Wall clock time and date at job start Wed Apr 1 2020 05:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 O 1.34249 * 126.52088 * 60.02437 * 4 2 1 6 6 C 1.34054 * 108.22524 * 179.97438 * 5 4 2 7 7 N 1.29932 * 109.24245 * 0.02562 * 6 5 4 8 8 C 1.36063 * 108.47759 * 359.75170 * 7 6 5 9 9 C 1.47421 * 126.45254 * 180.29041 * 8 7 6 10 10 O 1.21609 * 120.00266 * 180.12215 * 9 8 7 11 11 N 1.34774 * 119.99724 * 0.11787 * 9 8 7 12 12 C 1.48662 * 125.78304 * 359.69762 * 11 9 8 13 13 C 1.53306 * 103.32389 * 155.54314 * 12 11 9 14 14 H 1.08996 * 110.75564 * 284.61701 * 13 12 11 15 15 C 1.51616 * 117.39506 * 156.43394 * 13 12 11 16 16 C 1.53819 * 107.01845 * 183.50163 * 15 13 12 17 17 C 1.52520 * 111.70053 * 57.53817 * 16 15 13 18 18 C 1.51852 * 111.84427 * 306.38173 * 17 16 15 19 19 H 1.09004 * 108.79335 * 297.19975 * 18 17 16 20 20 N 1.46490 * 110.07391 * 176.60976 * 18 17 16 21 21 C 1.36936 * 120.00370 * 86.06738 * 20 18 17 22 22 H 1.08004 * 119.99561 * 359.97438 * 21 20 18 23 23 C 1.38814 * 120.00348 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00058 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99952 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47274 * 89.99934 * 25 23 21 27 27 H 1.48504 * 109.47144 * 210.00115 * 25 23 21 28 28 H 1.48504 * 109.47130 * 330.00453 * 25 23 21 29 29 C 1.51447 * 108.06662 * 56.53191 * 18 17 16 30 30 H 1.09001 * 110.22472 * 55.16873 * 29 18 17 31 31 C 1.48247 * 125.78527 * 179.97438 * 11 9 8 32 32 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 33 33 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 34 34 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 36 36 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 37 37 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 38 38 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 39 39 H 1.08001 * 125.37614 * 179.97438 * 6 5 4 40 40 H 1.08999 * 110.62928 * 274.11834 * 12 11 9 41 41 H 1.08997 * 110.63031 * 37.14478 * 12 11 9 42 42 H 1.09003 * 109.94471 * 302.87690 * 15 13 12 43 43 H 1.08996 * 109.94645 * 64.03679 * 15 13 12 44 44 H 1.09004 * 109.03097 * 178.10860 * 16 15 13 45 45 H 1.09003 * 109.03458 * 297.03489 * 16 15 13 46 46 H 1.08994 * 109.04922 * 66.51231 * 17 16 15 47 47 H 1.08999 * 109.04473 * 185.39548 * 17 16 15 48 48 H 0.97007 * 120.00341 * 266.06699 * 20 18 17 49 49 H 0.97002 * 120.00045 * 179.97438 * 24 23 21 50 50 H 1.08995 * 110.17144 * 295.90012 * 31 11 9 51 51 H 1.09001 * 110.16670 * 57.63446 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 1.7904 -0.3676 -2.5057 6 6 2.4134 -1.2479 -3.3020 7 7 3.0324 -2.1246 -2.5694 8 6 2.8218 -1.8186 -1.2605 9 6 3.3480 -2.5508 -0.0942 10 8 3.0829 -2.1733 1.0310 11 7 4.1229 -3.6386 -0.2750 12 6 4.5207 -4.2142 -1.5867 13 6 5.8183 -4.9642 -1.2645 14 1 6.6461 -4.2667 -1.1368 15 6 6.2170 -6.0976 -2.1892 16 6 7.4889 -6.7322 -1.6012 17 6 7.2665 -7.2225 -0.1741 18 6 6.7130 -6.1270 0.7199 19 1 7.4447 -5.3215 0.7824 20 7 6.4389 -6.6596 2.0568 21 6 7.4357 -6.7014 2.9948 22 1 8.4241 -6.3422 2.7487 23 6 7.1762 -7.2066 4.2614 24 7 8.1344 -7.2473 5.1627 25 14 5.4669 -7.8286 4.6867 26 1 5.3712 -9.2744 4.3617 27 1 5.2141 -7.6293 6.1364 28 1 4.4566 -7.0766 3.9000 29 6 5.4321 -5.6138 0.0958 30 1 4.7374 -6.4373 -0.0701 31 6 4.7183 -4.4673 0.8004 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5139 0.8900 36 1 1.6768 1.9562 0.8900 37 1 3.1300 1.4424 0.0005 38 1 1.6767 1.9563 -0.8900 39 1 2.4018 -1.2316 -4.3818 40 1 3.7576 -4.9016 -1.9516 41 1 4.7052 -3.4229 -2.3132 42 1 5.4188 -6.8386 -2.2348 43 1 6.4209 -5.7093 -3.1870 44 1 7.7862 -7.5755 -2.2246 45 1 8.2884 -5.9913 -1.6009 46 1 6.5579 -8.0505 -0.1888 47 1 8.2145 -7.5746 0.2327 48 1 5.5513 -6.9826 2.2777 49 1 7.9530 -7.5999 6.0480 50 1 5.4312 -3.8785 1.3775 51 1 3.9359 -4.8548 1.4530 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992845322.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:19 Heat of formation + Delta-G solvation = -26.493765 kcal Electronic energy + Delta-G solvation = -31669.463488 eV Core-core repulsion = 27569.467852 eV Total energy + Delta-G solvation = -4099.995636 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.49521 -41.60025 -39.90818 -37.25516 -36.57701 -35.84718 -35.62237 -33.54752 -31.94353 -30.98124 -30.56482 -28.29107 -28.16628 -26.60712 -25.18900 -24.34487 -24.07998 -22.30377 -21.62904 -21.57002 -21.14736 -20.68429 -19.65332 -18.59261 -17.85175 -17.54710 -17.00332 -16.74877 -16.56384 -16.15109 -15.91494 -15.76253 -15.36106 -15.28359 -15.17252 -14.71213 -14.64149 -14.35900 -14.16451 -13.97399 -13.73723 -13.59952 -13.45123 -13.14551 -12.97596 -12.90153 -12.78919 -12.56235 -12.43404 -12.36099 -12.28944 -12.17142 -11.92185 -11.85817 -11.79759 -11.60772 -11.53948 -11.29847 -11.05400 -10.90657 -10.88431 -10.12159 -9.70840 -9.31439 -8.02878 -5.35161 0.00570 1.05440 1.35214 1.38174 1.44800 1.48065 1.83377 2.14995 2.46877 2.98702 3.23723 3.29044 3.42223 3.52795 3.59893 3.72033 3.89600 3.95981 4.02905 4.16473 4.18770 4.23466 4.40273 4.41582 4.50529 4.50877 4.56099 4.58976 4.62956 4.68279 4.69051 4.74429 4.82244 4.84475 4.85496 4.91073 4.99923 5.07736 5.09882 5.21768 5.22920 5.27235 5.29543 5.33297 5.37489 5.41314 5.50558 5.65284 5.78022 6.21610 6.29741 6.48589 6.92815 7.07652 7.84122 8.02608 9.19044 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.003077 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.877286 B = 9098.675566 C =10831.790134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.036 4.036 3 C -0.140 4.140 4 C 0.056 3.944 5 O -0.193 6.193 6 C 0.197 3.803 7 N -0.484 5.484 8 C -0.095 4.095 9 C 0.601 3.399 10 O -0.573 6.573 11 N -0.607 5.607 12 C 0.124 3.876 13 C -0.094 4.094 14 H 0.077 0.923 15 C -0.089 4.089 16 C -0.109 4.109 17 C -0.129 4.129 18 C 0.196 3.804 19 H 0.037 0.963 20 N -0.751 5.751 21 C -0.222 4.222 22 H 0.057 0.943 23 C -0.063 4.063 24 N -0.985 5.985 25 Si 0.949 3.051 26 H -0.275 1.275 27 H -0.298 1.298 28 H -0.257 1.257 29 C -0.102 4.102 30 H 0.089 0.911 31 C 0.127 3.873 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.308 0.692 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.038 0.962 48 H 0.364 0.636 49 H 0.257 0.743 50 H 0.049 0.951 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.883 14.128 -25.638 33.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.055 4.055 3 C -0.197 4.197 4 C -0.002 4.002 5 O -0.079 6.079 6 C -0.031 4.031 7 N -0.212 5.212 8 C -0.213 4.213 9 C 0.391 3.609 10 O -0.454 6.454 11 N -0.338 5.338 12 C 0.003 3.997 13 C -0.113 4.113 14 H 0.095 0.905 15 C -0.127 4.127 16 C -0.147 4.147 17 C -0.169 4.169 18 C 0.088 3.912 19 H 0.055 0.945 20 N -0.394 5.394 21 C -0.353 4.353 22 H 0.075 0.925 23 C -0.254 4.254 24 N -0.636 5.636 25 Si 0.777 3.223 26 H -0.202 1.202 27 H -0.225 1.225 28 H -0.182 1.182 29 C -0.122 4.122 30 H 0.108 0.892 31 C 0.005 3.995 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.323 0.677 40 H 0.099 0.901 41 H 0.126 0.874 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.057 0.943 48 H 0.197 0.803 49 H 0.065 0.935 50 H 0.067 0.933 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.497 13.907 -25.179 32.673 hybrid contribution -0.672 -0.245 1.607 1.759 sum -16.169 13.663 -23.572 31.682 Atomic orbital electron populations 1.21818 0.91499 1.02290 1.04050 1.20338 0.98076 0.97069 0.90005 1.21820 1.00847 0.93003 1.04056 1.23874 0.96300 0.94853 0.85141 1.84387 1.59156 1.49021 1.15336 1.29316 0.90234 0.83258 1.00334 1.70764 1.22823 1.27216 1.00409 1.21087 1.07863 1.00278 0.92097 1.16838 0.77893 0.79364 0.86825 1.90729 1.61240 1.68283 1.25171 1.49026 1.48406 1.26461 1.09911 1.22392 0.95286 0.98230 0.83759 1.22185 0.97089 0.97485 0.94571 0.90483 1.21276 0.97537 0.95555 0.98343 1.21492 0.98091 1.00894 0.94195 1.21759 1.00419 0.99005 0.95715 1.19709 0.93901 0.94306 0.83246 0.94505 1.42807 1.09702 1.76436 1.10425 1.19007 0.91760 1.32691 0.91876 0.92529 1.25420 1.01042 1.02682 0.96277 1.69873 1.33948 1.54275 1.05494 0.85490 0.81156 0.78790 0.76860 1.20151 1.22540 1.18229 1.22044 0.96967 0.96464 0.96725 0.89242 1.21461 0.96380 0.91962 0.89722 0.90818 0.89745 0.93317 0.87662 0.89745 0.93431 0.90789 0.67743 0.90106 0.87374 0.90545 0.88743 0.90345 0.92342 0.92580 0.94271 0.80340 0.93461 0.93274 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.18 71.98 0.66 -1.44 16 2 C -0.04 -0.72 3.24 -11.54 -0.04 -0.76 16 3 C -0.14 -2.16 9.17 71.98 0.66 -1.50 16 4 C 0.06 1.20 5.95 25.19 0.15 1.35 16 5 O -0.19 -2.97 10.73 0.42 0.00 -2.96 16 6 C 0.20 2.19 13.19 130.52 1.72 3.92 16 7 N -0.48 -9.41 8.45 -305.15 -2.58 -11.99 16 8 C -0.10 -2.45 6.82 40.41 0.28 -2.17 16 9 C 0.60 19.74 7.86 86.66 0.68 20.42 16 10 O -0.57 -22.21 14.81 -4.06 -0.06 -22.27 16 11 N -0.61 -18.60 3.38 -816.26 -2.76 -21.36 16 12 C 0.12 2.82 5.84 86.06 0.50 3.33 16 13 C -0.09 -2.16 2.47 -10.25 -0.03 -2.19 16 14 H 0.08 1.93 8.03 -2.39 -0.02 1.91 16 15 C -0.09 -1.60 5.75 30.42 0.17 -1.42 16 16 C -0.11 -2.42 5.84 30.71 0.18 -2.24 16 17 C -0.13 -4.13 5.40 30.06 0.16 -3.97 16 18 C 0.20 7.33 2.40 44.11 0.11 7.43 16 19 H 0.04 1.51 7.99 -2.38 -0.02 1.49 16 20 N -0.75 -35.40 4.85 -327.18 -1.59 -36.99 16 21 C -0.22 -12.87 10.43 84.03 0.88 -11.99 16 22 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 23 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 24 N -0.98 -64.68 13.97 21.65 0.30 -64.37 16 25 Si 0.95 47.26 27.73 68.60 1.90 49.16 16 26 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 27 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 28 H -0.26 -11.84 6.52 99.48 0.65 -11.19 16 29 C -0.10 -3.10 1.84 -10.62 -0.02 -3.12 16 30 H 0.09 2.55 7.97 -2.39 -0.02 2.53 16 31 C 0.13 4.43 6.51 85.82 0.56 4.99 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.11 2.79 5.52 -2.39 -0.01 2.78 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.31 -0.57 8.06 -2.91 -0.02 -0.60 16 40 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.11 2.29 6.19 -2.39 -0.01 2.27 16 42 H 0.08 1.27 8.00 -2.39 -0.02 1.25 16 43 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.36 16.71 5.67 -92.70 -0.53 16.18 16 49 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 50 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 51 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -79.35 399.74 2.66 -76.69 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.34 Total: 26.81 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 7.09 Total: 7.28 kcal Atomic # 7 Polarization: -128.09 SS G_CDS: -6.62 Total: -134.71 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.06 Total: -25.24 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.90 Total: 49.16 kcal Total: -79.35 2.66 -76.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992845322.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.197 kcal (2) G-P(sol) polarization free energy of solvation -79.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds