Wall clock time and date at job start Wed Apr 1 2020 05:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 O 1.34249 * 126.52088 * 60.02437 * 4 2 1 6 6 C 1.34054 * 108.22524 * 179.97438 * 5 4 2 7 7 N 1.29932 * 109.24245 * 0.02562 * 6 5 4 8 8 C 1.36063 * 108.47759 * 359.75170 * 7 6 5 9 9 C 1.47421 * 126.45254 * 180.29041 * 8 7 6 10 10 O 1.21609 * 120.00266 * 180.12215 * 9 8 7 11 11 N 1.34774 * 119.99724 * 0.11787 * 9 8 7 12 12 C 1.48662 * 125.78304 * 359.69762 * 11 9 8 13 13 C 1.53306 * 103.32389 * 155.54314 * 12 11 9 14 14 H 1.08996 * 110.75564 * 284.61701 * 13 12 11 15 15 C 1.51616 * 117.39506 * 156.43394 * 13 12 11 16 16 C 1.53819 * 107.01845 * 183.50163 * 15 13 12 17 17 C 1.52520 * 111.70053 * 57.53817 * 16 15 13 18 18 C 1.51852 * 111.84427 * 306.38173 * 17 16 15 19 19 H 1.09004 * 108.79335 * 297.19975 * 18 17 16 20 20 N 1.46490 * 110.07391 * 176.60976 * 18 17 16 21 21 C 1.36936 * 120.00370 * 86.06738 * 20 18 17 22 22 H 1.08004 * 119.99561 * 359.97438 * 21 20 18 23 23 C 1.38814 * 120.00348 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00058 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99952 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47274 * 89.99934 * 25 23 21 27 27 H 1.48504 * 109.47144 * 210.00115 * 25 23 21 28 28 H 1.48504 * 109.47130 * 330.00453 * 25 23 21 29 29 C 1.51447 * 108.06662 * 56.53191 * 18 17 16 30 30 H 1.09001 * 110.22472 * 55.16873 * 29 18 17 31 31 C 1.48247 * 125.78527 * 179.97438 * 11 9 8 32 32 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 33 33 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 34 34 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 36 36 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 37 37 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 38 38 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 39 39 H 1.08001 * 125.37614 * 179.97438 * 6 5 4 40 40 H 1.08999 * 110.62928 * 274.11834 * 12 11 9 41 41 H 1.08997 * 110.63031 * 37.14478 * 12 11 9 42 42 H 1.09003 * 109.94471 * 302.87690 * 15 13 12 43 43 H 1.08996 * 109.94645 * 64.03679 * 15 13 12 44 44 H 1.09004 * 109.03097 * 178.10860 * 16 15 13 45 45 H 1.09003 * 109.03458 * 297.03489 * 16 15 13 46 46 H 1.08994 * 109.04922 * 66.51231 * 17 16 15 47 47 H 1.08999 * 109.04473 * 185.39548 * 17 16 15 48 48 H 0.97007 * 120.00341 * 266.06699 * 20 18 17 49 49 H 0.97002 * 120.00045 * 179.97438 * 24 23 21 50 50 H 1.08995 * 110.17144 * 295.90012 * 31 11 9 51 51 H 1.09001 * 110.16670 * 57.63446 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 1.7904 -0.3676 -2.5057 6 6 2.4134 -1.2479 -3.3020 7 7 3.0324 -2.1246 -2.5694 8 6 2.8218 -1.8186 -1.2605 9 6 3.3480 -2.5508 -0.0942 10 8 3.0829 -2.1733 1.0310 11 7 4.1229 -3.6386 -0.2750 12 6 4.5207 -4.2142 -1.5867 13 6 5.8183 -4.9642 -1.2645 14 1 6.6461 -4.2667 -1.1368 15 6 6.2170 -6.0976 -2.1892 16 6 7.4889 -6.7322 -1.6012 17 6 7.2665 -7.2225 -0.1741 18 6 6.7130 -6.1270 0.7199 19 1 7.4447 -5.3215 0.7824 20 7 6.4389 -6.6596 2.0568 21 6 7.4357 -6.7014 2.9948 22 1 8.4241 -6.3422 2.7487 23 6 7.1762 -7.2066 4.2614 24 7 8.1344 -7.2473 5.1627 25 14 5.4669 -7.8286 4.6867 26 1 5.3712 -9.2744 4.3617 27 1 5.2141 -7.6293 6.1364 28 1 4.4566 -7.0766 3.9000 29 6 5.4321 -5.6138 0.0958 30 1 4.7374 -6.4373 -0.0701 31 6 4.7183 -4.4673 0.8004 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5139 0.8900 36 1 1.6768 1.9562 0.8900 37 1 3.1300 1.4424 0.0005 38 1 1.6767 1.9563 -0.8900 39 1 2.4018 -1.2316 -4.3818 40 1 3.7576 -4.9016 -1.9516 41 1 4.7052 -3.4229 -2.3132 42 1 5.4188 -6.8386 -2.2348 43 1 6.4209 -5.7093 -3.1870 44 1 7.7862 -7.5755 -2.2246 45 1 8.2884 -5.9913 -1.6009 46 1 6.5579 -8.0505 -0.1888 47 1 8.2145 -7.5746 0.2327 48 1 5.5513 -6.9826 2.2777 49 1 7.9530 -7.5999 6.0480 50 1 5.4312 -3.8785 1.3775 51 1 3.9359 -4.8548 1.4530 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992845322.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:20 Heat of formation + Delta-G solvation = -3.394481 kcal Electronic energy + Delta-G solvation = -31668.461828 eV Core-core repulsion = 27569.467852 eV Total energy + Delta-G solvation = -4098.993976 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.72896 -40.37410 -38.66318 -36.14776 -35.48999 -35.00364 -34.05915 -31.61354 -30.76159 -29.81252 -29.28648 -27.52610 -26.98387 -25.42926 -23.67355 -23.59660 -22.70721 -21.21373 -20.63516 -20.29462 -19.88898 -19.62936 -17.78421 -17.45059 -17.05662 -16.51750 -15.94851 -15.51344 -15.11455 -15.03240 -14.90145 -14.40019 -14.14000 -14.12611 -13.91567 -13.68019 -13.50276 -13.03868 -12.70774 -12.60301 -12.56069 -12.51687 -12.31678 -12.08388 -11.95255 -11.64258 -11.56634 -11.52019 -11.33821 -11.26123 -10.97411 -10.85152 -10.82903 -10.50328 -10.31253 -10.24596 -9.95693 -9.91645 -9.68763 -9.50608 -9.22958 -8.89499 -8.53061 -7.25524 -5.74454 -3.10048 0.88340 1.83012 2.27276 2.91004 3.23764 3.40621 3.43893 3.48667 3.74571 4.20187 4.33162 4.51542 4.62061 4.65709 4.72607 4.80078 4.90134 4.95104 5.21420 5.26872 5.30946 5.33294 5.40208 5.41311 5.44883 5.52875 5.53805 5.56468 5.58732 5.68233 5.70861 5.76767 5.83740 5.86244 5.87282 5.94065 5.97788 6.04404 6.06085 6.12919 6.17528 6.36035 6.40767 6.46487 6.52074 6.59432 6.83791 7.01966 7.17937 7.54032 8.01268 8.11728 8.44572 9.22772 9.95501 10.14946 11.43954 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.003077 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.877286 B = 9098.675566 C =10831.790134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.031 4.031 3 C -0.146 4.146 4 C 0.052 3.948 5 O -0.197 6.197 6 C 0.168 3.832 7 N -0.458 5.458 8 C -0.067 4.067 9 C 0.611 3.389 10 O -0.536 6.536 11 N -0.604 5.604 12 C 0.116 3.884 13 C -0.107 4.107 14 H 0.085 0.915 15 C -0.099 4.099 16 C -0.115 4.115 17 C -0.137 4.137 18 C 0.201 3.799 19 H 0.057 0.943 20 N -0.747 5.747 21 C -0.242 4.242 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.934 5.934 25 Si 0.882 3.118 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.276 1.276 29 C -0.108 4.108 30 H 0.077 0.923 31 C 0.124 3.876 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.136 0.864 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.253 0.747 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.067 0.933 48 H 0.361 0.639 49 H 0.259 0.741 50 H 0.079 0.921 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.431 13.570 -21.261 28.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.050 4.050 3 C -0.203 4.203 4 C -0.005 4.005 5 O -0.084 6.084 6 C -0.061 4.061 7 N -0.187 5.187 8 C -0.187 4.187 9 C 0.399 3.601 10 O -0.415 6.415 11 N -0.336 5.336 12 C -0.006 4.006 13 C -0.127 4.127 14 H 0.103 0.897 15 C -0.137 4.137 16 C -0.153 4.153 17 C -0.177 4.177 18 C 0.091 3.909 19 H 0.075 0.925 20 N -0.389 5.389 21 C -0.372 4.372 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.582 5.582 25 Si 0.712 3.288 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.202 1.202 29 C -0.128 4.128 30 H 0.095 0.905 31 C 0.003 3.997 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.154 0.846 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.269 0.731 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.086 0.914 48 H 0.194 0.806 49 H 0.069 0.931 50 H 0.097 0.903 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.041 13.356 -20.718 27.887 hybrid contribution -1.500 -0.183 0.343 1.549 sum -14.541 13.173 -20.375 28.286 Atomic orbital electron populations 1.21849 0.93142 1.02615 1.02679 1.20357 0.96748 0.96490 0.91371 1.21848 1.01740 0.94044 1.02669 1.23787 0.97107 0.95499 0.84065 1.84347 1.59036 1.48765 1.16203 1.28063 0.93480 0.85631 0.98884 1.70842 1.20965 1.25532 1.01400 1.21434 1.06067 0.99266 0.91935 1.16316 0.78250 0.79381 0.86182 1.90754 1.59950 1.67322 1.23442 1.48937 1.48614 1.26632 1.09370 1.22291 0.95399 0.97904 0.85030 1.22184 0.97132 0.97209 0.96189 0.89695 1.21283 0.98351 0.96387 0.97649 1.21541 0.96916 0.99965 0.96867 1.21920 1.02167 0.99989 0.93619 1.19499 0.92441 0.94202 0.84722 0.92508 1.42774 1.10725 1.76172 1.09249 1.19058 0.92070 1.34974 0.91049 0.89204 1.24649 0.96905 1.01244 0.96196 1.69696 1.31465 1.52011 1.05032 0.86588 0.85718 0.78903 0.77579 1.21193 1.21771 1.20237 1.22197 0.98528 0.96638 0.95425 0.90453 1.21670 0.97348 0.91558 0.89109 0.92307 0.91020 0.92176 0.84645 0.91019 0.92086 0.92311 0.73091 0.91470 0.88519 0.91742 0.91936 0.92527 0.92374 0.92883 0.91388 0.80632 0.93096 0.90260 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.18 37.16 0.34 -0.85 16 2 C -0.03 -0.32 3.24 -91.77 -0.30 -0.61 16 3 C -0.15 -1.20 9.17 37.15 0.34 -0.86 16 4 C 0.05 0.59 5.95 -35.08 -0.21 0.38 16 5 O -0.20 -1.83 10.73 6.52 0.07 -1.76 16 6 C 0.17 1.29 13.19 51.96 0.69 1.97 16 7 N -0.46 -5.10 8.45 -11.48 -0.10 -5.19 16 8 C -0.07 -0.89 6.82 -83.02 -0.57 -1.46 16 9 C 0.61 9.79 7.86 -12.52 -0.10 9.69 16 10 O -0.54 -9.80 14.81 5.27 0.08 -9.72 16 11 N -0.60 -9.22 3.38 -171.97 -0.58 -9.80 16 12 C 0.12 1.45 5.84 -2.69 -0.02 1.43 16 13 C -0.11 -1.35 2.47 -89.77 -0.22 -1.57 16 14 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 15 C -0.10 -1.08 5.75 -27.01 -0.16 -1.24 16 16 C -0.11 -1.43 5.84 -26.55 -0.15 -1.59 16 17 C -0.14 -2.23 5.40 -27.56 -0.15 -2.38 16 18 C 0.20 3.69 2.40 -69.30 -0.17 3.52 16 19 H 0.06 1.11 7.99 -51.93 -0.41 0.70 16 20 N -0.75 -17.22 4.85 -54.77 -0.27 -17.48 16 21 C -0.24 -6.71 10.43 -15.06 -0.16 -6.87 16 22 H 0.09 2.68 8.06 -52.48 -0.42 2.25 16 23 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 24 N -0.93 -29.44 13.97 55.49 0.78 -28.66 16 25 Si 0.88 22.35 27.73 -169.99 -4.71 17.63 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 28 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 29 C -0.11 -1.67 1.84 -90.35 -0.17 -1.83 16 30 H 0.08 1.18 7.97 -51.93 -0.41 0.76 16 31 C 0.12 2.10 6.51 -3.42 -0.02 2.07 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.14 1.69 5.52 -51.93 -0.29 1.41 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.25 0.56 8.06 -52.49 -0.42 0.13 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.10 1.16 6.19 -51.93 -0.32 0.84 16 42 H 0.06 0.69 8.00 -51.93 -0.42 0.28 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 48 H 0.36 8.30 5.67 -40.82 -0.23 8.07 16 49 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 50 H 0.08 1.48 8.08 -51.93 -0.42 1.06 16 51 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 399.74 15.07 6.02 6.02 Total: -1.00 -33.76 399.74 -8.25 -42.01 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -8.43 Total: 7.08 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -1.11 Total: -0.12 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -0.17 Total: -61.14 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.15 Total: -11.48 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.76 -8.25 -42.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992845322.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.615 kcal (2) G-P(sol) polarization free energy of solvation -33.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds