Wall clock time and date at job start Wed Apr 1 2020 05:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47152 * 2 1 4 4 C 1.53009 * 109.46655 * 240.00482 * 2 1 3 5 5 C 1.50699 * 109.47207 * 120.00788 * 2 1 3 6 6 O 1.34259 * 126.51904 * 241.87878 * 5 2 1 7 7 C 1.34055 * 108.22234 * 179.97438 * 6 5 2 8 8 N 1.29934 * 109.24368 * 0.02562 * 7 6 5 9 9 C 1.36071 * 108.47856 * 359.75118 * 8 7 6 10 10 C 1.47418 * 126.44822 * 180.28743 * 9 8 7 11 11 O 1.21618 * 119.99802 * 174.29649 * 10 9 8 12 12 N 1.34773 * 120.00322 * 354.29911 * 10 9 8 13 13 C 1.46501 * 120.00026 * 179.97438 * 12 10 9 14 14 H 1.08990 * 115.55173 * 9.29204 * 13 12 10 15 15 C 1.53033 * 117.50016 * 223.60286 * 13 12 10 16 16 C 1.52817 * 117.50191 * 155.02502 * 13 12 10 17 17 C 1.53191 * 117.71439 * 359.85491 * 16 13 12 18 18 C 1.53349 * 108.77152 * 158.89320 * 17 16 13 19 19 N 1.46839 * 108.81652 * 51.30443 * 18 17 16 20 20 C 1.36939 * 120.38149 * 123.12526 * 19 18 17 21 21 H 1.08001 * 119.99485 * 213.56277 * 20 19 18 22 22 C 1.38812 * 120.00033 * 33.55702 * 20 19 18 23 23 N 1.31615 * 119.99856 * 10.41530 * 22 20 19 24 24 Si 1.86802 * 120.00022 * 190.41466 * 22 20 19 25 25 H 1.48499 * 109.47079 * 59.99967 * 24 22 20 26 26 H 1.48501 * 109.47267 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47002 * 300.00173 * 24 22 20 28 28 C 1.46849 * 119.23497 * 303.10459 * 19 18 17 29 29 C 1.53185 * 117.71618 * 215.10108 * 16 13 12 30 30 H 1.08997 * 109.46928 * 310.10202 * 1 2 3 31 31 H 1.09002 * 109.47091 * 70.10440 * 1 2 3 32 32 H 1.09007 * 109.47207 * 190.10471 * 1 2 3 33 33 H 1.08993 * 109.47288 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47637 * 300.00752 * 3 2 1 35 35 H 1.09004 * 109.46487 * 60.00014 * 3 2 1 36 36 H 1.08998 * 109.47267 * 305.31374 * 4 2 1 37 37 H 1.08995 * 109.47138 * 65.31837 * 4 2 1 38 38 H 1.09005 * 109.46488 * 185.31486 * 4 2 1 39 39 H 1.08001 * 125.37766 * 180.02562 * 7 6 5 40 40 H 0.97007 * 119.99986 * 359.97438 * 12 10 9 41 41 H 1.08996 * 117.50180 * 0.02562 * 15 13 12 42 42 H 1.08999 * 117.49869 * 145.04803 * 15 13 12 43 43 H 1.09005 * 109.58668 * 278.67900 * 17 16 13 44 44 H 1.09002 * 109.58401 * 39.10815 * 17 16 13 45 45 H 1.09003 * 109.57773 * 291.50866 * 18 17 16 46 46 H 1.08996 * 109.58309 * 171.10813 * 18 17 16 47 47 H 0.97003 * 119.99506 * 179.97438 * 23 22 20 48 48 H 1.09002 * 109.57786 * 297.10174 * 28 19 18 49 49 H 1.09005 * 109.57760 * 176.70144 * 28 19 18 50 50 H 1.09003 * 109.58288 * 320.89858 * 29 16 13 51 51 H 1.09000 * 109.59000 * 81.32731 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0324 -0.7106 1.2303 6 8 2.7782 -0.1784 2.2118 7 6 3.0150 -1.1329 3.1228 8 7 2.4450 -2.2374 2.7440 9 6 1.8120 -2.0122 1.5606 10 6 1.0356 -2.9941 0.7820 11 8 0.4302 -2.6403 -0.2117 12 7 0.9965 -4.2838 1.1714 13 6 0.2244 -5.2594 0.3979 14 1 -0.1583 -4.9040 -0.5588 15 6 -0.6360 -6.2570 1.1766 16 6 0.6462 -6.7253 0.4892 17 6 1.8457 -7.0674 1.3786 18 6 1.7762 -8.5535 1.7506 19 7 1.6053 -9.3414 0.5234 20 6 2.5020 -10.3251 0.2014 21 1 2.7354 -10.5250 -0.8339 22 6 3.1110 -11.0649 1.2057 23 7 2.6826 -10.9681 2.4464 24 14 4.5386 -12.1980 0.7963 25 1 5.6491 -11.4038 0.2121 26 1 5.0081 -12.8701 2.0345 27 1 4.0932 -13.2212 -0.1834 28 6 0.4615 -9.0628 -0.3543 29 6 0.5045 -7.5872 -0.7692 30 1 -0.3633 0.6620 0.7860 31 1 -0.3633 0.3497 -0.9663 32 1 -0.3634 -1.0118 0.1803 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9562 0.8900 36 1 1.6010 -1.7177 -1.2983 37 1 1.7564 -0.1553 -2.1367 38 1 3.1258 -0.8044 -1.2031 39 1 3.5889 -1.0042 4.0286 40 1 1.4796 -4.5660 1.9638 41 1 -0.6278 -6.1871 2.2643 42 1 -1.5844 -6.5583 0.7319 43 1 2.7706 -6.8692 0.8369 44 1 1.8133 -6.4620 2.2845 45 1 0.9294 -8.7244 2.4154 46 1 2.6996 -8.8489 2.2488 47 1 3.1080 -11.4854 3.1481 48 1 -0.4668 -9.2653 0.1800 49 1 0.5196 -9.6936 -1.2414 50 1 -0.4178 -7.3266 -1.2885 51 1 1.3571 -7.4171 -1.4266 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016918478.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:52 Heat of formation + Delta-G solvation = 11.483229 kcal Electronic energy + Delta-G solvation = -31456.297692 eV Core-core repulsion = 27357.948863 eV Total energy + Delta-G solvation = -4098.348830 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.53224 -41.12403 -39.81436 -37.90599 -37.02275 -35.89396 -34.47806 -33.19237 -31.75105 -30.81427 -29.86732 -28.23178 -28.19886 -26.27127 -25.71512 -24.04789 -23.91738 -23.17693 -22.46094 -21.56976 -20.53370 -19.83998 -19.29117 -18.30395 -17.82218 -17.47780 -17.08257 -16.75748 -16.20912 -16.12413 -15.80950 -15.48180 -15.42105 -15.25074 -14.91009 -14.82659 -14.62394 -14.41135 -14.16320 -13.75646 -13.37721 -13.16409 -13.15547 -13.00408 -12.93367 -12.74159 -12.63728 -12.59377 -12.57039 -12.36549 -12.17931 -12.03079 -12.02066 -11.91323 -11.80210 -11.63082 -11.31672 -11.24676 -10.93518 -10.69020 -10.50727 -10.02684 -9.60594 -8.54452 -7.84958 -5.38703 0.02648 1.01531 1.46418 1.48249 1.50723 1.55007 2.00747 2.13851 2.50960 2.95596 3.07913 3.30522 3.40427 3.64196 3.69099 3.81634 3.86449 3.91440 3.93488 3.98777 4.08468 4.13491 4.48442 4.53578 4.53987 4.61988 4.72378 4.73711 4.76472 4.84780 4.86756 4.87613 4.93023 4.95578 5.00064 5.01803 5.04839 5.08658 5.16871 5.22375 5.23966 5.30960 5.35663 5.39646 5.45280 5.54585 5.64957 5.66552 5.78562 6.27452 6.44697 6.56072 7.08445 7.18444 7.88575 8.41655 9.19266 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017146 B = 0.002430 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.605419 B =11521.311628 C =12157.214438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.020 3.980 3 C -0.140 4.140 4 C -0.156 4.156 5 C 0.057 3.943 6 O -0.194 6.194 7 C 0.192 3.808 8 N -0.498 5.498 9 C -0.101 4.101 10 C 0.597 3.403 11 O -0.533 6.533 12 N -0.678 5.678 13 C 0.087 3.913 14 H 0.139 0.861 15 C -0.169 4.169 16 C -0.116 4.116 17 C -0.088 4.088 18 C 0.184 3.816 19 N -0.609 5.609 20 C -0.266 4.266 21 H 0.062 0.938 22 C -0.047 4.047 23 N -0.934 5.934 24 Si 0.967 3.033 25 H -0.279 1.279 26 H -0.293 1.293 27 H -0.275 1.275 28 C 0.145 3.855 29 C -0.085 4.085 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.302 0.698 40 H 0.410 0.590 41 H 0.093 0.907 42 H 0.116 0.884 43 H 0.045 0.955 44 H 0.061 0.939 45 H -0.002 1.002 46 H 0.053 0.947 47 H 0.250 0.750 48 H 0.018 0.982 49 H 0.053 0.947 50 H 0.086 0.914 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.766 26.647 -1.751 26.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 C -0.197 4.197 4 C -0.212 4.212 5 C 0.000 4.000 6 O -0.080 6.080 7 C -0.036 4.036 8 N -0.226 5.226 9 C -0.219 4.219 10 C 0.385 3.615 11 O -0.413 6.413 12 N -0.326 5.326 13 C -0.018 4.018 14 H 0.157 0.843 15 C -0.207 4.207 16 C -0.117 4.117 17 C -0.127 4.127 18 C 0.058 3.942 19 N -0.332 5.332 20 C -0.396 4.396 21 H 0.079 0.921 22 C -0.243 4.243 23 N -0.579 5.579 24 Si 0.795 3.205 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.200 1.200 28 C 0.020 3.980 29 C -0.124 4.124 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.066 0.934 39 H 0.317 0.683 40 H 0.246 0.754 41 H 0.112 0.888 42 H 0.134 0.866 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.016 0.984 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.036 0.964 49 H 0.072 0.928 50 H 0.104 0.896 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.120 26.226 -1.982 26.485 hybrid contribution 1.181 -0.758 0.576 1.517 sum -1.939 25.468 -1.406 25.580 Atomic orbital electron populations 1.22127 0.91587 1.03951 1.02932 1.19341 0.96726 0.95457 0.86502 1.21906 1.01470 0.92744 1.03612 1.22179 1.00280 1.03096 0.95680 1.24125 0.92457 0.92117 0.91344 1.84410 1.54235 1.41575 1.27808 1.29135 0.99072 0.79500 0.95935 1.70739 1.12027 1.28816 1.11055 1.21349 1.08792 0.94853 0.96914 1.16867 0.79785 0.81461 0.83410 1.90609 1.45630 1.78658 1.26404 1.45230 1.50286 1.07064 1.30060 1.21808 0.98442 0.84267 0.97306 0.84312 1.23605 0.95661 1.01677 0.99786 1.21815 0.96564 0.94304 0.99066 1.21518 0.95887 0.97925 0.97419 1.20487 0.98637 0.87510 0.87528 1.44170 1.26371 1.38386 1.24253 1.19444 1.17750 1.10134 0.92287 0.92084 1.25947 1.02826 0.99481 0.96049 1.70123 1.42851 1.44204 1.00767 0.85353 0.79530 0.78905 0.76694 1.20472 1.21888 1.20046 1.21007 0.89214 0.94323 0.93461 1.21522 1.01573 0.94861 0.94420 0.92549 0.90183 0.90945 0.92118 0.89794 0.91788 0.90564 0.89746 0.93446 0.68291 0.75366 0.88840 0.86581 0.93616 0.92063 0.98354 0.92895 0.94075 0.96401 0.92804 0.89577 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.18 71.98 0.59 -2.16 16 2 C 0.02 0.37 0.75 -52.92 -0.04 0.33 16 3 C -0.14 -1.81 8.05 71.98 0.58 -1.23 16 4 C -0.16 -3.03 8.18 71.99 0.59 -2.44 16 5 C 0.06 1.22 5.73 25.18 0.14 1.37 16 6 O -0.19 -3.40 10.19 0.32 0.00 -3.40 16 7 C 0.19 2.88 13.19 130.52 1.72 4.60 16 8 N -0.50 -11.55 11.07 -305.15 -3.38 -14.92 16 9 C -0.10 -2.56 6.79 40.40 0.27 -2.28 16 10 C 0.60 16.81 7.36 86.66 0.64 17.45 16 11 O -0.53 -15.56 9.64 -4.09 -0.04 -15.60 16 12 N -0.68 -19.07 5.34 -446.05 -2.38 -21.45 16 13 C 0.09 2.46 6.14 44.94 0.28 2.73 16 14 H 0.14 3.83 7.40 -2.39 -0.02 3.81 16 15 C -0.17 -4.70 9.86 30.55 0.30 -4.40 16 16 C -0.12 -3.78 1.94 -52.17 -0.10 -3.89 16 17 C -0.09 -3.39 5.37 30.78 0.17 -3.22 16 18 C 0.18 9.01 5.34 86.43 0.46 9.47 16 19 N -0.61 -31.02 2.92 -698.91 -2.04 -33.06 16 20 C -0.27 -14.84 9.53 84.03 0.80 -14.04 16 21 H 0.06 3.34 7.85 -2.91 -0.02 3.31 16 22 C -0.05 -2.68 5.04 84.86 0.43 -2.25 16 23 N -0.93 -55.68 11.12 21.65 0.24 -55.44 16 24 Si 0.97 45.31 29.57 68.60 2.03 47.34 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 27 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 28 C 0.15 6.06 6.51 86.43 0.56 6.63 16 29 C -0.08 -2.84 5.83 30.77 0.18 -2.66 16 30 H 0.06 0.92 8.11 -2.39 -0.02 0.90 16 31 H 0.08 1.25 8.11 -2.39 -0.02 1.23 16 32 H 0.07 1.74 4.68 -2.38 -0.01 1.73 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 36 H 0.08 1.91 4.63 -2.39 -0.01 1.90 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.30 0.89 8.06 -2.91 -0.02 0.87 16 40 H 0.41 11.60 6.86 -92.70 -0.64 10.96 16 41 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 43 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 44 H 0.06 2.11 6.75 -2.39 -0.02 2.09 16 45 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 46 H 0.05 2.95 6.06 -2.39 -0.01 2.94 16 47 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 48 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.05 2.21 7.92 -2.38 -0.02 2.19 16 50 H 0.09 2.33 8.10 -2.39 -0.02 2.31 16 51 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -69.37 397.36 2.31 -67.06 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.31 Total: 25.46 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 7.57 Total: 4.01 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -7.56 Total: -124.87 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.04 Total: -19.00 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -69.37 2.31 -67.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016918478.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.543 kcal (2) G-P(sol) polarization free energy of solvation -69.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds