Wall clock time and date at job start Wed Apr 1 2020 04:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.46980 * 2 1 4 4 N 1.29933 * 125.37831 * 90.27936 * 3 2 1 5 5 C 1.36065 * 108.47452 * 180.18705 * 4 3 2 6 6 C 1.47433 * 126.44841 * 179.85596 * 5 4 3 7 7 O 1.21604 * 119.99622 * 179.68764 * 6 5 4 8 8 N 1.34778 * 119.99660 * 359.68890 * 6 5 4 9 9 C 1.47169 * 125.64975 * 0.02697 * 8 6 5 10 10 C 1.55343 * 106.96113 * 180.92690 * 9 8 6 11 11 H 1.09004 * 112.36725 * 215.22354 * 10 9 8 12 12 C 1.52997 * 106.42108 * 91.60220 * 10 9 8 13 13 C 1.52592 * 111.05787 * 197.20410 * 12 10 9 14 14 C 1.51912 * 108.63356 * 62.02508 * 13 12 10 15 15 C 1.52832 * 108.83544 * 296.45530 * 14 13 12 16 16 H 1.08998 * 108.96270 * 297.64157 * 15 14 13 17 17 N 1.46496 * 109.02669 * 178.76019 * 15 14 13 18 18 C 1.36945 * 119.99718 * 82.76666 * 17 15 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.50734 * 111.73931 * 58.17784 * 15 14 13 27 27 H 1.09004 * 109.26799 * 186.94137 * 26 15 14 28 28 C 1.47287 * 125.94954 * 180.68197 * 8 6 5 29 29 C 1.36084 * 107.10556 * 359.59733 * 5 4 3 30 30 C 1.50710 * 126.52932 * 180.20508 * 29 5 4 31 31 O 1.34053 * 125.37911 * 270.01851 * 3 2 1 32 32 H 1.08998 * 109.47187 * 300.00176 * 1 2 3 33 33 H 1.08996 * 109.46912 * 60.00439 * 1 2 3 34 34 H 1.09005 * 109.46860 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.47187 * 239.99824 * 2 1 3 36 36 H 1.09001 * 109.47256 * 119.99877 * 2 1 3 37 37 H 1.09000 * 109.96736 * 61.54975 * 9 8 6 38 38 H 1.09005 * 109.96247 * 300.29874 * 9 8 6 39 39 H 1.09000 * 109.16507 * 317.60888 * 12 10 9 40 40 H 1.09001 * 109.16472 * 76.85382 * 12 10 9 41 41 H 1.08997 * 109.68190 * 182.08471 * 13 12 10 42 42 H 1.09004 * 109.67403 * 302.62824 * 13 12 10 43 43 H 1.09005 * 109.97336 * 176.21876 * 14 13 12 44 44 H 1.08997 * 108.76826 * 55.97924 * 14 13 12 45 45 H 0.96996 * 120.00499 * 262.76396 * 17 15 14 46 46 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 47 47 H 1.08999 * 110.84630 * 84.82100 * 28 8 6 48 48 H 1.08999 * 109.92737 * 322.27688 * 28 8 6 49 49 H 1.09000 * 109.46781 * 89.99819 * 30 29 5 50 50 H 1.08995 * 109.46757 * 209.99870 * 30 29 5 51 51 H 1.08996 * 109.46825 * 329.99996 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2879 2.1283 1.0594 5 6 2.7160 3.3578 0.6638 6 6 3.1101 4.4731 1.5438 7 8 3.4821 5.5257 1.0618 8 7 3.0581 4.3259 2.8825 9 6 2.6298 3.1121 3.5960 10 6 2.7148 3.4255 5.1151 11 1 3.0229 2.5593 5.7007 12 6 1.3382 3.9520 5.5258 13 6 1.4073 4.6817 6.8642 14 6 2.3283 5.8806 6.7164 15 6 3.7381 5.3836 6.3983 16 1 4.0980 4.7813 7.2324 17 7 4.6238 6.5376 6.2256 18 6 5.1750 7.1476 7.3208 19 1 4.9563 6.7781 8.3118 20 6 6.0146 8.2408 7.1572 21 7 6.2806 8.6914 5.9495 22 14 6.7658 9.0733 8.6512 23 1 7.6182 10.2064 8.2101 24 1 5.6832 9.5810 9.5316 25 1 7.5939 8.0937 9.3996 26 6 3.7662 4.5503 5.1425 27 1 4.7588 4.1166 5.0207 28 6 3.4059 5.3528 3.8795 29 6 2.7175 3.3624 -0.6970 30 6 3.1209 4.5076 -1.5898 31 8 2.2906 2.1527 -1.0930 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 3.2922 2.2822 3.3496 38 1 1.6039 2.8631 3.3242 39 1 0.9756 4.6397 4.7617 40 1 0.6457 3.1147 5.6110 41 1 0.4103 5.0146 7.1526 42 1 1.8063 4.0127 7.6267 43 1 2.3412 6.4565 7.6418 44 1 1.9646 6.5037 5.8994 45 1 4.8199 6.8697 5.3356 46 1 6.8671 9.4556 5.8353 47 1 2.5572 6.0087 4.0730 48 1 4.2646 5.9290 3.5352 49 1 4.1874 4.4422 -1.8050 50 1 2.5583 4.4571 -2.5220 51 1 2.9087 5.4516 -1.0880 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992832328.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:56 Heat of formation + Delta-G solvation = -33.431960 kcal Electronic energy + Delta-G solvation = -31708.514863 eV Core-core repulsion = 27608.218365 eV Total energy + Delta-G solvation = -4100.296499 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.55118 -41.76159 -39.84862 -37.03250 -36.10661 -35.43884 -35.06190 -33.32820 -32.62188 -31.92148 -30.57913 -28.54725 -27.80190 -26.33220 -25.60026 -24.75608 -23.60888 -22.89941 -22.19532 -22.06386 -20.54354 -19.78066 -19.23074 -18.43508 -18.10306 -17.31125 -17.18716 -16.65681 -16.48561 -16.03634 -15.74368 -15.38759 -15.28121 -15.22977 -15.01448 -14.80831 -14.42877 -14.32451 -14.09857 -14.00643 -13.79578 -13.56960 -13.47048 -13.31577 -13.01401 -12.82640 -12.72713 -12.60362 -12.50382 -12.34995 -12.29469 -12.20231 -12.02766 -11.97622 -11.90127 -11.81330 -11.30507 -11.25417 -11.14944 -10.98815 -10.73367 -10.01715 -9.61879 -8.98570 -7.91617 -5.20631 -0.05320 0.91692 1.37603 1.46258 1.49688 1.55628 1.81419 2.10480 2.56795 2.76880 3.32857 3.40761 3.46997 3.53037 3.65331 3.76686 4.05681 4.08456 4.19319 4.21388 4.26606 4.27289 4.33771 4.36224 4.40282 4.48786 4.50588 4.53507 4.60357 4.65704 4.77941 4.81447 4.83072 4.86387 4.93729 4.98698 5.01798 5.06689 5.09238 5.09332 5.19264 5.23811 5.29667 5.36130 5.36938 5.44180 5.53782 5.56595 5.70221 6.29720 6.30912 6.46254 6.92099 7.35124 8.11934 8.34042 9.31910 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.002738 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.191794 B =10225.636060 C =11549.454074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.024 4.024 3 C 0.199 3.801 4 N -0.468 5.468 5 C -0.097 4.097 6 C 0.602 3.398 7 O -0.571 6.571 8 N -0.601 5.601 9 C 0.123 3.877 10 C -0.080 4.080 11 H 0.125 0.875 12 C -0.104 4.104 13 C -0.108 4.108 14 C -0.128 4.128 15 C 0.190 3.810 16 H 0.051 0.949 17 N -0.741 5.741 18 C -0.234 4.234 19 H 0.079 0.921 20 C -0.081 4.081 21 N -0.974 5.974 22 Si 0.972 3.028 23 H -0.300 1.300 24 H -0.277 1.277 25 H -0.277 1.277 26 C -0.087 4.087 27 H 0.063 0.937 28 C 0.126 3.874 29 C 0.043 3.957 30 C -0.075 4.075 31 O -0.195 6.195 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.044 0.956 44 H 0.037 0.963 45 H 0.370 0.630 46 H 0.249 0.751 47 H 0.064 0.936 48 H 0.042 0.958 49 H 0.101 0.899 50 H 0.109 0.891 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.046 -23.084 -12.697 30.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.062 4.062 3 C -0.010 4.010 4 N -0.197 5.197 5 C -0.216 4.216 6 C 0.391 3.609 7 O -0.452 6.452 8 N -0.332 5.332 9 C 0.001 3.999 10 C -0.099 4.099 11 H 0.143 0.857 12 C -0.142 4.142 13 C -0.146 4.146 14 C -0.168 4.168 15 C 0.082 3.918 16 H 0.069 0.931 17 N -0.381 5.381 18 C -0.365 4.365 19 H 0.097 0.903 20 C -0.273 4.273 21 N -0.625 5.625 22 Si 0.801 3.199 23 H -0.226 1.226 24 H -0.203 1.203 25 H -0.203 1.203 26 C -0.107 4.107 27 H 0.081 0.919 28 C 0.004 3.996 29 C -0.014 4.014 30 C -0.131 4.131 31 O -0.082 6.082 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.202 0.798 46 H 0.057 0.943 47 H 0.082 0.918 48 H 0.061 0.939 49 H 0.119 0.881 50 H 0.128 0.872 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.858 -22.715 -12.218 29.766 hybrid contribution 1.121 1.807 -0.333 2.153 sum -13.736 -20.908 -12.552 27.989 Atomic orbital electron populations 1.21783 0.92182 1.04374 1.02177 1.20435 0.97370 0.81174 1.07180 1.27309 0.98269 0.97943 0.77509 1.70804 1.16418 1.01958 1.30513 1.21172 1.13199 0.94635 0.92544 1.16753 0.77681 0.85563 0.80874 1.90776 1.50214 1.29163 1.75032 1.48302 1.64308 1.16502 1.04102 1.22498 1.01065 0.85622 0.90679 1.22376 0.94998 0.97879 0.94627 0.85666 1.21518 0.95579 1.00354 0.96734 1.21226 0.99206 0.96374 0.97782 1.21882 0.96573 0.98270 1.00123 1.19770 0.89983 0.87448 0.94575 0.93071 1.42785 1.55378 1.34257 1.05704 1.19606 1.20249 1.08264 0.88427 0.90291 1.25578 1.02226 1.00455 0.99000 1.69846 1.42317 1.28243 1.22089 0.85224 0.78056 0.77661 0.78917 1.22649 1.20339 1.20262 1.21584 0.99569 0.96181 0.93332 0.91866 1.21845 0.99199 0.90857 0.87727 1.24040 0.96815 0.86320 0.94206 1.20652 1.03533 0.90712 0.98197 1.84348 1.63822 1.21801 1.38277 0.92919 0.92674 0.88337 0.86451 0.86039 0.90803 0.89666 0.93703 0.88878 0.90982 0.90671 0.93681 0.94412 0.79843 0.94274 0.91766 0.93899 0.88085 0.87225 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 71.98 0.71 -0.33 16 2 C -0.02 -0.20 6.56 29.85 0.20 -0.01 16 3 C 0.20 3.73 7.56 88.39 0.67 4.40 16 4 N -0.47 -11.46 8.84 -293.03 -2.59 -14.05 16 5 C -0.10 -2.85 6.83 40.41 0.28 -2.58 16 6 C 0.60 21.66 7.85 86.67 0.68 22.34 16 7 O -0.57 -23.93 15.08 -4.04 -0.06 -23.99 16 8 N -0.60 -20.25 3.33 -815.57 -2.71 -22.96 16 9 C 0.12 3.14 4.82 87.06 0.42 3.56 16 10 C -0.08 -1.91 3.61 -9.65 -0.03 -1.94 16 11 H 0.13 2.36 8.14 -2.38 -0.02 2.34 16 12 C -0.10 -2.30 4.61 30.46 0.14 -2.16 16 13 C -0.11 -2.64 5.88 30.10 0.18 -2.46 16 14 C -0.13 -4.49 5.24 30.18 0.16 -4.33 16 15 C 0.19 7.44 2.49 44.20 0.11 7.55 16 16 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 17 N -0.74 -38.28 5.03 -326.73 -1.64 -39.92 16 18 C -0.23 -13.16 9.89 84.03 0.83 -12.32 16 19 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 20 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 21 N -0.97 -62.28 13.06 21.65 0.28 -61.99 16 22 Si 0.97 47.40 29.55 68.60 2.03 49.43 16 23 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 C -0.09 -2.94 2.54 -10.89 -0.03 -2.97 16 27 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 28 C 0.13 4.81 5.03 86.54 0.44 5.25 16 29 C 0.04 1.07 7.44 25.19 0.19 1.26 16 30 C -0.07 -1.49 9.88 71.24 0.70 -0.79 16 31 O -0.19 -4.06 10.73 0.39 0.00 -4.06 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 33 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.10 0.24 8.14 -2.38 -0.02 0.22 16 35 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 1.84 7.74 -2.39 -0.02 1.82 16 38 H 0.09 2.01 7.25 -2.38 -0.02 2.00 16 39 H 0.04 1.15 7.08 -2.39 -0.02 1.13 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.04 1.43 6.79 -2.39 -0.02 1.41 16 45 H 0.37 21.04 6.44 -92.71 -0.60 20.45 16 46 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 47 H 0.06 2.54 6.07 -2.39 -0.01 2.53 16 48 H 0.04 1.97 7.39 -2.39 -0.02 1.95 16 49 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 51 H 0.09 2.31 6.48 -2.39 -0.02 2.30 16 Total: -1.00 -76.63 397.85 1.75 -74.89 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: 0.34 Total: 32.50 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 6.10 Total: 10.16 kcal Atomic # 7 Polarization: -132.27 SS G_CDS: -6.66 Total: -138.93 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.06 Total: -28.04 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -76.63 1.75 -74.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992832328.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.453 kcal (2) G-P(sol) polarization free energy of solvation -76.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds