Wall clock time and date at job start Wed Apr 1 2020 05:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47152 * 2 1 4 4 C 1.53009 * 109.46655 * 240.00482 * 2 1 3 5 5 C 1.50699 * 109.47207 * 120.00788 * 2 1 3 6 6 O 1.34259 * 126.51904 * 241.87878 * 5 2 1 7 7 C 1.34055 * 108.22234 * 179.97438 * 6 5 2 8 8 N 1.29934 * 109.24368 * 0.02562 * 7 6 5 9 9 C 1.36071 * 108.47856 * 359.75118 * 8 7 6 10 10 C 1.47418 * 126.44822 * 180.28743 * 9 8 7 11 11 O 1.21618 * 119.99802 * 174.29649 * 10 9 8 12 12 N 1.34773 * 120.00322 * 354.29911 * 10 9 8 13 13 C 1.46501 * 120.00026 * 179.97438 * 12 10 9 14 14 H 1.08990 * 115.55173 * 9.29204 * 13 12 10 15 15 C 1.53033 * 117.50016 * 223.60286 * 13 12 10 16 16 C 1.52817 * 117.50191 * 155.02502 * 13 12 10 17 17 C 1.53191 * 117.71439 * 359.85491 * 16 13 12 18 18 C 1.53349 * 108.77152 * 158.89320 * 17 16 13 19 19 N 1.46839 * 108.81652 * 51.30443 * 18 17 16 20 20 C 1.36939 * 120.38149 * 123.12526 * 19 18 17 21 21 H 1.08001 * 119.99485 * 213.56277 * 20 19 18 22 22 C 1.38812 * 120.00033 * 33.55702 * 20 19 18 23 23 N 1.31615 * 119.99856 * 10.41530 * 22 20 19 24 24 Si 1.86802 * 120.00022 * 190.41466 * 22 20 19 25 25 H 1.48499 * 109.47079 * 59.99967 * 24 22 20 26 26 H 1.48501 * 109.47267 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47002 * 300.00173 * 24 22 20 28 28 C 1.46849 * 119.23497 * 303.10459 * 19 18 17 29 29 C 1.53185 * 117.71618 * 215.10108 * 16 13 12 30 30 H 1.08997 * 109.46928 * 310.10202 * 1 2 3 31 31 H 1.09002 * 109.47091 * 70.10440 * 1 2 3 32 32 H 1.09007 * 109.47207 * 190.10471 * 1 2 3 33 33 H 1.08993 * 109.47288 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47637 * 300.00752 * 3 2 1 35 35 H 1.09004 * 109.46487 * 60.00014 * 3 2 1 36 36 H 1.08998 * 109.47267 * 305.31374 * 4 2 1 37 37 H 1.08995 * 109.47138 * 65.31837 * 4 2 1 38 38 H 1.09005 * 109.46488 * 185.31486 * 4 2 1 39 39 H 1.08001 * 125.37766 * 180.02562 * 7 6 5 40 40 H 0.97007 * 119.99986 * 359.97438 * 12 10 9 41 41 H 1.08996 * 117.50180 * 0.02562 * 15 13 12 42 42 H 1.08999 * 117.49869 * 145.04803 * 15 13 12 43 43 H 1.09005 * 109.58668 * 278.67900 * 17 16 13 44 44 H 1.09002 * 109.58401 * 39.10815 * 17 16 13 45 45 H 1.09003 * 109.57773 * 291.50866 * 18 17 16 46 46 H 1.08996 * 109.58309 * 171.10813 * 18 17 16 47 47 H 0.97003 * 119.99506 * 179.97438 * 23 22 20 48 48 H 1.09002 * 109.57786 * 297.10174 * 28 19 18 49 49 H 1.09005 * 109.57760 * 176.70144 * 28 19 18 50 50 H 1.09003 * 109.58288 * 320.89858 * 29 16 13 51 51 H 1.09000 * 109.59000 * 81.32731 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0324 -0.7106 1.2303 6 8 2.7782 -0.1784 2.2118 7 6 3.0150 -1.1329 3.1228 8 7 2.4450 -2.2374 2.7440 9 6 1.8120 -2.0122 1.5606 10 6 1.0356 -2.9941 0.7820 11 8 0.4302 -2.6403 -0.2117 12 7 0.9965 -4.2838 1.1714 13 6 0.2244 -5.2594 0.3979 14 1 -0.1583 -4.9040 -0.5588 15 6 -0.6360 -6.2570 1.1766 16 6 0.6462 -6.7253 0.4892 17 6 1.8457 -7.0674 1.3786 18 6 1.7762 -8.5535 1.7506 19 7 1.6053 -9.3414 0.5234 20 6 2.5020 -10.3251 0.2014 21 1 2.7354 -10.5250 -0.8339 22 6 3.1110 -11.0649 1.2057 23 7 2.6826 -10.9681 2.4464 24 14 4.5386 -12.1980 0.7963 25 1 5.6491 -11.4038 0.2121 26 1 5.0081 -12.8701 2.0345 27 1 4.0932 -13.2212 -0.1834 28 6 0.4615 -9.0628 -0.3543 29 6 0.5045 -7.5872 -0.7692 30 1 -0.3633 0.6620 0.7860 31 1 -0.3633 0.3497 -0.9663 32 1 -0.3634 -1.0118 0.1803 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9562 0.8900 36 1 1.6010 -1.7177 -1.2983 37 1 1.7564 -0.1553 -2.1367 38 1 3.1258 -0.8044 -1.2031 39 1 3.5889 -1.0042 4.0286 40 1 1.4796 -4.5660 1.9638 41 1 -0.6278 -6.1871 2.2643 42 1 -1.5844 -6.5583 0.7319 43 1 2.7706 -6.8692 0.8369 44 1 1.8133 -6.4620 2.2845 45 1 0.9294 -8.7244 2.4154 46 1 2.6996 -8.8489 2.2488 47 1 3.1080 -11.4854 3.1481 48 1 -0.4668 -9.2653 0.1800 49 1 0.5196 -9.6936 -1.2414 50 1 -0.4178 -7.3266 -1.2885 51 1 1.3571 -7.4171 -1.4266 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016918478.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:54 Heat of formation + Delta-G solvation = 31.495395 kcal Electronic energy + Delta-G solvation = -31455.429900 eV Core-core repulsion = 27357.948863 eV Total energy + Delta-G solvation = -4097.481037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.74136 -39.96106 -38.53264 -37.05258 -35.41497 -35.05317 -33.06165 -31.45551 -30.06943 -29.95303 -28.20622 -27.56008 -27.42977 -24.80633 -24.30195 -23.17938 -22.42483 -21.96025 -21.01054 -20.38060 -19.69641 -18.47682 -18.08788 -17.02452 -16.57745 -16.48449 -15.85303 -15.41873 -15.17027 -14.90931 -14.68385 -14.29477 -14.08798 -14.06130 -13.64072 -13.51406 -13.32724 -13.00965 -12.62469 -12.54794 -12.41487 -12.25910 -11.94600 -11.89917 -11.72160 -11.58012 -11.44045 -11.29128 -11.25242 -11.15293 -10.84484 -10.81644 -10.73086 -10.47647 -10.25225 -10.00327 -9.89806 -9.67803 -9.54084 -9.33523 -9.16824 -8.44915 -8.39635 -6.54048 -5.76512 -3.26595 0.89110 1.82330 2.26745 3.04278 3.13826 3.38855 3.44021 3.45271 3.80583 4.17178 4.21919 4.47956 4.50326 4.64821 4.72469 4.83176 5.01552 5.15972 5.17793 5.23775 5.32269 5.40070 5.40869 5.43328 5.55176 5.59035 5.63466 5.66681 5.73479 5.77926 5.78247 5.89626 5.92122 6.07673 6.09902 6.14056 6.27065 6.30505 6.32786 6.49848 6.61045 6.64815 6.71343 6.74486 6.87006 7.03423 7.17014 7.39182 7.56580 7.71192 7.80862 8.16056 8.52453 9.25549 9.86743 10.45829 11.30807 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017146 B = 0.002430 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.605419 B =11521.311628 C =12157.214438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.023 3.977 3 C -0.146 4.146 4 C -0.159 4.159 5 C 0.057 3.943 6 O -0.197 6.197 7 C 0.171 3.829 8 N -0.461 5.461 9 C -0.075 4.075 10 C 0.601 3.399 11 O -0.526 6.526 12 N -0.674 5.674 13 C 0.066 3.934 14 H 0.134 0.866 15 C -0.181 4.181 16 C -0.095 4.095 17 C -0.106 4.106 18 C 0.176 3.824 19 N -0.589 5.589 20 C -0.254 4.254 21 H 0.062 0.938 22 C 0.005 3.995 23 N -0.904 5.904 24 Si 0.904 3.096 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.149 3.851 29 C -0.097 4.097 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.255 0.745 40 H 0.411 0.589 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.060 0.940 44 H 0.044 0.956 45 H 0.018 0.982 46 H 0.089 0.911 47 H 0.254 0.746 48 H 0.019 0.981 49 H 0.055 0.945 50 H 0.053 0.947 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.743 24.245 -1.231 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.022 3.978 3 C -0.203 4.203 4 C -0.215 4.215 5 C 0.000 4.000 6 O -0.083 6.083 7 C -0.058 4.058 8 N -0.190 5.190 9 C -0.195 4.195 10 C 0.388 3.612 11 O -0.405 6.405 12 N -0.322 5.322 13 C -0.039 4.039 14 H 0.152 0.848 15 C -0.219 4.219 16 C -0.096 4.096 17 C -0.145 4.145 18 C 0.050 3.950 19 N -0.312 5.312 20 C -0.384 4.384 21 H 0.079 0.921 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.733 3.267 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.208 1.208 28 C 0.023 3.977 29 C -0.137 4.137 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.270 0.730 40 H 0.248 0.752 41 H 0.111 0.889 42 H 0.116 0.884 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.036 0.964 46 H 0.107 0.893 47 H 0.064 0.936 48 H 0.037 0.963 49 H 0.073 0.927 50 H 0.071 0.929 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.076 23.807 -1.433 24.048 hybrid contribution 1.181 -0.066 0.389 1.245 sum -1.895 23.741 -1.045 23.840 Atomic orbital electron populations 1.22195 0.91486 1.05328 1.01990 1.19241 0.96824 0.94292 0.87395 1.21941 1.01433 0.94333 1.02598 1.22240 1.00643 1.04117 0.94547 1.23877 0.92801 0.92509 0.90812 1.84377 1.54523 1.41466 1.27893 1.28025 1.01120 0.80822 0.95817 1.70760 1.10407 1.27023 1.10761 1.21434 1.07574 0.94396 0.96065 1.16634 0.79802 0.81393 0.83372 1.90602 1.45355 1.78495 1.26076 1.45223 1.49995 1.06898 1.30060 1.21942 0.99472 0.85484 0.97010 0.84846 1.23530 0.95953 1.02806 0.99632 1.21965 0.96209 0.92328 0.99105 1.21834 0.95152 1.01187 0.96338 1.20734 1.01411 0.84719 0.88152 1.43910 1.25315 1.38366 1.23575 1.19127 1.17236 1.09852 0.92190 0.92057 1.25207 1.00264 0.97735 0.96128 1.69957 1.41598 1.43209 1.00022 0.86361 0.82488 0.80729 0.77085 1.20987 1.21625 1.20843 1.20869 0.90772 0.91764 0.94330 1.21694 1.00302 0.97539 0.94156 0.93348 0.91348 0.88481 0.92233 0.91340 0.92233 0.88104 0.91436 0.93213 0.72952 0.75243 0.88868 0.88357 0.92152 0.93708 0.96396 0.89282 0.93567 0.96261 0.92680 0.92861 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.18 37.16 0.30 -1.22 16 2 C 0.02 0.23 0.75 -155.66 -0.12 0.11 16 3 C -0.15 -1.12 8.05 37.16 0.30 -0.82 16 4 C -0.16 -1.64 8.18 37.16 0.30 -1.33 16 5 C 0.06 0.65 5.73 -35.08 -0.20 0.45 16 6 O -0.20 -1.94 10.19 6.49 0.07 -1.88 16 7 C 0.17 1.49 13.19 51.96 0.69 2.17 16 8 N -0.46 -5.61 11.07 -11.48 -0.13 -5.74 16 9 C -0.07 -0.98 6.79 -83.02 -0.56 -1.54 16 10 C 0.60 8.58 7.36 -12.52 -0.09 8.49 16 11 O -0.53 -7.78 9.64 5.26 0.05 -7.73 16 12 N -0.67 -9.66 5.34 -54.96 -0.29 -9.96 16 13 C 0.07 0.98 6.14 -68.01 -0.42 0.56 16 14 H 0.13 1.97 7.40 -51.93 -0.38 1.59 16 15 C -0.18 -2.67 9.86 -26.80 -0.26 -2.93 16 16 C -0.09 -1.58 1.94 -154.49 -0.30 -1.88 16 17 C -0.11 -2.00 5.37 -26.45 -0.14 -2.14 16 18 C 0.18 4.15 5.34 -3.68 -0.02 4.13 16 19 N -0.59 -14.68 2.92 -172.26 -0.50 -15.18 16 20 C -0.25 -6.95 9.53 -15.06 -0.14 -7.09 16 21 H 0.06 1.65 7.85 -52.49 -0.41 1.24 16 22 C 0.01 0.15 5.04 -17.43 -0.09 0.06 16 23 N -0.90 -26.09 11.12 55.49 0.62 -25.47 16 24 Si 0.90 21.66 29.57 -169.99 -5.03 16.63 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.15 3.11 6.51 -3.67 -0.02 3.09 16 29 C -0.10 -1.69 5.83 -26.46 -0.15 -1.84 16 30 H 0.05 0.43 8.11 -51.93 -0.42 0.01 16 31 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 32 H 0.10 1.20 4.68 -51.92 -0.24 0.95 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 1.28 4.63 -51.93 -0.24 1.04 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.25 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.41 5.87 6.86 -40.82 -0.28 5.59 16 41 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.04 0.76 6.75 -51.93 -0.35 0.41 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 50 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 51 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 397.36 15.07 5.99 5.99 Total: -1.00 -30.98 397.36 -8.27 -39.25 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -8.11 Total: 5.82 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -0.93 Total: -1.75 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.31 Total: -56.35 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.12 Total: -9.60 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.98 -8.27 -39.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016918478.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.747 kcal (2) G-P(sol) polarization free energy of solvation -30.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds