Wall clock time and date at job start Wed Apr 1 2020 05:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47043 * 2 1 4 4 C 1.50704 * 109.46934 * 180.02562 * 3 2 1 5 5 C 1.35316 * 126.66560 * 90.00258 * 4 3 2 6 6 C 1.42276 * 103.91949 * 179.97438 * 5 4 3 7 7 C 1.48324 * 126.93647 * 179.97438 * 6 5 4 8 8 O 1.21497 * 120.00408 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00317 * 180.02562 * 7 6 5 10 10 C 1.48246 * 125.78145 * 0.02562 * 9 7 6 11 11 C 1.52332 * 105.86615 * 176.81239 * 10 9 7 12 12 H 1.09000 * 110.24236 * 272.17805 * 11 10 9 13 13 C 1.51442 * 117.45129 * 145.32067 * 11 10 9 14 14 C 1.53839 * 107.04272 * 181.22652 * 13 11 10 15 15 C 1.52529 * 111.65684 * 57.20106 * 14 13 11 16 16 C 1.53824 * 111.70276 * 305.95125 * 15 14 13 17 17 H 1.09004 * 109.94185 * 298.08158 * 16 15 14 18 18 N 1.46496 * 109.94295 * 176.91592 * 16 15 14 19 19 C 1.36945 * 119.99718 * 85.00360 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.51618 * 107.02043 * 57.53899 * 16 15 14 28 28 H 1.09009 * 110.50434 * 55.20166 * 27 16 15 29 29 C 1.48665 * 125.79081 * 180.02562 * 9 7 6 30 30 N 1.30989 * 106.12401 * 0.26409 * 6 5 4 31 31 O 1.20903 * 111.43998 * 359.53226 * 30 6 5 32 32 H 1.08999 * 109.47163 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46627 * 299.99791 * 1 2 3 34 34 H 1.09005 * 109.47246 * 59.99611 * 1 2 3 35 35 H 1.09005 * 109.46627 * 240.00209 * 2 1 3 36 36 H 1.08996 * 109.46702 * 120.00535 * 2 1 3 37 37 H 1.08999 * 109.47626 * 60.00471 * 3 2 1 38 38 H 1.08996 * 109.47809 * 299.99858 * 3 2 1 39 39 H 1.07996 * 128.03959 * 0.02562 * 5 4 3 40 40 H 1.09007 * 110.17392 * 57.71721 * 10 9 7 41 41 H 1.08993 * 110.17395 * 295.91644 * 10 9 7 42 42 H 1.09004 * 109.93942 * 61.84457 * 13 11 10 43 43 H 1.09002 * 109.93740 * 300.61258 * 13 11 10 44 44 H 1.09004 * 109.04294 * 296.64329 * 14 13 11 45 45 H 1.08991 * 109.04576 * 177.75829 * 14 13 11 46 46 H 1.09000 * 109.03374 * 185.38437 * 15 14 13 47 47 H 1.08995 * 108.97548 * 66.48426 * 15 14 13 48 48 H 0.96996 * 120.00499 * 265.00091 * 18 16 15 49 49 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 50 50 H 1.08997 * 110.62191 * 37.13184 * 29 9 7 51 51 H 1.08997 * 110.76272 * 274.18044 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3546 1.4426 -1.0864 6 6 5.6670 1.4431 -0.5368 7 6 6.9470 1.4429 -1.2861 8 8 6.9399 1.4428 -2.5011 9 7 8.1183 1.4429 -0.6193 10 6 8.2765 1.4425 0.8547 11 6 9.7756 1.3612 1.1126 12 1 10.0969 0.3202 1.1440 13 6 10.3183 2.1039 2.3157 14 6 11.8413 1.8875 2.3298 15 6 12.4887 2.3575 1.0312 16 6 11.8322 1.7083 -0.1991 17 1 11.9607 0.6265 -0.1617 18 7 12.4324 2.2404 -1.4250 19 6 13.5842 1.6884 -1.9189 20 1 14.0502 0.8611 -1.4045 21 6 14.1526 2.1923 -3.0807 22 7 13.5848 3.2010 -3.7074 23 14 15.7242 1.4398 -3.7540 24 1 16.1223 2.1524 -4.9945 25 1 16.8048 1.5633 -2.7431 26 1 15.4943 0.0050 -4.0601 27 6 10.3575 2.0575 -0.1515 28 1 10.2227 3.1377 -0.0926 29 6 9.4705 1.4433 -1.2370 30 7 5.5165 1.4373 0.7644 31 8 4.3478 1.4428 1.0741 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 -0.3634 0.5139 -0.8900 35 1 1.8933 -0.5138 -0.8901 36 1 1.8933 -0.5139 0.8899 37 1 1.6768 1.9563 0.8900 38 1 1.6768 1.9564 -0.8899 39 1 4.0693 1.4432 -2.1280 40 1 7.7734 0.5773 1.2866 41 1 7.8718 2.3625 1.2764 42 1 9.8776 1.7043 3.2291 43 1 10.0946 3.1671 2.2282 44 1 12.0485 0.8262 2.4667 45 1 12.2717 2.4429 3.1630 46 1 13.5473 2.0982 1.0475 47 1 12.3892 3.4404 0.9572 48 1 12.0140 2.9837 -1.8868 49 1 13.9823 3.5533 -4.5190 50 1 9.4816 2.0594 -2.1361 51 1 9.7912 0.4270 -1.4655 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992851828.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:43 Heat of formation + Delta-G solvation = 25.796195 kcal Electronic energy + Delta-G solvation = -30782.652818 eV Core-core repulsion = 26684.924645 eV Total energy + Delta-G solvation = -4097.728173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.28413 -40.37976 -38.60835 -36.15821 -35.57457 -34.10265 -33.97581 -32.05985 -31.50211 -30.49624 -28.95975 -27.44787 -26.78821 -25.68220 -23.90458 -23.23553 -22.75456 -21.96746 -20.89658 -20.28247 -19.74561 -19.19200 -17.98149 -17.55331 -17.18472 -16.73311 -15.91428 -15.64847 -15.37383 -14.90264 -14.66066 -14.24991 -14.21919 -14.08214 -13.98880 -13.73843 -13.64199 -13.04480 -12.93096 -12.89150 -12.49152 -12.44814 -12.17720 -12.09763 -11.91855 -11.84600 -11.71985 -11.35822 -11.17924 -10.98902 -10.87794 -10.75790 -10.64887 -10.50681 -10.25196 -10.23323 -10.19921 -10.10924 -9.76913 -9.69714 -9.46246 -8.87397 -8.61255 -6.95451 -5.74816 -3.04211 0.95105 1.46060 2.62109 2.81489 3.13984 3.45122 3.49686 3.50706 3.75916 4.08338 4.41519 4.46577 4.47654 4.58970 4.68463 4.76327 4.82931 4.88024 4.98841 5.10853 5.16543 5.24462 5.26312 5.27637 5.40329 5.47268 5.52950 5.55653 5.58269 5.62573 5.64443 5.67734 5.75048 5.77225 5.87258 5.89574 5.92127 6.07330 6.11300 6.15147 6.19858 6.27888 6.44644 6.54144 6.60364 6.64015 6.86547 7.09184 7.44787 7.70885 7.76739 8.07350 8.43040 9.54407 10.10853 10.45573 11.47438 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017234 B = 0.002254 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.348561 B =12418.449590 C =13702.407407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.038 4.038 4 C -0.034 4.034 5 C -0.180 4.180 6 C -0.016 4.016 7 C 0.606 3.394 8 O -0.523 6.523 9 N -0.606 5.606 10 C 0.118 3.882 11 C -0.108 4.108 12 H 0.083 0.917 13 C -0.099 4.099 14 C -0.114 4.114 15 C -0.138 4.138 16 C 0.196 3.804 17 H 0.051 0.949 18 N -0.722 5.722 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.292 1.292 25 H -0.287 1.287 26 H -0.286 1.286 27 C -0.103 4.103 28 H 0.082 0.918 29 C 0.125 3.875 30 N -0.328 5.328 31 O 0.119 5.881 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.180 0.820 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.384 0.616 49 H 0.256 0.744 50 H 0.088 0.912 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.595 -4.215 13.623 28.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.076 4.076 4 C -0.097 4.097 5 C -0.203 4.203 6 C -0.175 4.175 7 C 0.391 3.609 8 O -0.398 6.398 9 N -0.340 5.340 10 C -0.004 4.004 11 C -0.127 4.127 12 H 0.102 0.898 13 C -0.137 4.137 14 C -0.152 4.152 15 C -0.179 4.179 16 C 0.085 3.915 17 H 0.069 0.931 18 N -0.362 5.362 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.213 1.213 26 H -0.213 1.213 27 C -0.123 4.123 28 H 0.100 0.900 29 C 0.005 3.995 30 N -0.029 5.029 31 O 0.044 5.956 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.197 0.803 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.218 0.782 49 H 0.065 0.935 50 H 0.106 0.894 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.571 -4.319 13.826 27.666 hybrid contribution 0.531 -0.060 -1.264 1.373 sum -23.040 -4.379 12.561 26.605 Atomic orbital electron populations 1.21769 0.94790 1.02261 1.02172 1.21574 0.96410 0.94965 1.03243 1.20259 0.83242 0.99075 1.05058 1.24472 0.96151 1.03595 0.85523 1.22436 0.89701 1.06607 1.01527 1.23507 0.96681 1.07215 0.90070 1.16469 0.80713 0.77798 0.85896 1.90830 1.86157 1.50613 1.12205 1.49077 1.05827 1.71024 1.08076 1.21790 0.96839 1.02169 0.79641 1.21906 0.92975 1.01089 0.96770 0.89839 1.21281 0.96073 1.00006 0.96333 1.21550 0.94211 1.01069 0.98417 1.22317 1.00476 1.00868 0.94224 1.19970 0.87639 0.96544 0.87298 0.93112 1.42399 1.28628 1.40189 1.25013 1.19162 1.00392 1.12199 1.05375 0.91250 1.24738 0.99268 0.98591 0.98206 1.69650 1.41006 1.27243 1.20013 0.86295 0.83420 0.78408 0.78208 1.21747 1.21339 1.21293 1.22387 0.96567 1.00169 0.93136 0.89973 1.22051 0.78328 1.02075 0.97070 1.74282 0.96840 1.16172 1.15641 1.84783 1.11252 1.66095 1.33517 0.92238 0.92360 0.92367 0.91208 0.91248 0.89075 0.88248 0.80293 0.90962 0.91093 0.92036 0.91702 0.92530 0.92652 0.91944 0.92726 0.78188 0.93452 0.89397 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 9.91 37.16 0.37 -0.16 16 2 C -0.12 -0.56 5.92 -26.73 -0.16 -0.72 16 3 C -0.04 -0.18 5.78 -27.88 -0.16 -0.34 16 4 C -0.03 -0.29 6.73 -35.35 -0.24 -0.53 16 5 C -0.18 -1.95 10.92 -39.07 -0.43 -2.38 16 6 C -0.02 -0.22 7.03 -82.53 -0.58 -0.80 16 7 C 0.61 10.22 7.89 -12.11 -0.10 10.12 16 8 O -0.52 -10.42 17.25 5.37 0.09 -10.33 16 9 N -0.61 -9.67 3.38 -171.79 -0.58 -10.25 16 10 C 0.12 1.56 5.27 -3.42 -0.02 1.54 16 11 C -0.11 -1.42 2.31 -90.36 -0.21 -1.62 16 12 H 0.08 1.09 7.92 -51.93 -0.41 0.68 16 13 C -0.10 -1.16 5.70 -27.08 -0.15 -1.32 16 14 C -0.11 -1.49 5.83 -26.54 -0.15 -1.64 16 15 C -0.14 -2.35 5.45 -26.54 -0.14 -2.49 16 16 C 0.20 3.72 2.51 -68.20 -0.17 3.54 16 17 H 0.05 0.99 7.94 -51.93 -0.41 0.58 16 18 N -0.72 -17.58 5.10 -53.69 -0.27 -17.86 16 19 C -0.24 -6.55 9.95 -15.06 -0.15 -6.70 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 23 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 C -0.10 -1.67 1.99 -89.90 -0.18 -1.85 16 28 H 0.08 1.39 8.01 -51.92 -0.42 0.98 16 29 C 0.13 2.19 6.49 -2.82 -0.02 2.17 16 30 N -0.33 -4.14 9.78 33.29 0.33 -3.82 16 31 O 0.12 1.24 11.18 17.22 0.19 1.43 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.18 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.07 0.91 7.60 -51.93 -0.39 0.51 16 41 H 0.07 0.92 7.88 -51.93 -0.41 0.51 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.77 8.03 -51.93 -0.42 0.35 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.38 10.10 7.79 -40.82 -0.32 9.78 16 49 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 50 H 0.09 1.75 8.07 -51.93 -0.42 1.33 16 51 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 409.09 15.07 6.16 6.16 Total: -1.00 -32.22 409.09 -9.63 -41.85 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -8.66 Total: 6.41 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.59 Total: -3.60 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.20 Total: -59.37 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.29 Total: -8.90 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.22 -9.63 -41.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992851828.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.645 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds