Wall clock time and date at job start Wed Apr 1 2020 05:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47341 * 2 1 4 4 C 1.53008 * 109.46768 * 240.00292 * 2 1 3 5 5 C 1.50697 * 109.47059 * 120.00679 * 2 1 3 6 6 C 1.35310 * 126.66953 * 60.31787 * 5 2 1 7 7 C 1.42277 * 103.92255 * 180.08399 * 6 5 2 8 8 C 1.48332 * 126.93651 * 179.88616 * 7 6 5 9 9 O 1.21487 * 120.00210 * 359.71061 * 8 7 6 10 10 N 1.34782 * 119.99464 * 179.70542 * 8 7 6 11 11 C 1.46495 * 119.99507 * 180.02562 * 10 8 7 12 12 H 1.09003 * 115.56928 * 350.71028 * 11 10 8 13 13 C 1.53040 * 117.50335 * 136.41560 * 11 10 8 14 14 C 1.52822 * 117.50158 * 205.00150 * 11 10 8 15 15 C 1.53178 * 117.71571 * 144.90243 * 14 11 10 16 16 C 1.53354 * 108.76913 * 158.87857 * 15 14 11 17 17 N 1.46839 * 108.81141 * 51.30384 * 16 15 14 18 18 C 1.36943 * 120.37901 * 123.11274 * 17 16 15 19 19 H 1.07999 * 119.99950 * 331.22649 * 18 17 16 20 20 C 1.38811 * 120.00018 * 151.22549 * 18 17 16 21 21 N 1.31621 * 119.99864 * 342.28973 * 20 18 17 22 22 Si 1.86795 * 119.99850 * 162.29129 * 20 18 17 23 23 H 1.48495 * 109.47250 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47165 * 299.99963 * 22 20 18 25 25 H 1.48504 * 109.47405 * 60.00149 * 22 20 18 26 26 C 1.46844 * 119.24249 * 303.37737 * 17 16 15 27 27 C 1.52871 * 109.07030 * 56.58865 * 26 17 16 28 28 N 1.30983 * 106.12043 * 359.61973 * 7 6 5 29 29 O 1.20904 * 111.44041 * 0.24695 * 28 7 6 30 30 H 1.08997 * 109.46613 * 300.00149 * 1 2 3 31 31 H 1.09002 * 109.47068 * 59.99370 * 1 2 3 32 32 H 1.08997 * 109.47310 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47029 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47554 * 300.00332 * 3 2 1 35 35 H 1.08997 * 109.47389 * 60.00326 * 3 2 1 36 36 H 1.09000 * 109.46567 * 299.99920 * 4 2 1 37 37 H 1.09000 * 109.47439 * 59.99976 * 4 2 1 38 38 H 1.08993 * 109.46895 * 180.02562 * 4 2 1 39 39 H 1.08000 * 128.04157 * 359.94409 * 6 5 2 40 40 H 0.96995 * 120.00375 * 359.97438 * 10 8 7 41 41 H 1.09003 * 117.50143 * 0.02562 * 13 11 10 42 42 H 1.08991 * 117.53174 * 214.93980 * 13 11 10 43 43 H 1.09003 * 109.59144 * 39.08914 * 15 14 11 44 44 H 1.09007 * 109.58622 * 278.65860 * 15 14 11 45 45 H 1.08997 * 109.57212 * 291.50879 * 16 15 14 46 46 H 1.08995 * 109.58051 * 171.10607 * 16 15 14 47 47 H 0.97000 * 119.99597 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.57737 * 176.41847 * 26 17 16 49 49 H 1.08990 * 109.58155 * 296.82534 * 26 17 16 50 50 H 1.09009 * 109.66214 * 189.04410 * 27 26 17 51 51 H 1.09001 * 109.45030 * 68.65491 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0323 -0.7105 1.2304 6 6 1.7950 -1.9977 1.5737 7 6 2.4875 -2.1565 2.8063 8 6 2.5621 -3.3844 3.6351 9 8 1.9874 -4.3937 3.2787 10 7 3.2676 -3.3804 4.7835 11 6 3.3418 -4.5933 5.6017 12 1 2.6779 -5.4042 5.3021 13 6 4.7072 -4.9744 6.1783 14 6 3.6164 -4.4214 7.0952 15 6 2.9375 -5.3971 8.0613 16 6 3.7189 -5.4090 9.3807 17 7 3.8951 -4.0252 9.8392 18 6 3.4491 -3.6434 11.0764 19 1 2.6038 -4.1448 11.5241 20 6 4.0835 -2.6120 11.7550 21 7 5.2933 -2.2358 11.3984 22 14 3.2201 -1.7579 13.1743 23 1 4.1040 -0.7004 13.7271 24 1 1.9576 -1.1449 12.6890 25 1 2.9126 -2.7500 14.2358 26 6 4.5498 -3.0540 8.9535 27 6 3.7906 -2.9958 7.6279 28 7 3.0506 -1.0011 3.0586 29 8 2.8063 -0.1922 2.1938 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4423 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1299 -0.7216 -1.2492 39 1 1.2130 -2.7329 1.0379 40 1 3.7268 -2.5747 5.0678 41 1 5.5502 -4.3224 5.9492 42 1 4.9418 -6.0358 6.2585 43 1 2.9353 -6.3977 7.6288 44 1 1.9128 -5.0745 8.2464 45 1 4.6946 -5.8687 9.2231 46 1 3.1633 -5.9739 10.1292 47 1 5.7368 -1.5153 11.8729 48 1 4.5408 -2.0693 9.4210 49 1 5.5784 -3.3635 8.7688 50 1 4.3548 -2.4029 6.9078 51 1 2.8120 -2.5440 7.7896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016723161.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:25 Heat of formation + Delta-G solvation = 59.869389 kcal Electronic energy + Delta-G solvation = -30536.344660 eV Core-core repulsion = 26440.094011 eV Total energy + Delta-G solvation = -4096.250649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.35686 -39.99161 -38.42737 -37.81526 -35.52413 -34.25346 -33.14368 -31.55025 -31.05781 -30.14688 -28.30316 -27.89081 -27.82320 -25.22424 -24.33130 -23.50573 -22.48568 -22.23700 -21.35397 -20.60982 -19.79609 -18.23027 -18.02768 -17.59717 -17.02958 -16.56990 -15.94496 -15.24650 -14.93704 -14.82555 -14.62457 -14.56566 -14.25637 -14.14186 -13.94492 -13.59430 -13.38689 -13.03298 -12.89634 -12.83030 -12.65734 -12.30653 -12.19936 -12.08042 -11.75121 -11.68458 -11.61872 -11.54324 -11.40633 -11.37829 -11.00338 -10.71566 -10.68267 -10.53947 -10.39001 -10.30347 -9.95516 -9.74861 -9.73169 -9.58850 -9.39462 -8.54368 -8.44407 -6.63667 -5.78536 -3.21536 0.89218 1.40476 2.56351 2.81010 2.99001 3.38733 3.44518 3.46139 3.73101 3.99647 4.15145 4.31147 4.34840 4.50337 4.55738 4.71846 4.93849 4.96670 5.00461 5.08974 5.10634 5.12132 5.16730 5.24891 5.34953 5.35628 5.39397 5.44584 5.50231 5.56606 5.62858 5.65277 5.73812 5.78723 5.80356 6.02753 6.06332 6.09865 6.28212 6.43243 6.49769 6.56800 6.63519 6.70444 6.82674 6.99565 7.30553 7.35549 7.65104 7.77061 7.80021 7.99413 8.47032 9.22246 9.85935 10.42552 11.29423 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.002181 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.093452 B =12837.363801 C =13964.566611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.016 3.984 3 C -0.149 4.149 4 C -0.142 4.142 5 C -0.023 4.023 6 C -0.178 4.178 7 C -0.023 4.023 8 C 0.601 3.399 9 O -0.527 6.527 10 N -0.677 5.677 11 C 0.064 3.936 12 H 0.135 0.865 13 C -0.179 4.179 14 C -0.094 4.094 15 C -0.098 4.098 16 C 0.150 3.850 17 N -0.589 5.589 18 C -0.254 4.254 19 H 0.064 0.936 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.291 1.291 24 H -0.284 1.284 25 H -0.282 1.282 26 C 0.174 3.826 27 C -0.106 4.106 28 N -0.331 5.331 29 O 0.127 5.873 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.179 0.821 40 H 0.409 0.591 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.020 0.980 46 H 0.056 0.944 47 H 0.254 0.746 48 H 0.090 0.910 49 H 0.018 0.982 50 H 0.044 0.956 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.354 4.107 -26.280 27.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.015 3.985 3 C -0.206 4.206 4 C -0.199 4.199 5 C -0.086 4.086 6 C -0.200 4.200 7 C -0.182 4.182 8 C 0.384 3.616 9 O -0.402 6.402 10 N -0.327 5.327 11 C -0.041 4.041 12 H 0.152 0.848 13 C -0.218 4.218 14 C -0.095 4.095 15 C -0.138 4.138 16 C 0.023 3.977 17 N -0.311 5.311 18 C -0.383 4.383 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.216 1.216 24 H -0.211 1.211 25 H -0.209 1.209 26 C 0.048 3.952 27 C -0.145 4.145 28 N -0.030 5.030 29 O 0.051 5.949 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.196 0.804 40 H 0.245 0.755 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.038 0.962 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.108 0.892 49 H 0.036 0.964 50 H 0.063 0.937 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.870 3.890 -25.380 26.339 hybrid contribution -0.508 0.398 0.396 0.757 sum -6.377 4.287 -24.984 26.139 Atomic orbital electron populations 1.21960 0.91923 1.03068 1.03046 1.19208 0.96178 0.95395 0.87762 1.21921 1.02007 0.93610 1.03067 1.21957 1.01852 1.00665 0.95470 1.24469 0.96653 0.93541 0.93976 1.22327 1.04703 0.96795 0.96225 1.23495 1.02215 0.94422 0.98061 1.16815 0.79265 0.85137 0.80346 1.90776 1.45791 1.32355 1.71235 1.45270 1.50925 1.15061 1.21398 1.21976 1.00754 0.89122 0.92220 0.84767 1.23550 0.92477 1.02059 1.03688 1.21982 1.00038 0.98569 0.88906 1.21711 0.99671 0.95762 0.96648 1.20853 0.96340 0.87903 0.92596 1.43948 1.69254 1.03469 1.14469 1.19149 1.08767 1.16717 0.93698 0.91814 1.25049 0.95038 1.01567 0.97966 1.70026 1.11181 1.30554 1.42812 0.86385 0.78922 0.79365 0.82203 1.21644 1.21054 1.20859 1.20641 0.92107 0.96236 0.86240 1.21752 1.01366 0.91638 0.99762 1.74218 1.18377 1.00305 1.10136 1.84789 1.50797 1.35143 1.24135 0.91802 0.90929 0.91725 0.91650 0.91251 0.91599 0.91739 0.90923 0.91864 0.80361 0.75475 0.88794 0.88161 0.92746 0.91758 0.96203 0.92592 0.93591 0.89192 0.96384 0.93733 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 8.36 37.16 0.31 -0.37 16 2 C 0.02 0.09 0.94 -155.66 -0.15 -0.06 16 3 C -0.15 -0.73 8.07 37.15 0.30 -0.43 16 4 C -0.14 -0.64 8.36 37.16 0.31 -0.33 16 5 C -0.02 -0.21 5.76 -35.35 -0.20 -0.41 16 6 C -0.18 -1.86 10.40 -39.07 -0.41 -2.27 16 7 C -0.02 -0.30 7.19 -82.52 -0.59 -0.90 16 8 C 0.60 9.20 7.85 -12.10 -0.09 9.10 16 9 O -0.53 -9.19 16.52 5.38 0.09 -9.10 16 10 N -0.68 -10.07 5.34 -54.67 -0.29 -10.36 16 11 C 0.06 0.99 6.14 -68.00 -0.42 0.57 16 12 H 0.13 2.09 7.40 -51.93 -0.38 1.71 16 13 C -0.18 -2.68 9.87 -26.78 -0.26 -2.94 16 14 C -0.09 -1.59 1.94 -154.49 -0.30 -1.89 16 15 C -0.10 -1.73 5.83 -26.46 -0.15 -1.88 16 16 C 0.15 3.13 6.52 -3.67 -0.02 3.11 16 17 N -0.59 -14.73 2.94 -172.56 -0.51 -15.23 16 18 C -0.25 -6.97 9.54 -15.06 -0.14 -7.11 16 19 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 20 C 0.00 0.07 4.89 -17.43 -0.09 -0.02 16 21 N -0.90 -26.15 11.23 55.49 0.62 -25.53 16 22 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.17 4.12 5.37 -3.92 -0.02 4.10 16 27 C -0.11 -2.02 5.36 -26.71 -0.14 -2.16 16 28 N -0.33 -4.33 11.84 33.29 0.39 -3.94 16 29 O 0.13 1.40 10.65 17.24 0.18 1.59 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.31 8.04 -51.93 -0.42 -0.11 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.29 8.02 -51.93 -0.42 -0.12 16 37 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.18 1.58 8.06 -52.49 -0.42 1.15 16 40 H 0.41 5.86 6.88 -40.82 -0.28 5.58 16 41 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 1.15 7.92 -51.93 -0.41 0.74 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.09 2.40 5.94 -51.93 -0.31 2.09 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.04 0.76 6.75 -51.92 -0.35 0.41 16 51 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 410.96 15.07 6.19 6.19 Total: -1.00 -31.52 410.96 -8.88 -40.40 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -8.46 Total: 3.13 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -2.08 Total: -3.89 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.22 Total: -55.06 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.27 Total: -7.51 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.52 -8.88 -40.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016723161.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.270 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds