Wall clock time and date at job start Wed Apr 1 2020 05:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47315 * 2 1 4 4 C 1.50699 * 109.47300 * 179.97438 * 3 2 1 5 5 O 1.33490 * 126.83232 * 270.10917 * 4 3 2 6 6 N 1.20655 * 113.15519 * 180.29715 * 5 4 3 7 7 C 1.30010 * 112.30554 * 359.75884 * 6 5 4 8 8 C 1.50701 * 127.33677 * 179.97438 * 7 6 5 9 9 C 1.37362 * 126.82586 * 90.00030 * 4 3 2 10 10 C 1.47399 * 128.56433 * 0.02562 * 9 4 3 11 11 O 1.21616 * 119.99756 * 269.69591 * 10 9 4 12 12 N 1.34777 * 120.00243 * 89.69977 * 10 9 4 13 13 C 1.46502 * 120.00140 * 179.97438 * 12 10 9 14 14 C 1.53147 * 109.43219 * 120.18107 * 13 12 10 15 15 C 1.53708 * 108.87683 * 66.13361 * 14 13 12 16 16 H 1.08999 * 112.09722 * 188.24905 * 15 14 13 17 17 C 1.54604 * 107.83057 * 312.22327 * 15 14 13 18 18 C 1.54313 * 104.84952 * 88.61136 * 17 15 14 19 19 C 1.54868 * 104.62668 * 0.08454 * 18 17 15 20 20 H 1.08997 * 112.70280 * 147.03143 * 19 18 17 21 21 C 1.53140 * 109.39834 * 240.38409 * 13 12 10 22 22 N 1.48287 * 107.27594 * 64.00571 * 15 14 13 23 23 C 1.36941 * 128.21535 * 107.41514 * 22 15 14 24 24 H 1.07995 * 120.00416 * 162.63824 * 23 22 15 25 25 C 1.38819 * 119.99528 * 342.64150 * 23 22 15 26 26 N 1.31615 * 119.99844 * 2.56794 * 25 23 22 27 27 Si 1.86802 * 119.99709 * 182.56854 * 25 23 22 28 28 H 1.48498 * 109.46822 * 60.00142 * 27 25 23 29 29 H 1.48497 * 109.46622 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47108 * 300.00031 * 27 25 23 31 31 H 1.08997 * 109.47514 * 59.99836 * 1 2 3 32 32 H 1.09003 * 109.47466 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46995 * 299.99569 * 1 2 3 34 34 H 1.09000 * 109.46424 * 240.00018 * 2 1 3 35 35 H 1.09000 * 109.46897 * 120.00855 * 2 1 3 36 36 H 1.09001 * 109.47163 * 60.00075 * 3 2 1 37 37 H 1.09005 * 109.47149 * 300.00258 * 3 2 1 38 38 H 1.08996 * 109.47501 * 269.99746 * 8 7 6 39 39 H 1.08994 * 109.47253 * 30.00292 * 8 7 6 40 40 H 1.09009 * 109.46751 * 149.99754 * 8 7 6 41 41 H 0.96998 * 119.99876 * 359.97438 * 12 10 9 42 42 H 1.08998 * 109.43567 * 0.27653 * 13 12 10 43 43 H 1.09001 * 109.57460 * 306.31699 * 14 13 12 44 44 H 1.09001 * 109.57079 * 185.94752 * 14 13 12 45 45 H 1.09007 * 110.38227 * 207.47701 * 17 15 14 46 46 H 1.09001 * 110.38891 * 329.73616 * 17 15 14 47 47 H 1.08997 * 110.38653 * 118.87179 * 18 17 15 48 48 H 1.09000 * 110.37990 * 241.23905 * 18 17 15 49 49 H 1.08997 * 109.57419 * 53.66896 * 21 13 12 50 50 H 1.09002 * 109.57022 * 173.90678 * 21 13 12 51 51 H 0.97008 * 119.99509 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.3468 1.4405 1.0694 6 7 5.5193 1.4468 0.7846 7 6 5.7149 1.4488 -0.5007 8 6 7.0369 1.4567 -1.2240 9 6 4.3708 1.4423 -1.0985 10 6 3.9996 1.4426 -2.5250 11 8 3.8515 0.3895 -3.1150 12 7 3.8244 2.6099 -3.1756 13 6 3.4560 2.6102 -4.5935 14 6 2.1160 3.3299 -4.7716 15 6 2.2976 4.8142 -4.4161 16 1 1.3476 5.3477 -4.3853 17 6 3.0536 4.8894 -3.0696 18 6 4.5479 4.8885 -3.4544 19 6 4.5534 4.8148 -5.0013 20 1 5.3920 5.3513 -5.4450 21 6 4.5400 3.3305 -5.4005 22 7 3.2459 5.3899 -5.4001 23 6 2.9780 6.2489 -6.4324 24 1 3.7803 6.8052 -6.8941 25 6 1.6750 6.4046 -6.8853 26 7 0.6906 5.7653 -6.2899 27 14 1.3190 7.5214 -8.3398 28 1 2.0572 7.0320 -9.5318 29 1 -0.1385 7.5149 -8.6236 30 1 1.7556 8.9043 -8.0205 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8932 -0.5139 -0.8900 35 1 1.8933 -0.5140 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 7.3500 2.4862 -1.3977 39 1 7.7857 0.9466 -0.6180 40 1 6.9313 0.9428 -2.1795 41 1 3.9422 3.4498 -2.7049 42 1 3.3651 1.5824 -4.9448 43 1 1.3718 2.8848 -4.1113 44 1 1.7882 3.2401 -5.8073 45 1 2.7982 5.8083 -2.5416 46 1 2.8196 4.0210 -2.4537 47 1 5.0278 5.8067 -3.1158 48 1 5.0487 4.0185 -3.0296 49 1 5.5116 2.8858 -5.1854 50 1 4.3243 3.2388 -6.4650 51 1 -0.2199 5.8745 -6.6062 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021255067.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:18 Heat of formation + Delta-G solvation = 109.244583 kcal Electronic energy + Delta-G solvation = -33018.015938 eV Core-core repulsion = 28923.906359 eV Total energy + Delta-G solvation = -4094.109579 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.93061 -41.09419 -38.37269 -35.78983 -34.61690 -34.22525 -32.25917 -31.96319 -31.17555 -30.32869 -29.13628 -28.82753 -27.29335 -25.12850 -24.06972 -23.36718 -22.07719 -21.65475 -20.60676 -20.04848 -19.64503 -19.28680 -18.04184 -17.69790 -16.98562 -16.50793 -15.48740 -15.35891 -14.94141 -14.58752 -14.28911 -14.04225 -13.76472 -13.65382 -13.48083 -13.26019 -13.17119 -12.98888 -12.91770 -12.80110 -12.55277 -12.20767 -12.15938 -11.77598 -11.70880 -11.60357 -11.53708 -11.28977 -11.04613 -10.92941 -10.84489 -10.71825 -10.47914 -10.35643 -10.08889 -10.04197 -9.89161 -9.66389 -9.54879 -9.46735 -9.40325 -8.68450 -8.29183 -6.87709 -5.82497 -3.21977 1.24073 1.84663 2.58421 2.78426 3.34678 3.40369 3.40610 3.56199 4.06799 4.14841 4.39987 4.69794 4.73952 4.78787 5.01580 5.05543 5.09745 5.26192 5.28078 5.32314 5.37611 5.40740 5.43542 5.48455 5.55235 5.56494 5.60606 5.61298 5.72126 5.78206 5.86529 5.90594 5.93972 5.94817 5.98003 6.09546 6.11659 6.25250 6.46538 6.46835 6.49797 6.55942 6.72226 6.81733 6.92207 7.04232 7.41471 7.52425 7.68245 7.79302 8.13992 8.18417 8.41759 9.06961 9.68053 10.45987 11.27424 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.003427 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.936529 B = 8169.174792 C = 9124.423651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.045 4.045 4 C 0.017 3.983 5 O 0.095 5.905 6 N -0.358 5.358 7 C 0.051 3.949 8 C -0.078 4.078 9 C -0.242 4.242 10 C 0.579 3.421 11 O -0.541 6.541 12 N -0.722 5.722 13 C 0.141 3.859 14 C -0.124 4.124 15 C 0.178 3.822 16 H 0.122 0.878 17 C -0.174 4.174 18 C -0.163 4.163 19 C 0.151 3.849 20 H 0.069 0.931 21 C -0.137 4.137 22 N -0.582 5.582 23 C -0.226 4.226 24 H 0.075 0.925 25 C 0.000 4.000 26 N -0.913 5.913 27 Si 0.910 3.090 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.430 0.570 42 H 0.084 0.916 43 H 0.044 0.956 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.077 0.923 49 H 0.048 0.952 50 H 0.075 0.925 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 -7.842 12.746 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.083 4.083 4 C -0.046 4.046 5 O 0.033 5.967 6 N -0.065 5.065 7 C -0.111 4.111 8 C -0.136 4.136 9 C -0.249 4.249 10 C 0.363 3.637 11 O -0.419 6.419 12 N -0.394 5.394 13 C 0.037 3.963 14 C -0.164 4.164 15 C 0.071 3.929 16 H 0.140 0.860 17 C -0.214 4.214 18 C -0.202 4.202 19 C 0.042 3.958 20 H 0.087 0.913 21 C -0.178 4.178 22 N -0.303 5.303 23 C -0.354 4.354 24 H 0.092 0.908 25 C -0.197 4.197 26 N -0.559 5.559 27 Si 0.740 3.260 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.212 1.212 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.290 0.710 42 H 0.102 0.898 43 H 0.063 0.937 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.095 0.905 49 H 0.067 0.933 50 H 0.093 0.907 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.140 -8.368 13.226 16.473 hybrid contribution -0.348 0.794 -1.277 1.544 sum 4.792 -7.573 11.949 14.936 Atomic orbital electron populations 1.21755 0.94570 1.02222 1.02328 1.21540 0.96630 0.94506 1.03294 1.20390 0.82847 0.99691 1.05352 1.24651 0.95710 0.99160 0.85114 1.84504 1.11108 1.68019 1.33025 1.73586 0.95989 1.20315 1.16625 1.24745 0.96160 1.01106 0.89050 1.20233 0.89700 1.03875 0.99781 1.22119 0.92787 1.14357 0.95685 1.17172 0.77348 0.85270 0.83906 1.90771 1.51530 1.32045 1.67531 1.49171 1.67795 1.09337 1.13126 1.21175 0.95858 1.00416 0.78829 1.22386 0.93235 0.98038 1.02727 1.21654 0.95823 0.91530 0.83859 0.86022 1.23452 0.95834 1.00573 1.01507 1.23325 0.96734 1.00746 0.99415 1.21570 0.91074 0.91640 0.91470 0.91312 1.22501 0.96813 0.97985 1.00461 1.45106 1.01598 1.51551 1.32056 1.18936 0.93297 1.15618 1.07565 0.90752 1.24877 0.95999 0.99946 0.98920 1.69744 0.99228 1.45302 1.41607 0.86237 0.77012 0.80081 0.82634 1.21121 1.21593 1.21200 0.92070 0.92244 0.92423 0.90816 0.91420 0.88677 0.88079 0.89551 0.90038 0.89656 0.70972 0.89788 0.93712 0.89898 0.92151 0.90895 0.92111 0.90532 0.93317 0.90669 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 3 C -0.04 -0.44 5.66 -27.89 -0.16 -0.60 16 4 C 0.02 0.21 6.80 -34.63 -0.24 -0.02 16 5 O 0.10 1.22 11.06 18.66 0.21 1.43 16 6 N -0.36 -4.92 12.01 34.78 0.42 -4.50 16 7 C 0.05 0.68 7.59 -79.77 -0.61 0.08 16 8 C -0.08 -0.81 10.49 36.01 0.38 -0.44 16 9 C -0.24 -3.42 6.24 -102.89 -0.64 -4.06 16 10 C 0.58 9.30 7.60 -12.53 -0.10 9.20 16 11 O -0.54 -10.40 16.43 5.26 0.09 -10.31 16 12 N -0.72 -11.23 2.77 -54.74 -0.15 -11.38 16 13 C 0.14 2.49 3.15 -67.78 -0.21 2.27 16 14 C -0.12 -2.45 5.49 -26.29 -0.14 -2.60 16 15 C 0.18 3.77 3.18 -65.74 -0.21 3.56 16 16 H 0.12 2.99 6.09 -51.93 -0.32 2.68 16 17 C -0.17 -2.97 5.75 -25.20 -0.14 -3.11 16 18 C -0.16 -2.61 5.77 -25.06 -0.14 -2.75 16 19 C 0.15 2.82 4.33 -65.59 -0.28 2.54 16 20 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 21 C -0.14 -2.42 5.49 -26.29 -0.14 -2.56 16 22 N -0.58 -13.27 2.83 -152.60 -0.43 -13.71 16 23 C -0.23 -5.79 10.39 -15.05 -0.16 -5.95 16 24 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 25 C 0.00 -0.01 5.49 -17.43 -0.10 -0.10 16 26 N -0.91 -24.39 10.55 55.49 0.59 -23.80 16 27 Si 0.91 20.87 29.55 -169.99 -5.02 15.84 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 30 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.05 8.11 -51.93 -0.42 0.63 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 41 H 0.43 6.33 1.87 -66.62 -0.12 6.21 16 42 H 0.08 1.57 6.89 -51.93 -0.36 1.22 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.08 1.90 8.14 -51.93 -0.42 1.47 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.07 1.12 5.27 -51.93 -0.27 0.85 16 47 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.08 1.11 5.26 -51.93 -0.27 0.83 16 49 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 51 H 0.25 6.72 8.31 -40.82 -0.34 6.39 16 LS Contribution 395.70 15.07 5.96 5.96 Total: -1.00 -29.07 395.70 -9.11 -38.18 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -8.08 Total: 9.02 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -2.69 Total: -6.73 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.42 Total: -53.39 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.29 Total: -8.89 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.07 -9.11 -38.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021255067.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.425 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds