Wall clock time and date at job start Wed Apr 1 2020 05:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47043 * 2 1 4 4 C 1.50704 * 109.46934 * 180.02562 * 3 2 1 5 5 C 1.35316 * 126.66560 * 90.00258 * 4 3 2 6 6 C 1.42276 * 103.91949 * 179.97438 * 5 4 3 7 7 C 1.48324 * 126.93647 * 179.97438 * 6 5 4 8 8 O 1.21497 * 120.00408 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00317 * 180.02562 * 7 6 5 10 10 C 1.48246 * 125.78145 * 0.02562 * 9 7 6 11 11 C 1.52332 * 105.86615 * 176.81239 * 10 9 7 12 12 H 1.09000 * 110.24236 * 272.17805 * 11 10 9 13 13 C 1.51442 * 117.45129 * 145.32067 * 11 10 9 14 14 C 1.53839 * 107.04272 * 181.22652 * 13 11 10 15 15 C 1.52529 * 111.65684 * 57.20106 * 14 13 11 16 16 C 1.53824 * 111.70276 * 305.95125 * 15 14 13 17 17 H 1.09004 * 109.94185 * 298.08158 * 16 15 14 18 18 N 1.46496 * 109.94295 * 176.91592 * 16 15 14 19 19 C 1.36945 * 119.99718 * 85.00360 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.51618 * 107.02043 * 57.53899 * 16 15 14 28 28 H 1.09009 * 110.50434 * 55.20166 * 27 16 15 29 29 C 1.48665 * 125.79081 * 180.02562 * 9 7 6 30 30 N 1.30989 * 106.12401 * 0.26409 * 6 5 4 31 31 O 1.20903 * 111.43998 * 359.53226 * 30 6 5 32 32 H 1.08999 * 109.47163 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46627 * 299.99791 * 1 2 3 34 34 H 1.09005 * 109.47246 * 59.99611 * 1 2 3 35 35 H 1.09005 * 109.46627 * 240.00209 * 2 1 3 36 36 H 1.08996 * 109.46702 * 120.00535 * 2 1 3 37 37 H 1.08999 * 109.47626 * 60.00471 * 3 2 1 38 38 H 1.08996 * 109.47809 * 299.99858 * 3 2 1 39 39 H 1.07996 * 128.03959 * 0.02562 * 5 4 3 40 40 H 1.09007 * 110.17392 * 57.71721 * 10 9 7 41 41 H 1.08993 * 110.17395 * 295.91644 * 10 9 7 42 42 H 1.09004 * 109.93942 * 61.84457 * 13 11 10 43 43 H 1.09002 * 109.93740 * 300.61258 * 13 11 10 44 44 H 1.09004 * 109.04294 * 296.64329 * 14 13 11 45 45 H 1.08991 * 109.04576 * 177.75829 * 14 13 11 46 46 H 1.09000 * 109.03374 * 185.38437 * 15 14 13 47 47 H 1.08995 * 108.97548 * 66.48426 * 15 14 13 48 48 H 0.96996 * 120.00499 * 265.00091 * 18 16 15 49 49 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 50 50 H 1.08997 * 110.62191 * 37.13184 * 29 9 7 51 51 H 1.08997 * 110.76272 * 274.18044 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3546 1.4426 -1.0864 6 6 5.6670 1.4431 -0.5368 7 6 6.9470 1.4429 -1.2861 8 8 6.9399 1.4428 -2.5011 9 7 8.1183 1.4429 -0.6193 10 6 8.2765 1.4425 0.8547 11 6 9.7756 1.3612 1.1126 12 1 10.0969 0.3202 1.1440 13 6 10.3183 2.1039 2.3157 14 6 11.8413 1.8875 2.3298 15 6 12.4887 2.3575 1.0312 16 6 11.8322 1.7083 -0.1991 17 1 11.9607 0.6265 -0.1617 18 7 12.4324 2.2404 -1.4250 19 6 13.5842 1.6884 -1.9189 20 1 14.0502 0.8611 -1.4045 21 6 14.1526 2.1923 -3.0807 22 7 13.5848 3.2010 -3.7074 23 14 15.7242 1.4398 -3.7540 24 1 16.1223 2.1524 -4.9945 25 1 16.8048 1.5633 -2.7431 26 1 15.4943 0.0050 -4.0601 27 6 10.3575 2.0575 -0.1515 28 1 10.2227 3.1377 -0.0926 29 6 9.4705 1.4433 -1.2370 30 7 5.5165 1.4373 0.7644 31 8 4.3478 1.4428 1.0741 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 -0.3634 0.5139 -0.8900 35 1 1.8933 -0.5138 -0.8901 36 1 1.8933 -0.5139 0.8899 37 1 1.6768 1.9563 0.8900 38 1 1.6768 1.9564 -0.8899 39 1 4.0693 1.4432 -2.1280 40 1 7.7734 0.5773 1.2866 41 1 7.8718 2.3625 1.2764 42 1 9.8776 1.7043 3.2291 43 1 10.0946 3.1671 2.2282 44 1 12.0485 0.8262 2.4667 45 1 12.2717 2.4429 3.1630 46 1 13.5473 2.0982 1.0475 47 1 12.3892 3.4404 0.9572 48 1 12.0140 2.9837 -1.8868 49 1 13.9823 3.5533 -4.5190 50 1 9.4816 2.0594 -2.1361 51 1 9.7912 0.4270 -1.4655 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992851828.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:42 Heat of formation + Delta-G solvation = 7.063469 kcal Electronic energy + Delta-G solvation = -30783.465130 eV Core-core repulsion = 26684.924645 eV Total energy + Delta-G solvation = -4098.540485 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -46.19802 -41.68600 -39.95870 -37.08999 -36.59347 -35.65327 -35.04465 -33.31991 -32.74983 -31.73080 -30.60322 -28.20171 -27.93592 -26.91277 -25.59906 -24.50288 -23.64522 -22.51590 -22.17248 -21.57966 -21.09742 -20.30320 -19.15708 -18.89928 -18.41728 -17.94918 -17.25272 -16.70019 -16.65135 -16.00155 -15.76345 -15.64762 -15.55471 -15.28763 -15.05705 -14.80329 -14.59764 -14.32071 -14.13612 -13.94192 -13.72472 -13.56224 -13.35928 -13.27456 -12.88325 -12.82493 -12.66747 -12.53741 -12.37954 -12.25994 -12.15480 -12.05475 -11.92844 -11.81086 -11.62428 -11.56043 -11.51355 -11.48255 -11.29628 -10.95024 -10.84232 -10.45086 -9.94813 -8.99950 -7.93390 -5.21804 -0.02424 0.60024 1.45361 1.48356 1.49050 1.54188 1.91493 1.98019 2.55326 2.69454 3.18101 3.37638 3.39826 3.58087 3.69275 3.86328 3.95331 4.05536 4.09774 4.12368 4.14408 4.18694 4.28416 4.34975 4.42367 4.48541 4.52702 4.61390 4.62300 4.65245 4.72455 4.74692 4.79893 4.81014 4.83102 4.92005 4.97610 4.99884 5.05392 5.23342 5.28210 5.30508 5.33220 5.33839 5.38350 5.47132 5.50772 5.51579 5.66855 6.17656 6.27979 6.66906 6.98586 7.33963 8.10038 8.32577 9.29839 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017234 B = 0.002254 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.348561 B =12418.449590 C =13702.407407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.036 4.036 4 C -0.007 4.007 5 C -0.195 4.195 6 C -0.042 4.042 7 C 0.599 3.401 8 O -0.567 6.567 9 N -0.607 5.607 10 C 0.124 3.876 11 C -0.092 4.092 12 H 0.090 0.910 13 C -0.092 4.092 14 C -0.107 4.107 15 C -0.129 4.129 16 C 0.192 3.808 17 H 0.048 0.952 18 N -0.736 5.736 19 C -0.234 4.234 20 H 0.077 0.923 21 C -0.078 4.078 22 N -0.971 5.971 23 Si 0.970 3.030 24 H -0.299 1.299 25 H -0.276 1.276 26 H -0.280 1.280 27 C -0.097 4.097 28 H 0.074 0.926 29 C 0.129 3.871 30 N -0.334 5.334 31 O 0.132 5.868 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.187 0.813 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.043 0.957 47 H 0.041 0.959 48 H 0.370 0.630 49 H 0.249 0.751 50 H 0.052 0.948 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.513 -5.100 16.815 31.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.074 4.074 4 C -0.071 4.071 5 C -0.218 4.218 6 C -0.200 4.200 7 C 0.387 3.613 8 O -0.446 6.446 9 N -0.340 5.340 10 C 0.002 3.998 11 C -0.112 4.112 12 H 0.109 0.891 13 C -0.130 4.130 14 C -0.145 4.145 15 C -0.169 4.169 16 C 0.083 3.917 17 H 0.066 0.934 18 N -0.374 5.374 19 C -0.366 4.366 20 H 0.095 0.905 21 C -0.270 4.270 22 N -0.622 5.622 23 Si 0.799 3.201 24 H -0.225 1.225 25 H -0.203 1.203 26 H -0.206 1.206 27 C -0.117 4.117 28 H 0.093 0.907 29 C 0.007 3.993 30 N -0.033 5.033 31 O 0.053 5.947 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.204 0.796 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.202 0.798 49 H 0.058 0.942 50 H 0.071 0.929 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.475 -5.238 17.101 31.126 hybrid contribution 0.998 0.180 -2.189 2.412 sum -24.477 -5.058 14.913 29.105 Atomic orbital electron populations 1.21754 0.93749 1.02430 1.02863 1.21555 0.97232 0.94582 1.02699 1.20526 0.80152 0.99652 1.07050 1.25049 0.97357 1.00731 0.83921 1.22620 0.88854 1.07637 1.02714 1.23206 0.96079 1.09834 0.90848 1.16945 0.81812 0.76825 0.85718 1.90789 1.86980 1.52636 1.14160 1.49150 1.04973 1.70548 1.09333 1.21906 0.96929 1.03247 0.77680 1.21915 0.92489 1.01248 0.95524 0.89149 1.21287 0.94916 1.00065 0.96742 1.21488 0.94917 1.01903 0.96176 1.22137 0.99503 0.99873 0.95404 1.20198 0.89120 0.96206 0.86177 0.93378 1.42614 1.28167 1.39831 1.26834 1.19563 1.00677 1.11506 1.04868 0.90524 1.25540 1.02711 0.99650 0.99135 1.69823 1.42704 1.29191 1.20459 0.85261 0.80004 0.77589 0.77224 1.22541 1.20255 1.20580 1.22188 0.94778 0.99902 0.94825 0.90734 1.21820 0.80087 1.00843 0.96538 1.74251 0.97972 1.16225 1.14825 1.84758 1.10813 1.65093 1.33987 0.92398 0.91513 0.91846 0.92050 0.91626 0.86917 0.86421 0.79551 0.89507 0.90218 0.88616 0.91596 0.91392 0.90634 0.93859 0.93974 0.79828 0.94249 0.92950 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 71.98 0.71 0.07 16 2 C -0.12 -0.81 5.92 30.59 0.18 -0.63 16 3 C -0.04 -0.22 5.78 29.85 0.17 -0.05 16 4 C -0.01 -0.11 6.73 25.01 0.17 0.06 16 5 C -0.20 -4.07 10.92 22.60 0.25 -3.82 16 6 C -0.04 -1.16 7.03 42.96 0.30 -0.86 16 7 C 0.60 20.95 7.89 86.93 0.69 21.64 16 8 O -0.57 -24.01 17.25 -3.71 -0.06 -24.07 16 9 N -0.61 -19.78 3.38 -815.73 -2.76 -22.54 16 10 C 0.12 3.06 5.27 85.82 0.45 3.51 16 11 C -0.09 -2.24 2.31 -10.62 -0.02 -2.26 16 12 H 0.09 2.13 7.92 -2.39 -0.02 2.11 16 13 C -0.09 -1.83 5.70 30.37 0.17 -1.66 16 14 C -0.11 -2.45 5.83 30.72 0.18 -2.27 16 15 C -0.13 -4.29 5.45 30.72 0.17 -4.12 16 16 C 0.19 7.35 2.51 44.82 0.11 7.46 16 17 H 0.05 1.88 7.94 -2.38 -0.02 1.86 16 18 N -0.74 -37.19 5.10 -323.78 -1.65 -38.84 16 19 C -0.23 -13.06 9.95 84.03 0.84 -12.22 16 20 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 21 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 22 N -0.97 -61.08 13.06 21.65 0.28 -60.80 16 23 Si 0.97 47.19 29.55 68.60 2.03 49.22 16 24 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 27 C -0.10 -3.21 1.99 -10.33 -0.02 -3.23 16 28 H 0.07 2.59 8.01 -2.38 -0.02 2.57 16 29 C 0.13 4.76 6.49 85.98 0.56 5.32 16 30 N -0.33 -7.88 9.78 -49.51 -0.48 -8.37 16 31 O 0.13 2.43 11.18 71.81 0.80 3.23 16 32 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.07 0.19 8.14 -2.38 -0.02 0.17 16 34 H 0.06 0.22 8.14 -2.38 -0.02 0.20 16 35 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.11 0.30 8.14 -2.39 -0.02 0.29 16 38 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.19 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.09 1.96 7.60 -2.38 -0.02 1.94 16 41 H 0.08 1.88 7.88 -2.39 -0.02 1.86 16 42 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.35 8.03 -2.39 -0.02 1.33 16 44 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 45 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.37 20.57 7.79 -92.71 -0.72 19.85 16 49 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 50 H 0.05 2.28 8.07 -2.39 -0.02 2.26 16 51 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -73.77 409.09 3.72 -70.05 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.20 Total: 29.30 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 5.37 Total: 2.82 kcal Atomic # 7 Polarization: -125.93 SS G_CDS: -4.61 Total: -130.54 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: 0.74 Total: -20.84 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -73.77 3.72 -70.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992851828.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.112 kcal (2) G-P(sol) polarization free energy of solvation -73.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds