Wall clock time and date at job start Wed Apr 1 2020 05:07:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52993 * 109.47315 * 2 1
4 4 C 1.50699 * 109.47300 * 179.97438 * 3 2 1
5 5 O 1.33490 * 126.83232 * 270.10917 * 4 3 2
6 6 N 1.20655 * 113.15519 * 180.29715 * 5 4 3
7 7 C 1.30010 * 112.30554 * 359.75884 * 6 5 4
8 8 C 1.50701 * 127.33677 * 179.97438 * 7 6 5
9 9 C 1.37362 * 126.82586 * 90.00030 * 4 3 2
10 10 C 1.47399 * 128.56433 * 0.02562 * 9 4 3
11 11 O 1.21616 * 119.99756 * 269.69591 * 10 9 4
12 12 N 1.34777 * 120.00243 * 89.69977 * 10 9 4
13 13 C 1.46502 * 120.00140 * 179.97438 * 12 10 9
14 14 C 1.53147 * 109.43219 * 120.18107 * 13 12 10
15 15 C 1.53708 * 108.87683 * 66.13361 * 14 13 12
16 16 H 1.08999 * 112.09722 * 188.24905 * 15 14 13
17 17 C 1.54604 * 107.83057 * 312.22327 * 15 14 13
18 18 C 1.54313 * 104.84952 * 88.61136 * 17 15 14
19 19 C 1.54868 * 104.62668 * 0.08454 * 18 17 15
20 20 H 1.08997 * 112.70280 * 147.03143 * 19 18 17
21 21 C 1.53140 * 109.39834 * 240.38409 * 13 12 10
22 22 N 1.48287 * 107.27594 * 64.00571 * 15 14 13
23 23 C 1.36941 * 128.21535 * 107.41514 * 22 15 14
24 24 H 1.07995 * 120.00416 * 162.63824 * 23 22 15
25 25 C 1.38819 * 119.99528 * 342.64150 * 23 22 15
26 26 N 1.31615 * 119.99844 * 2.56794 * 25 23 22
27 27 Si 1.86802 * 119.99709 * 182.56854 * 25 23 22
28 28 H 1.48498 * 109.46822 * 60.00142 * 27 25 23
29 29 H 1.48497 * 109.46622 * 179.97438 * 27 25 23
30 30 H 1.48497 * 109.47108 * 300.00031 * 27 25 23
31 31 H 1.08997 * 109.47514 * 59.99836 * 1 2 3
32 32 H 1.09003 * 109.47466 * 179.97438 * 1 2 3
33 33 H 1.09005 * 109.46995 * 299.99569 * 1 2 3
34 34 H 1.09000 * 109.46424 * 240.00018 * 2 1 3
35 35 H 1.09000 * 109.46897 * 120.00855 * 2 1 3
36 36 H 1.09001 * 109.47163 * 60.00075 * 3 2 1
37 37 H 1.09005 * 109.47149 * 300.00258 * 3 2 1
38 38 H 1.08996 * 109.47501 * 269.99746 * 8 7 6
39 39 H 1.08994 * 109.47253 * 30.00292 * 8 7 6
40 40 H 1.09009 * 109.46751 * 149.99754 * 8 7 6
41 41 H 0.96998 * 119.99876 * 359.97438 * 12 10 9
42 42 H 1.08998 * 109.43567 * 0.27653 * 13 12 10
43 43 H 1.09001 * 109.57460 * 306.31699 * 14 13 12
44 44 H 1.09001 * 109.57079 * 185.94752 * 14 13 12
45 45 H 1.09007 * 110.38227 * 207.47701 * 17 15 14
46 46 H 1.09001 * 110.38891 * 329.73616 * 17 15 14
47 47 H 1.08997 * 110.38653 * 118.87179 * 18 17 15
48 48 H 1.09000 * 110.37990 * 241.23905 * 18 17 15
49 49 H 1.08997 * 109.57419 * 53.66896 * 21 13 12
50 50 H 1.09002 * 109.57022 * 173.90678 * 21 13 12
51 51 H 0.97008 * 119.99509 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 3.5470 1.4424 0.0006
5 8 4.3468 1.4405 1.0694
6 7 5.5193 1.4468 0.7846
7 6 5.7149 1.4488 -0.5007
8 6 7.0369 1.4567 -1.2240
9 6 4.3708 1.4423 -1.0985
10 6 3.9996 1.4426 -2.5250
11 8 3.8515 0.3895 -3.1150
12 7 3.8244 2.6099 -3.1756
13 6 3.4560 2.6102 -4.5935
14 6 2.1160 3.3299 -4.7716
15 6 2.2976 4.8142 -4.4161
16 1 1.3476 5.3477 -4.3853
17 6 3.0536 4.8894 -3.0696
18 6 4.5479 4.8885 -3.4544
19 6 4.5534 4.8148 -5.0013
20 1 5.3920 5.3513 -5.4450
21 6 4.5400 3.3305 -5.4005
22 7 3.2459 5.3899 -5.4001
23 6 2.9780 6.2489 -6.4324
24 1 3.7803 6.8052 -6.8941
25 6 1.6750 6.4046 -6.8853
26 7 0.6906 5.7653 -6.2899
27 14 1.3190 7.5214 -8.3398
28 1 2.0572 7.0320 -9.5318
29 1 -0.1385 7.5149 -8.6236
30 1 1.7556 8.9043 -8.0205
31 1 -0.3634 0.5138 -0.8899
32 1 -0.3634 -1.0277 -0.0005
33 1 -0.3633 0.5138 0.8901
34 1 1.8932 -0.5139 -0.8900
35 1 1.8933 -0.5140 0.8899
36 1 1.6767 1.9563 0.8900
37 1 1.6767 1.9563 -0.8900
38 1 7.3500 2.4862 -1.3977
39 1 7.7857 0.9466 -0.6180
40 1 6.9313 0.9428 -2.1795
41 1 3.9422 3.4498 -2.7049
42 1 3.3651 1.5824 -4.9448
43 1 1.3718 2.8848 -4.1113
44 1 1.7882 3.2401 -5.8073
45 1 2.7982 5.8083 -2.5416
46 1 2.8196 4.0210 -2.4537
47 1 5.0278 5.8067 -3.1158
48 1 5.0487 4.0185 -3.0296
49 1 5.5116 2.8858 -5.1854
50 1 4.3243 3.2388 -6.4650
51 1 -0.2199 5.8745 -6.6062
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001021255067.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:07:18
Heat of formation + Delta-G solvation = 109.244583 kcal
Electronic energy + Delta-G solvation = -33018.015938 eV
Core-core repulsion = 28923.906359 eV
Total energy + Delta-G solvation = -4094.109579 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-44.93061 -41.09419 -38.37269 -35.78983 -34.61690 -34.22525 -32.25917 -31.96319
-31.17555 -30.32869 -29.13628 -28.82753 -27.29335 -25.12850 -24.06972 -23.36718
-22.07719 -21.65475 -20.60676 -20.04848 -19.64503 -19.28680 -18.04184 -17.69790
-16.98562 -16.50793 -15.48740 -15.35891 -14.94141 -14.58752 -14.28911 -14.04225
-13.76472 -13.65382 -13.48083 -13.26019 -13.17119 -12.98888 -12.91770 -12.80110
-12.55277 -12.20767 -12.15938 -11.77598 -11.70880 -11.60357 -11.53708 -11.28977
-11.04613 -10.92941 -10.84489 -10.71825 -10.47914 -10.35643 -10.08889 -10.04197
-9.89161 -9.66389 -9.54879 -9.46735 -9.40325 -8.68450 -8.29183 -6.87709
-5.82497 -3.21977 1.24073 1.84663 2.58421 2.78426 3.34678 3.40369
3.40610 3.56199 4.06799 4.14841 4.39987 4.69794 4.73952 4.78787
5.01580 5.05543 5.09745 5.26192 5.28078 5.32314 5.37611 5.40740
5.43542 5.48455 5.55235 5.56494 5.60606 5.61298 5.72126 5.78206
5.86529 5.90594 5.93972 5.94817 5.98003 6.09546 6.11659 6.25250
6.46538 6.46835 6.49797 6.55942 6.72226 6.81733 6.92207 7.04232
7.41471 7.52425 7.68245 7.79302 8.13992 8.18417 8.41759 9.06961
9.68053 10.45987 11.27424
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.014749 B = 0.003427 C = 0.003068
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1897.936529 B = 8169.174792 C = 9124.423651
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.122 4.122
3 C -0.045 4.045
4 C 0.017 3.983
5 O 0.095 5.905
6 N -0.358 5.358
7 C 0.051 3.949
8 C -0.078 4.078
9 C -0.242 4.242
10 C 0.579 3.421
11 O -0.541 6.541
12 N -0.722 5.722
13 C 0.141 3.859
14 C -0.124 4.124
15 C 0.178 3.822
16 H 0.122 0.878
17 C -0.174 4.174
18 C -0.163 4.163
19 C 0.151 3.849
20 H 0.069 0.931
21 C -0.137 4.137
22 N -0.582 5.582
23 C -0.226 4.226
24 H 0.075 0.925
25 C 0.000 4.000
26 N -0.913 5.913
27 Si 0.910 3.090
28 H -0.285 1.285
29 H -0.290 1.290
30 H -0.285 1.285
31 H 0.060 0.940
32 H 0.058 0.942
33 H 0.057 0.943
34 H 0.073 0.927
35 H 0.067 0.933
36 H 0.095 0.905
37 H 0.101 0.899
38 H 0.086 0.914
39 H 0.081 0.919
40 H 0.085 0.915
41 H 0.430 0.570
42 H 0.084 0.916
43 H 0.044 0.956
44 H 0.082 0.918
45 H 0.060 0.940
46 H 0.073 0.927
47 H 0.060 0.940
48 H 0.077 0.923
49 H 0.048 0.952
50 H 0.075 0.925
51 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.658 -7.842 12.746 15.674
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.160 4.160
3 C -0.083 4.083
4 C -0.046 4.046
5 O 0.033 5.967
6 N -0.065 5.065
7 C -0.111 4.111
8 C -0.136 4.136
9 C -0.249 4.249
10 C 0.363 3.637
11 O -0.419 6.419
12 N -0.394 5.394
13 C 0.037 3.963
14 C -0.164 4.164
15 C 0.071 3.929
16 H 0.140 0.860
17 C -0.214 4.214
18 C -0.202 4.202
19 C 0.042 3.958
20 H 0.087 0.913
21 C -0.178 4.178
22 N -0.303 5.303
23 C -0.354 4.354
24 H 0.092 0.908
25 C -0.197 4.197
26 N -0.559 5.559
27 Si 0.740 3.260
28 H -0.211 1.211
29 H -0.216 1.216
30 H -0.212 1.212
31 H 0.079 0.921
32 H 0.078 0.922
33 H 0.076 0.924
34 H 0.092 0.908
35 H 0.086 0.914
36 H 0.113 0.887
37 H 0.119 0.881
38 H 0.104 0.896
39 H 0.100 0.900
40 H 0.103 0.897
41 H 0.290 0.710
42 H 0.102 0.898
43 H 0.063 0.937
44 H 0.101 0.899
45 H 0.078 0.922
46 H 0.091 0.909
47 H 0.079 0.921
48 H 0.095 0.905
49 H 0.067 0.933
50 H 0.093 0.907
51 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 5.140 -8.368 13.226 16.473
hybrid contribution -0.348 0.794 -1.277 1.544
sum 4.792 -7.573 11.949 14.936
Atomic orbital electron populations
1.21755 0.94570 1.02222 1.02328 1.21540 0.96630 0.94506 1.03294
1.20390 0.82847 0.99691 1.05352 1.24651 0.95710 0.99160 0.85114
1.84504 1.11108 1.68019 1.33025 1.73586 0.95989 1.20315 1.16625
1.24745 0.96160 1.01106 0.89050 1.20233 0.89700 1.03875 0.99781
1.22119 0.92787 1.14357 0.95685 1.17172 0.77348 0.85270 0.83906
1.90771 1.51530 1.32045 1.67531 1.49171 1.67795 1.09337 1.13126
1.21175 0.95858 1.00416 0.78829 1.22386 0.93235 0.98038 1.02727
1.21654 0.95823 0.91530 0.83859 0.86022 1.23452 0.95834 1.00573
1.01507 1.23325 0.96734 1.00746 0.99415 1.21570 0.91074 0.91640
0.91470 0.91312 1.22501 0.96813 0.97985 1.00461 1.45106 1.01598
1.51551 1.32056 1.18936 0.93297 1.15618 1.07565 0.90752 1.24877
0.95999 0.99946 0.98920 1.69744 0.99228 1.45302 1.41607 0.86237
0.77012 0.80081 0.82634 1.21121 1.21593 1.21200 0.92070 0.92244
0.92423 0.90816 0.91420 0.88677 0.88079 0.89551 0.90038 0.89656
0.70972 0.89788 0.93712 0.89898 0.92151 0.90895 0.92111 0.90532
0.93317 0.90669 0.93506
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16
2 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16
3 C -0.04 -0.44 5.66 -27.89 -0.16 -0.60 16
4 C 0.02 0.21 6.80 -34.63 -0.24 -0.02 16
5 O 0.10 1.22 11.06 18.66 0.21 1.43 16
6 N -0.36 -4.92 12.01 34.78 0.42 -4.50 16
7 C 0.05 0.68 7.59 -79.77 -0.61 0.08 16
8 C -0.08 -0.81 10.49 36.01 0.38 -0.44 16
9 C -0.24 -3.42 6.24 -102.89 -0.64 -4.06 16
10 C 0.58 9.30 7.60 -12.53 -0.10 9.20 16
11 O -0.54 -10.40 16.43 5.26 0.09 -10.31 16
12 N -0.72 -11.23 2.77 -54.74 -0.15 -11.38 16
13 C 0.14 2.49 3.15 -67.78 -0.21 2.27 16
14 C -0.12 -2.45 5.49 -26.29 -0.14 -2.60 16
15 C 0.18 3.77 3.18 -65.74 -0.21 3.56 16
16 H 0.12 2.99 6.09 -51.93 -0.32 2.68 16
17 C -0.17 -2.97 5.75 -25.20 -0.14 -3.11 16
18 C -0.16 -2.61 5.77 -25.06 -0.14 -2.75 16
19 C 0.15 2.82 4.33 -65.59 -0.28 2.54 16
20 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16
21 C -0.14 -2.42 5.49 -26.29 -0.14 -2.56 16
22 N -0.58 -13.27 2.83 -152.60 -0.43 -13.71 16
23 C -0.23 -5.79 10.39 -15.05 -0.16 -5.95 16
24 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16
25 C 0.00 -0.01 5.49 -17.43 -0.10 -0.10 16
26 N -0.91 -24.39 10.55 55.49 0.59 -23.80 16
27 Si 0.91 20.87 29.55 -169.99 -5.02 15.84 16
28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
29 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
30 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16
31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16
37 H 0.10 1.05 8.11 -51.93 -0.42 0.63 16
38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16
39 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16
40 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16
41 H 0.43 6.33 1.87 -66.62 -0.12 6.21 16
42 H 0.08 1.57 6.89 -51.93 -0.36 1.22 16
43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16
44 H 0.08 1.90 8.14 -51.93 -0.42 1.47 16
45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
46 H 0.07 1.12 5.27 -51.93 -0.27 0.85 16
47 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
48 H 0.08 1.11 5.26 -51.93 -0.27 0.83 16
49 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
50 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16
51 H 0.25 6.72 8.31 -40.82 -0.34 6.39 16
LS Contribution 395.70 15.07 5.96 5.96
Total: -1.00 -29.07 395.70 -9.11 -38.18
By element:
Atomic # 1 Polarization: 17.10 SS G_CDS: -8.08 Total: 9.02 kcal
Atomic # 6 Polarization: -4.04 SS G_CDS: -2.69 Total: -6.73 kcal
Atomic # 7 Polarization: -53.81 SS G_CDS: 0.42 Total: -53.39 kcal
Atomic # 8 Polarization: -9.18 SS G_CDS: 0.29 Total: -8.89 kcal
Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal
Total LS contribution 5.96 Total: 5.96 kcal
Total: -29.07 -9.11 -38.18 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001021255067.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 147.425 kcal
(2) G-P(sol) polarization free energy of solvation -29.071 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.355 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal
(6) G-S(sol) free energy of system = (1) + (5) 109.245 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds