Wall clock time and date at job start Wed Apr 1 2020 05:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46634 * 2 1 4 4 C 1.50707 * 109.46782 * 180.02562 * 3 2 1 5 5 C 1.35321 * 126.66483 * 90.29097 * 4 3 2 6 6 C 1.42274 * 103.91728 * 180.15038 * 5 4 3 7 7 C 1.48332 * 126.93635 * 179.88884 * 6 5 4 8 8 O 1.21497 * 119.99689 * 359.70171 * 7 6 5 9 9 N 1.34777 * 120.00052 * 179.70986 * 7 6 5 10 10 C 1.49454 * 125.72922 * 0.43347 * 9 7 6 11 11 C 1.52331 * 105.48682 * 177.04378 * 10 9 7 12 12 H 1.09001 * 109.88540 * 271.59164 * 11 10 9 13 13 C 1.51436 * 117.45499 * 145.05966 * 11 10 9 14 14 C 1.53843 * 107.04504 * 180.72236 * 13 11 10 15 15 C 1.52523 * 111.65799 * 57.20148 * 14 13 11 16 16 C 1.53818 * 111.70070 * 305.95149 * 15 14 13 17 17 H 1.09002 * 109.93860 * 177.00426 * 16 15 14 18 18 N 1.46496 * 109.94335 * 298.16287 * 16 15 14 19 19 C 1.36939 * 119.99961 * 208.82629 * 18 16 15 20 20 H 1.08007 * 119.99825 * 359.72898 * 19 18 16 21 21 C 1.38805 * 119.99919 * 180.02562 * 19 18 16 22 22 N 1.31626 * 119.99830 * 179.72621 * 21 19 18 23 23 Si 1.86803 * 120.00353 * 359.72608 * 21 19 18 24 24 H 1.48495 * 109.47033 * 89.99898 * 23 21 19 25 25 H 1.48503 * 109.46932 * 210.00123 * 23 21 19 26 26 H 1.48494 * 109.46728 * 330.00092 * 23 21 19 27 27 C 1.51620 * 107.09509 * 57.58706 * 16 15 14 28 28 H 1.08997 * 110.50444 * 55.15106 * 27 16 15 29 29 C 1.48660 * 125.78154 * 179.97438 * 9 7 6 30 30 N 1.30981 * 106.12226 * 359.62023 * 6 5 4 31 31 O 1.20903 * 111.44627 * 0.24355 * 30 6 5 32 32 H 1.09007 * 109.46843 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47592 * 299.99453 * 1 2 3 34 34 H 1.08996 * 109.47905 * 60.00474 * 1 2 3 35 35 H 1.09003 * 109.47201 * 240.00740 * 2 1 3 36 36 H 1.09004 * 109.47357 * 119.99881 * 2 1 3 37 37 H 1.09000 * 109.47458 * 60.00458 * 3 2 1 38 38 H 1.09004 * 109.47151 * 300.00007 * 3 2 1 39 39 H 1.07996 * 128.04187 * 0.02562 * 5 4 3 40 40 H 1.08999 * 110.57358 * 57.95391 * 10 9 7 41 41 H 1.09001 * 110.13767 * 295.90419 * 10 9 7 42 42 H 1.09007 * 109.93933 * 61.33716 * 13 11 10 43 43 H 1.09003 * 109.94006 * 300.10519 * 13 11 10 44 44 H 1.08998 * 109.04200 * 296.63707 * 14 13 11 45 45 H 1.09003 * 109.04114 * 177.76289 * 14 13 11 46 46 H 1.09004 * 109.03326 * 185.38765 * 15 14 13 47 47 H 1.09000 * 108.97835 * 66.48493 * 15 14 13 48 48 H 0.96999 * 120.00093 * 28.83106 * 18 16 15 49 49 H 0.97000 * 119.99953 * 179.97438 * 22 21 19 50 50 H 1.08992 * 110.62716 * 37.13072 * 29 9 7 51 51 H 1.09002 * 110.76416 * 274.17099 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3545 1.4483 -1.0864 6 6 5.6668 1.4418 -0.5369 7 6 6.9469 1.4420 -1.2862 8 8 6.9396 1.4426 -2.5011 9 7 8.1181 1.4412 -0.6192 10 6 8.2762 1.4311 0.8669 11 6 9.7773 1.3588 1.1158 12 1 10.0983 0.3175 1.1465 13 6 10.3222 2.1011 2.3180 14 6 11.8452 1.8840 2.3297 15 6 12.4908 2.3537 1.0301 16 6 11.8321 1.7049 -0.1991 17 1 12.2785 2.0995 -1.1118 18 7 12.0025 0.2507 -0.1482 19 6 12.0564 -0.4734 -1.3091 20 1 11.9689 0.0270 -2.2623 21 6 12.2173 -1.8513 -1.2608 22 7 12.2638 -2.5480 -2.3766 23 14 12.3681 -2.7169 0.3877 24 1 11.0179 -3.1071 0.8671 25 1 13.2090 -3.9312 0.2341 26 1 12.9972 -1.8004 1.3722 27 6 10.3576 2.0548 -0.1514 28 1 10.2232 3.1349 -0.0923 29 6 9.4702 1.4407 -1.2371 30 7 5.5162 1.4416 0.7643 31 8 4.3476 1.4421 1.0740 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 -0.3635 0.5137 -0.8900 35 1 1.8933 -0.5137 -0.8901 36 1 1.8933 -0.5138 0.8900 37 1 1.6765 1.9564 0.8900 38 1 1.6764 1.9564 -0.8900 39 1 4.0692 1.4541 -2.1280 40 1 7.7813 0.5612 1.2988 41 1 7.8681 2.3471 1.2939 42 1 9.8828 1.7017 3.2321 43 1 10.0990 3.1644 2.2308 44 1 12.0521 0.8226 2.4663 45 1 12.2772 2.4392 3.1624 46 1 13.5493 2.0939 1.0448 47 1 12.3918 3.4367 0.9563 48 1 12.0771 -0.1991 0.7080 49 1 12.3766 -3.5108 -2.3429 50 1 9.4817 2.0566 -2.1362 51 1 9.7904 0.4241 -1.4654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992851809.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:33 Heat of formation + Delta-G solvation = 34.644312 kcal Electronic energy + Delta-G solvation = -31573.703591 eV Core-core repulsion = 27476.359101 eV Total energy + Delta-G solvation = -4097.344490 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.16792 -40.26076 -38.57375 -36.07255 -35.49721 -33.97181 -33.76727 -31.95503 -31.51948 -30.40448 -29.44569 -27.37051 -27.04960 -25.55135 -23.78492 -22.98278 -22.61828 -21.89495 -20.96687 -20.80287 -19.09734 -18.74715 -17.86705 -17.66982 -17.39099 -16.67661 -15.78655 -15.56937 -15.23378 -14.85221 -14.59809 -14.46868 -14.28501 -14.02099 -13.89868 -13.64973 -13.57122 -12.92472 -12.79647 -12.76535 -12.49536 -12.42231 -12.01986 -12.01433 -11.90538 -11.76965 -11.74234 -11.40233 -11.32435 -11.09768 -10.99429 -10.77667 -10.54831 -10.46622 -10.36774 -10.14499 -10.06285 -10.00719 -9.59517 -9.53425 -9.44984 -8.95368 -8.35037 -7.31299 -5.79559 -3.15222 1.08086 1.58341 2.75267 2.98384 3.31790 3.33578 3.35659 3.42716 3.89820 4.18949 4.52655 4.54573 4.55466 4.60925 4.79467 4.86086 4.92313 4.99761 5.06455 5.18725 5.24139 5.28164 5.33145 5.33513 5.39259 5.47566 5.54105 5.60848 5.62278 5.69775 5.72542 5.76049 5.79975 5.85114 5.86514 5.89026 5.92555 5.99298 6.14094 6.23200 6.27100 6.40557 6.47330 6.49555 6.65021 6.71166 6.75661 6.98139 7.64529 7.90188 7.97039 8.25681 8.39441 9.17598 9.89938 10.09544 11.38334 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.002894 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.204123 B = 9672.652563 C =10458.354369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.037 4.037 4 C -0.037 4.037 5 C -0.180 4.180 6 C -0.014 4.014 7 C 0.603 3.397 8 O -0.529 6.529 9 N -0.602 5.602 10 C 0.122 3.878 11 C -0.110 4.110 12 H 0.094 0.906 13 C -0.098 4.098 14 C -0.115 4.115 15 C -0.125 4.125 16 C 0.194 3.806 17 H 0.065 0.935 18 N -0.741 5.741 19 C -0.245 4.245 20 H 0.093 0.907 21 C 0.008 3.992 22 N -0.929 5.929 23 Si 0.877 3.123 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.276 1.276 27 C -0.117 4.117 28 H 0.070 0.930 29 C 0.118 3.882 30 N -0.328 5.328 31 O 0.117 5.883 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.179 0.821 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.362 0.638 49 H 0.259 0.741 50 H 0.070 0.930 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.739 11.313 10.098 24.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.075 4.075 4 C -0.100 4.100 5 C -0.203 4.203 6 C -0.173 4.173 7 C 0.389 3.611 8 O -0.405 6.405 9 N -0.336 5.336 10 C -0.001 4.001 11 C -0.129 4.129 12 H 0.113 0.887 13 C -0.136 4.136 14 C -0.153 4.153 15 C -0.164 4.164 16 C 0.083 3.917 17 H 0.083 0.917 18 N -0.384 5.384 19 C -0.374 4.374 20 H 0.111 0.889 21 C -0.188 4.188 22 N -0.576 5.576 23 Si 0.708 3.292 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.139 4.139 28 H 0.088 0.912 29 C -0.002 4.002 30 N -0.030 5.030 31 O 0.043 5.957 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.196 0.804 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.195 0.805 49 H 0.070 0.930 50 H 0.089 0.911 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.843 11.217 10.136 23.386 hybrid contribution -0.256 -0.860 0.436 0.997 sum -18.099 10.358 10.571 23.380 Atomic orbital electron populations 1.21762 0.94839 1.02250 1.02088 1.21580 0.96347 0.95009 1.03343 1.20242 0.83311 0.99045 1.04911 1.24458 0.96120 1.03811 0.85610 1.22427 0.89761 1.06635 1.01457 1.23566 0.96807 1.06918 0.90019 1.16469 0.80765 0.78019 0.85892 1.90802 1.86195 1.51256 1.12229 1.49379 1.05847 1.70290 1.08044 1.21953 0.97069 1.01620 0.79412 1.21909 0.92692 1.02376 0.95970 0.88748 1.21264 0.95652 0.99718 0.96991 1.21485 0.94694 1.01582 0.97552 1.21848 1.00117 0.99606 0.94784 1.19878 0.90589 0.85059 0.96134 0.91693 1.42819 1.88421 1.01710 1.05428 1.19066 1.42456 0.89567 0.86345 0.88937 1.24660 1.01877 0.96242 0.96022 1.69697 1.56472 1.06461 1.25009 0.86666 0.77795 0.79687 0.85099 1.21154 1.21758 1.20252 1.22835 0.98719 0.98184 0.94211 0.91185 1.22311 0.78044 1.04465 0.95418 1.74282 0.96726 1.16227 1.15741 1.84780 1.11287 1.66166 1.33509 0.92244 0.92414 0.92399 0.91151 0.91226 0.89172 0.88324 0.80359 0.91151 0.91493 0.92118 0.91980 0.92150 0.92476 0.91655 0.92270 0.80455 0.93037 0.91127 0.87210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.15 0.37 -0.31 16 2 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 3 C -0.04 -0.21 5.78 -27.88 -0.16 -0.37 16 4 C -0.04 -0.36 6.73 -35.34 -0.24 -0.60 16 5 C -0.18 -2.21 10.92 -39.07 -0.43 -2.64 16 6 C -0.01 -0.22 7.04 -82.53 -0.58 -0.80 16 7 C 0.60 11.32 7.89 -12.11 -0.10 11.23 16 8 O -0.53 -11.37 17.25 5.37 0.09 -11.28 16 9 N -0.60 -10.92 3.41 -170.76 -0.58 -11.50 16 10 C 0.12 1.90 5.34 -2.74 -0.01 1.89 16 11 C -0.11 -1.72 2.21 -90.26 -0.20 -1.92 16 12 H 0.09 1.73 6.54 -51.93 -0.34 1.39 16 13 C -0.10 -1.25 5.71 -27.08 -0.15 -1.40 16 14 C -0.12 -1.53 5.57 -26.54 -0.15 -1.68 16 15 C -0.13 -1.79 5.51 -26.55 -0.15 -1.94 16 16 C 0.19 3.42 3.00 -68.21 -0.20 3.21 16 17 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 18 N -0.74 -16.06 3.64 -53.69 -0.20 -16.26 16 19 C -0.24 -6.48 8.57 -15.06 -0.13 -6.61 16 20 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 21 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 22 N -0.93 -28.79 13.97 55.49 0.78 -28.02 16 23 Si 0.88 21.66 27.73 -169.99 -4.71 16.94 16 24 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.28 -6.36 6.53 56.52 0.37 -5.99 16 27 C -0.12 -1.93 2.37 -89.79 -0.21 -2.14 16 28 H 0.07 1.04 8.02 -51.93 -0.42 0.63 16 29 C 0.12 2.26 6.44 -2.81 -0.02 2.24 16 30 N -0.33 -4.73 9.79 33.29 0.33 -4.40 16 31 O 0.12 1.40 11.18 17.25 0.19 1.59 16 32 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.18 1.92 8.06 -52.49 -0.42 1.49 16 40 H 0.07 1.13 7.66 -51.93 -0.40 0.73 16 41 H 0.07 0.96 7.86 -51.93 -0.41 0.55 16 42 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 43 H 0.06 0.72 8.04 -51.93 -0.42 0.30 16 44 H 0.06 0.90 7.03 -51.93 -0.36 0.54 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.36 7.83 3.82 -40.82 -0.16 7.68 16 49 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 50 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 51 H 0.11 2.53 6.13 -51.93 -0.32 2.21 16 LS Contribution 397.32 15.07 5.99 5.99 Total: -1.00 -32.39 397.32 -9.05 -41.44 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -8.32 Total: 8.09 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -2.62 Total: -2.60 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.32 Total: -60.18 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.29 Total: -9.69 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.39 -9.05 -41.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992851809.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.088 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds