.55 16 11 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 12 C -0.11 -1.37 4.61 -26.94 -0.12 -1.49 16 13 C -0.12 -1.60 5.88 -27.49 -0.16 -1.76 16 14 C -0.14 -2.38 5.24 -27.37 -0.14 -2.52 16 15 C 0.19 3.72 2.49 -69.15 -0.17 3.55 16 16 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 17 N -0.73 -18.00 5.03 -54.62 -0.27 -18.28 16 18 C -0.24 -6.58 9.89 -15.06 -0.15 -6.73 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 22 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C -0.09 -1.57 2.54 -90.76 -0.23 -1.80 16 27 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 28 C 0.12 2.09 5.03 -3.14 -0.02 2.07 16 29 C 0.04 0.47 7.44 -35.08 -0.26 0.21 16 30 C -0.08 -0.76 9.88 36.01 0.36 -0.41 16 31 O -0.20 -2.25 10.73 6.51 0.07 -2.18 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.92 7.74 -51.93 -0.40 0.51 16 38 H 0.07 0.94 7.25 -51.93 -0.38 0.57 16 39 H 0.06 0.83 7.08 -51.93 -0.37 0.46 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.05 1.01 6.79 -51.93 -0.35 0.66 16 45 H 0.38 10.24 6.44 -40.82 -0.26 9.98 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.07 1.36 6.07 -51.93 -0.32 1.05 16 48 H 0.08 1.76 7.39 -51.93 -0.38 1.37 16 49 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.11 1.34 6.48 -51.93 -0.34 1.00 16 LS Contribution 397.85 15.07 6.00 6.00 Total: -1.00 -33.12 397.85 -9.24 -42.36 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -8.26 Total: 8.23 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -1.91 Total: 0.62 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -0.19 Total: -62.28 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.15 Total: -12.49 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.12 -9.24 -42.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992832328.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.051 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds