Wall clock time and date at job start Wed Apr 1 2020 05:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47341 * 2 1 4 4 C 1.53008 * 109.46768 * 240.00292 * 2 1 3 5 5 C 1.50697 * 109.47059 * 120.00679 * 2 1 3 6 6 C 1.35310 * 126.66953 * 60.31787 * 5 2 1 7 7 C 1.42277 * 103.92255 * 180.08399 * 6 5 2 8 8 C 1.48332 * 126.93651 * 179.88616 * 7 6 5 9 9 O 1.21487 * 120.00210 * 359.71061 * 8 7 6 10 10 N 1.34782 * 119.99464 * 179.70542 * 8 7 6 11 11 C 1.46495 * 119.99507 * 180.02562 * 10 8 7 12 12 H 1.09003 * 115.56928 * 350.71028 * 11 10 8 13 13 C 1.53040 * 117.50335 * 136.41560 * 11 10 8 14 14 C 1.52822 * 117.50158 * 205.00150 * 11 10 8 15 15 C 1.53178 * 117.71571 * 144.90243 * 14 11 10 16 16 C 1.53354 * 108.76913 * 158.87857 * 15 14 11 17 17 N 1.46839 * 108.81141 * 51.30384 * 16 15 14 18 18 C 1.36943 * 120.37901 * 123.11274 * 17 16 15 19 19 H 1.07999 * 119.99950 * 331.22649 * 18 17 16 20 20 C 1.38811 * 120.00018 * 151.22549 * 18 17 16 21 21 N 1.31621 * 119.99864 * 342.28973 * 20 18 17 22 22 Si 1.86795 * 119.99850 * 162.29129 * 20 18 17 23 23 H 1.48495 * 109.47250 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47165 * 299.99963 * 22 20 18 25 25 H 1.48504 * 109.47405 * 60.00149 * 22 20 18 26 26 C 1.46844 * 119.24249 * 303.37737 * 17 16 15 27 27 C 1.52871 * 109.07030 * 56.58865 * 26 17 16 28 28 N 1.30983 * 106.12043 * 359.61973 * 7 6 5 29 29 O 1.20904 * 111.44041 * 0.24695 * 28 7 6 30 30 H 1.08997 * 109.46613 * 300.00149 * 1 2 3 31 31 H 1.09002 * 109.47068 * 59.99370 * 1 2 3 32 32 H 1.08997 * 109.47310 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47029 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47554 * 300.00332 * 3 2 1 35 35 H 1.08997 * 109.47389 * 60.00326 * 3 2 1 36 36 H 1.09000 * 109.46567 * 299.99920 * 4 2 1 37 37 H 1.09000 * 109.47439 * 59.99976 * 4 2 1 38 38 H 1.08993 * 109.46895 * 180.02562 * 4 2 1 39 39 H 1.08000 * 128.04157 * 359.94409 * 6 5 2 40 40 H 0.96995 * 120.00375 * 359.97438 * 10 8 7 41 41 H 1.09003 * 117.50143 * 0.02562 * 13 11 10 42 42 H 1.08991 * 117.53174 * 214.93980 * 13 11 10 43 43 H 1.09003 * 109.59144 * 39.08914 * 15 14 11 44 44 H 1.09007 * 109.58622 * 278.65860 * 15 14 11 45 45 H 1.08997 * 109.57212 * 291.50879 * 16 15 14 46 46 H 1.08995 * 109.58051 * 171.10607 * 16 15 14 47 47 H 0.97000 * 119.99597 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.57737 * 176.41847 * 26 17 16 49 49 H 1.08990 * 109.58155 * 296.82534 * 26 17 16 50 50 H 1.09009 * 109.66214 * 189.04410 * 27 26 17 51 51 H 1.09001 * 109.45030 * 68.65491 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0323 -0.7105 1.2304 6 6 1.7950 -1.9977 1.5737 7 6 2.4875 -2.1565 2.8063 8 6 2.5621 -3.3844 3.6351 9 8 1.9874 -4.3937 3.2787 10 7 3.2676 -3.3804 4.7835 11 6 3.3418 -4.5933 5.6017 12 1 2.6779 -5.4042 5.3021 13 6 4.7072 -4.9744 6.1783 14 6 3.6164 -4.4214 7.0952 15 6 2.9375 -5.3971 8.0613 16 6 3.7189 -5.4090 9.3807 17 7 3.8951 -4.0252 9.8392 18 6 3.4491 -3.6434 11.0764 19 1 2.6038 -4.1448 11.5241 20 6 4.0835 -2.6120 11.7550 21 7 5.2933 -2.2358 11.3984 22 14 3.2201 -1.7579 13.1743 23 1 4.1040 -0.7004 13.7271 24 1 1.9576 -1.1449 12.6890 25 1 2.9126 -2.7500 14.2358 26 6 4.5498 -3.0540 8.9535 27 6 3.7906 -2.9958 7.6279 28 7 3.0506 -1.0011 3.0586 29 8 2.8063 -0.1922 2.1938 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4423 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1299 -0.7216 -1.2492 39 1 1.2130 -2.7329 1.0379 40 1 3.7268 -2.5747 5.0678 41 1 5.5502 -4.3224 5.9492 42 1 4.9418 -6.0358 6.2585 43 1 2.9353 -6.3977 7.6288 44 1 1.9128 -5.0745 8.2464 45 1 4.6946 -5.8687 9.2231 46 1 3.1633 -5.9739 10.1292 47 1 5.7368 -1.5153 11.8729 48 1 4.5408 -2.0693 9.4210 49 1 5.5784 -3.3635 8.7688 50 1 4.3548 -2.4029 6.9078 51 1 2.8120 -2.5440 7.7896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016723161.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:24 Heat of formation + Delta-G solvation = 42.283996 kcal Electronic energy + Delta-G solvation = -30537.107220 eV Core-core repulsion = 26440.094011 eV Total energy + Delta-G solvation = -4097.013208 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -46.26101 -41.26243 -39.82351 -38.29753 -37.20829 -35.26297 -34.54575 -33.26822 -31.94101 -31.83460 -29.99303 -28.31777 -28.16276 -26.39511 -26.11735 -24.29031 -24.11051 -23.34242 -22.70747 -21.92881 -20.80978 -19.85425 -18.94219 -18.52675 -18.26973 -17.94584 -17.29302 -16.83489 -16.09924 -16.02138 -15.67425 -15.57944 -15.37250 -15.05891 -14.98105 -14.92820 -14.71071 -14.62884 -14.22720 -13.84717 -13.38275 -13.24509 -13.21006 -13.10876 -12.99574 -12.72760 -12.65664 -12.58290 -12.56245 -12.37359 -12.27830 -12.05493 -12.02314 -11.80996 -11.79347 -11.64665 -11.63492 -11.46339 -11.29195 -10.77694 -10.51417 -10.51214 -9.85237 -8.64554 -7.88172 -5.34174 -0.06997 0.57708 1.44950 1.47365 1.54075 1.62675 1.86653 1.89897 2.50048 2.74769 2.85953 3.26383 3.28256 3.57179 3.73277 3.77416 3.78572 3.90208 3.91534 3.95055 3.95542 4.06816 4.20188 4.37914 4.48245 4.53634 4.67645 4.78672 4.78783 4.79191 4.79794 4.80381 4.87299 4.89393 4.97631 5.01010 5.01259 5.02850 5.09965 5.17535 5.25084 5.27971 5.30000 5.34994 5.39697 5.42311 5.50295 5.63388 5.73211 6.13667 6.39424 6.75259 6.94459 7.14587 7.86673 8.37766 9.17102 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.002181 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.093452 B =12837.363801 C =13964.566611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.017 3.983 3 C -0.150 4.150 4 C -0.141 4.141 5 C -0.007 4.007 6 C -0.185 4.185 7 C -0.045 4.045 8 C 0.601 3.399 9 O -0.551 6.551 10 N -0.677 5.677 11 C 0.079 3.921 12 H 0.138 0.862 13 C -0.165 4.165 14 C -0.113 4.113 15 C -0.087 4.087 16 C 0.146 3.854 17 N -0.608 5.608 18 C -0.264 4.264 19 H 0.064 0.936 20 C -0.050 4.050 21 N -0.932 5.932 22 Si 0.965 3.035 23 H -0.293 1.293 24 H -0.281 1.281 25 H -0.274 1.274 26 C 0.182 3.818 27 C -0.090 4.090 28 N -0.350 5.350 29 O 0.130 5.870 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.057 0.943 39 H 0.193 0.807 40 H 0.411 0.589 41 H 0.097 0.903 42 H 0.120 0.880 43 H 0.087 0.913 44 H 0.054 0.946 45 H 0.020 0.980 46 H 0.055 0.945 47 H 0.250 0.750 48 H 0.054 0.946 49 H 0.000 1.000 50 H 0.062 0.938 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.461 4.064 -28.629 29.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.016 3.984 3 C -0.207 4.207 4 C -0.199 4.199 5 C -0.070 4.070 6 C -0.208 4.208 7 C -0.202 4.202 8 C 0.387 3.613 9 O -0.428 6.428 10 N -0.326 5.326 11 C -0.026 4.026 12 H 0.156 0.844 13 C -0.203 4.203 14 C -0.115 4.115 15 C -0.126 4.126 16 C 0.020 3.980 17 N -0.331 5.331 18 C -0.395 4.395 19 H 0.082 0.918 20 C -0.245 4.245 21 N -0.578 5.578 22 Si 0.793 3.207 23 H -0.219 1.219 24 H -0.207 1.207 25 H -0.200 1.200 26 C 0.056 3.944 27 C -0.129 4.129 28 N -0.050 5.050 29 O 0.053 5.947 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.210 0.790 40 H 0.248 0.752 41 H 0.115 0.885 42 H 0.138 0.862 43 H 0.106 0.894 44 H 0.073 0.927 45 H 0.038 0.962 46 H 0.073 0.927 47 H 0.059 0.941 48 H 0.073 0.927 49 H 0.018 0.982 50 H 0.080 0.920 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.982 3.826 -27.734 28.854 hybrid contribution -0.164 0.428 1.056 1.151 sum -7.146 4.253 -26.677 27.944 Atomic orbital electron populations 1.21991 0.90923 1.03317 1.03746 1.19451 0.96818 0.95628 0.86542 1.21952 1.01771 0.93146 1.03820 1.21984 1.01546 1.00841 0.95488 1.25135 0.94816 0.93177 0.93890 1.22534 1.04962 0.97772 0.95488 1.23431 1.03730 0.93988 0.99084 1.17032 0.78547 0.85473 0.80283 1.90752 1.46773 1.33381 1.71846 1.45288 1.50866 1.15060 1.21396 1.21883 1.01116 0.89184 0.90397 0.84414 1.23643 0.92095 1.03182 1.01358 1.21834 1.02543 0.97120 0.89964 1.21552 0.98356 0.97730 0.94928 1.20998 0.96842 0.85749 0.94377 1.44212 1.69351 1.05397 1.14176 1.19467 1.08609 1.16770 0.94617 0.91829 1.25785 0.95658 1.02434 1.00664 1.70174 1.12498 1.31000 1.44134 0.85386 0.77690 0.78175 0.79488 1.21928 1.20695 1.19998 1.20410 0.91885 0.94172 0.87974 1.21460 0.99941 0.93802 0.97743 1.74213 1.19124 1.00488 1.11135 1.84760 1.50875 1.34819 1.24290 0.92641 0.88733 0.91741 0.92098 0.89102 0.92309 0.91727 0.88761 0.92416 0.78963 0.75249 0.88500 0.86204 0.89423 0.92689 0.96187 0.92664 0.94092 0.92744 0.98172 0.91955 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.36 71.98 0.60 -0.41 16 2 C 0.02 0.15 0.94 -52.93 -0.05 0.10 16 3 C -0.15 -1.16 8.07 71.98 0.58 -0.58 16 4 C -0.14 -0.92 8.36 71.98 0.60 -0.32 16 5 C -0.01 -0.11 5.76 25.01 0.14 0.03 16 6 C -0.18 -3.68 10.40 22.60 0.24 -3.44 16 7 C -0.04 -1.17 7.19 42.96 0.31 -0.86 16 8 C 0.60 18.03 7.85 86.93 0.68 18.72 16 9 O -0.55 -18.75 16.52 -3.68 -0.06 -18.81 16 10 N -0.68 -19.52 5.34 -445.17 -2.38 -21.90 16 11 C 0.08 2.29 6.14 44.95 0.28 2.57 16 12 H 0.14 3.98 7.40 -2.39 -0.02 3.97 16 13 C -0.16 -4.55 9.87 30.56 0.30 -4.25 16 14 C -0.11 -3.70 1.94 -52.17 -0.10 -3.81 16 15 C -0.09 -2.90 5.83 30.77 0.18 -2.73 16 16 C 0.15 6.04 6.52 86.43 0.56 6.61 16 17 N -0.61 -30.93 2.94 -699.85 -2.06 -32.99 16 18 C -0.26 -14.77 9.54 84.03 0.80 -13.97 16 19 H 0.06 3.47 7.89 -2.91 -0.02 3.45 16 20 C -0.05 -2.83 4.89 84.86 0.41 -2.41 16 21 N -0.93 -55.71 11.23 21.65 0.24 -55.46 16 22 Si 0.96 45.53 29.59 68.60 2.03 47.56 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 26 C 0.18 8.85 5.37 86.27 0.46 9.32 16 27 C -0.09 -3.46 5.36 30.61 0.16 -3.30 16 28 N -0.35 -9.07 11.84 -49.51 -0.59 -9.65 16 29 O 0.13 2.77 10.65 71.88 0.77 3.54 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.06 0.48 8.04 -2.39 -0.02 0.46 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 0.44 8.02 -2.39 -0.02 0.42 16 37 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.19 3.14 8.06 -2.91 -0.02 3.12 16 40 H 0.41 11.53 6.88 -92.71 -0.64 10.90 16 41 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.09 2.37 8.10 -2.39 -0.02 2.35 16 44 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 45 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.05 2.25 7.92 -2.39 -0.02 2.23 16 47 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 48 H 0.05 3.03 5.94 -2.39 -0.01 3.01 16 49 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 50 H 0.06 2.13 6.75 -2.38 -0.02 2.11 16 51 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -69.42 410.96 4.41 -65.01 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.29 Total: 21.44 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 6.17 Total: 1.27 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -4.78 Total: -120.01 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.70 Total: -15.28 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -69.42 4.41 -65.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016723161.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.299 kcal (2) G-P(sol) polarization free energy of solvation -69.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds