Wall clock time and date at job start Wed Apr 1 2020 05:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47315 * 2 1 4 4 C 1.50699 * 109.47300 * 179.97438 * 3 2 1 5 5 O 1.33490 * 126.83232 * 270.10917 * 4 3 2 6 6 N 1.20655 * 113.15519 * 180.29715 * 5 4 3 7 7 C 1.30010 * 112.30554 * 359.75884 * 6 5 4 8 8 C 1.50701 * 127.33677 * 179.97438 * 7 6 5 9 9 C 1.37362 * 126.82586 * 90.00030 * 4 3 2 10 10 C 1.47399 * 128.56433 * 0.02562 * 9 4 3 11 11 O 1.21616 * 119.99756 * 269.69591 * 10 9 4 12 12 N 1.34777 * 120.00243 * 89.69977 * 10 9 4 13 13 C 1.46502 * 120.00140 * 179.97438 * 12 10 9 14 14 C 1.53147 * 109.43219 * 120.18107 * 13 12 10 15 15 C 1.53708 * 108.87683 * 66.13361 * 14 13 12 16 16 H 1.08999 * 112.09722 * 188.24905 * 15 14 13 17 17 C 1.54604 * 107.83057 * 312.22327 * 15 14 13 18 18 C 1.54313 * 104.84952 * 88.61136 * 17 15 14 19 19 C 1.54868 * 104.62668 * 0.08454 * 18 17 15 20 20 H 1.08997 * 112.70280 * 147.03143 * 19 18 17 21 21 C 1.53140 * 109.39834 * 240.38409 * 13 12 10 22 22 N 1.48287 * 107.27594 * 64.00571 * 15 14 13 23 23 C 1.36941 * 128.21535 * 107.41514 * 22 15 14 24 24 H 1.07995 * 120.00416 * 162.63824 * 23 22 15 25 25 C 1.38819 * 119.99528 * 342.64150 * 23 22 15 26 26 N 1.31615 * 119.99844 * 2.56794 * 25 23 22 27 27 Si 1.86802 * 119.99709 * 182.56854 * 25 23 22 28 28 H 1.48498 * 109.46822 * 60.00142 * 27 25 23 29 29 H 1.48497 * 109.46622 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47108 * 300.00031 * 27 25 23 31 31 H 1.08997 * 109.47514 * 59.99836 * 1 2 3 32 32 H 1.09003 * 109.47466 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46995 * 299.99569 * 1 2 3 34 34 H 1.09000 * 109.46424 * 240.00018 * 2 1 3 35 35 H 1.09000 * 109.46897 * 120.00855 * 2 1 3 36 36 H 1.09001 * 109.47163 * 60.00075 * 3 2 1 37 37 H 1.09005 * 109.47149 * 300.00258 * 3 2 1 38 38 H 1.08996 * 109.47501 * 269.99746 * 8 7 6 39 39 H 1.08994 * 109.47253 * 30.00292 * 8 7 6 40 40 H 1.09009 * 109.46751 * 149.99754 * 8 7 6 41 41 H 0.96998 * 119.99876 * 359.97438 * 12 10 9 42 42 H 1.08998 * 109.43567 * 0.27653 * 13 12 10 43 43 H 1.09001 * 109.57460 * 306.31699 * 14 13 12 44 44 H 1.09001 * 109.57079 * 185.94752 * 14 13 12 45 45 H 1.09007 * 110.38227 * 207.47701 * 17 15 14 46 46 H 1.09001 * 110.38891 * 329.73616 * 17 15 14 47 47 H 1.08997 * 110.38653 * 118.87179 * 18 17 15 48 48 H 1.09000 * 110.37990 * 241.23905 * 18 17 15 49 49 H 1.08997 * 109.57419 * 53.66896 * 21 13 12 50 50 H 1.09002 * 109.57022 * 173.90678 * 21 13 12 51 51 H 0.97008 * 119.99509 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.3468 1.4405 1.0694 6 7 5.5193 1.4468 0.7846 7 6 5.7149 1.4488 -0.5007 8 6 7.0369 1.4567 -1.2240 9 6 4.3708 1.4423 -1.0985 10 6 3.9996 1.4426 -2.5250 11 8 3.8515 0.3895 -3.1150 12 7 3.8244 2.6099 -3.1756 13 6 3.4560 2.6102 -4.5935 14 6 2.1160 3.3299 -4.7716 15 6 2.2976 4.8142 -4.4161 16 1 1.3476 5.3477 -4.3853 17 6 3.0536 4.8894 -3.0696 18 6 4.5479 4.8885 -3.4544 19 6 4.5534 4.8148 -5.0013 20 1 5.3920 5.3513 -5.4450 21 6 4.5400 3.3305 -5.4005 22 7 3.2459 5.3899 -5.4001 23 6 2.9780 6.2489 -6.4324 24 1 3.7803 6.8052 -6.8941 25 6 1.6750 6.4046 -6.8853 26 7 0.6906 5.7653 -6.2899 27 14 1.3190 7.5214 -8.3398 28 1 2.0572 7.0320 -9.5318 29 1 -0.1385 7.5149 -8.6236 30 1 1.7556 8.9043 -8.0205 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8932 -0.5139 -0.8900 35 1 1.8933 -0.5140 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 7.3500 2.4862 -1.3977 39 1 7.7857 0.9466 -0.6180 40 1 6.9313 0.9428 -2.1795 41 1 3.9422 3.4498 -2.7049 42 1 3.3651 1.5824 -4.9448 43 1 1.3718 2.8848 -4.1113 44 1 1.7882 3.2401 -5.8073 45 1 2.7982 5.8083 -2.5416 46 1 2.8196 4.0210 -2.4537 47 1 5.0278 5.8067 -3.1158 48 1 5.0487 4.0185 -3.0296 49 1 5.5116 2.8858 -5.1854 50 1 4.3243 3.2388 -6.4650 51 1 -0.2199 5.8745 -6.6062 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021255067.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:17 Heat of formation + Delta-G solvation = 95.422640 kcal Electronic energy + Delta-G solvation = -33018.615303 eV Core-core repulsion = 28923.906359 eV Total energy + Delta-G solvation = -4094.708944 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.93173 -42.55279 -39.77194 -36.61561 -35.86234 -35.59172 -33.93973 -33.09476 -32.46801 -31.90371 -30.77964 -29.74381 -28.15828 -26.66819 -25.44889 -24.86102 -23.11764 -22.84288 -21.88135 -21.24871 -21.15947 -20.63663 -19.36910 -18.81385 -18.47120 -17.65721 -16.82864 -16.57087 -16.32956 -16.00800 -15.68809 -15.33817 -14.98769 -14.69277 -14.57414 -14.46979 -14.42727 -14.24086 -14.16635 -13.80962 -13.71919 -13.69020 -13.31767 -13.24475 -13.18035 -12.76131 -12.68340 -12.55298 -12.40913 -12.25379 -12.20900 -12.07579 -11.97099 -11.73964 -11.61869 -11.52233 -11.19246 -11.10874 -11.03060 -10.93286 -10.55203 -10.43100 -9.72558 -8.70799 -7.78396 -5.17546 0.24764 0.84249 1.33597 1.50262 1.51743 1.57166 1.75979 2.34227 2.52824 3.11022 3.20335 3.37248 3.55687 3.72221 3.84125 3.92539 3.95867 4.00216 4.08798 4.14183 4.15260 4.26314 4.29233 4.40810 4.46133 4.48894 4.59918 4.62993 4.66778 4.67287 4.71949 4.78530 4.79975 4.88758 4.96119 5.00602 5.02993 5.08988 5.10618 5.17785 5.24735 5.25278 5.28962 5.41011 5.41536 5.55920 5.59545 5.78758 5.86645 6.33922 6.47932 7.11834 7.14326 7.15775 7.79334 8.59027 9.29384 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.003427 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.936529 B = 8169.174792 C = 9124.423651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.047 4.047 4 C 0.035 3.965 5 O 0.095 5.905 6 N -0.372 5.372 7 C 0.053 3.947 8 C -0.081 4.081 9 C -0.270 4.270 10 C 0.590 3.410 11 O -0.574 6.574 12 N -0.711 5.711 13 C 0.153 3.847 14 C -0.113 4.113 15 C 0.173 3.827 16 H 0.084 0.916 17 C -0.164 4.164 18 C -0.151 4.151 19 C 0.143 3.857 20 H 0.074 0.926 21 C -0.130 4.130 22 N -0.603 5.603 23 C -0.233 4.233 24 H 0.075 0.925 25 C -0.051 4.051 26 N -0.933 5.933 27 Si 0.966 3.034 28 H -0.283 1.283 29 H -0.298 1.298 30 H -0.281 1.281 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.435 0.565 42 H 0.075 0.925 43 H 0.049 0.951 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.093 0.907 47 H 0.075 0.925 48 H 0.100 0.900 49 H 0.075 0.925 50 H 0.054 0.946 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.077 -7.776 14.704 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.085 4.085 4 C -0.029 4.029 5 O 0.036 5.964 6 N -0.080 5.080 7 C -0.110 4.110 8 C -0.138 4.138 9 C -0.278 4.278 10 C 0.375 3.625 11 O -0.454 6.454 12 N -0.384 5.384 13 C 0.049 3.951 14 C -0.153 4.153 15 C 0.066 3.934 16 H 0.101 0.899 17 C -0.204 4.204 18 C -0.190 4.190 19 C 0.037 3.963 20 H 0.092 0.908 21 C -0.170 4.170 22 N -0.325 5.325 23 C -0.363 4.363 24 H 0.093 0.907 25 C -0.245 4.245 26 N -0.581 5.581 27 Si 0.795 3.205 28 H -0.210 1.210 29 H -0.224 1.224 30 H -0.207 1.207 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.143 0.857 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.297 0.703 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.083 0.917 46 H 0.111 0.889 47 H 0.094 0.906 48 H 0.118 0.882 49 H 0.094 0.906 50 H 0.073 0.927 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.586 -8.293 15.217 18.539 hybrid contribution -0.788 0.736 -1.867 2.155 sum 5.798 -7.558 13.350 16.400 Atomic orbital electron populations 1.21746 0.93441 1.02703 1.02754 1.21495 0.97553 0.94107 1.02443 1.20578 0.81257 1.00102 1.06592 1.25033 0.96506 0.96869 0.84507 1.84501 1.11023 1.67936 1.32954 1.73586 0.96323 1.21281 1.16822 1.25165 0.96790 1.00075 0.88930 1.20388 0.88722 1.05202 0.99510 1.21942 0.93958 1.17122 0.94736 1.17297 0.76178 0.84473 0.84507 1.90761 1.52869 1.33203 1.68564 1.48985 1.67643 1.09659 1.12065 1.20859 0.94714 0.99392 0.80173 1.22186 0.94732 0.98006 1.00418 1.21516 0.94721 0.91231 0.85902 0.89855 1.23331 0.96020 1.01778 0.99251 1.23238 0.96055 1.02635 0.97066 1.21801 0.89389 0.91763 0.93397 0.90806 1.22404 0.97927 0.97527 0.99179 1.45294 1.03595 1.51621 1.31985 1.19224 0.93294 1.15729 1.08010 0.90721 1.25510 0.96153 1.01723 1.01124 1.69950 0.98904 1.46700 1.42534 0.85354 0.76115 0.78797 0.80195 1.20989 1.22394 1.20691 0.92984 0.91817 0.90623 0.93484 0.90443 0.85678 0.88573 0.87735 0.88631 0.89985 0.70300 0.90732 0.93199 0.93750 0.91745 0.88922 0.90618 0.88213 0.90648 0.92741 0.94447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 71.98 0.71 -1.48 16 2 C -0.12 -2.07 5.92 30.59 0.18 -1.89 16 3 C -0.05 -0.82 5.66 29.85 0.17 -0.65 16 4 C 0.03 0.78 6.80 25.48 0.17 0.95 16 5 O 0.10 2.22 11.06 77.02 0.85 3.07 16 6 N -0.37 -9.32 12.01 -44.78 -0.54 -9.86 16 7 C 0.05 1.27 7.59 45.16 0.34 1.61 16 8 C -0.08 -1.45 10.49 71.24 0.75 -0.70 16 9 C -0.27 -7.08 6.24 -18.74 -0.12 -7.19 16 10 C 0.59 18.03 7.60 86.66 0.66 18.69 16 11 O -0.57 -21.71 16.43 -4.08 -0.07 -21.78 16 12 N -0.71 -20.81 2.77 -445.36 -1.23 -22.04 16 13 C 0.15 5.33 3.15 45.09 0.14 5.47 16 14 C -0.11 -4.58 5.49 30.88 0.17 -4.42 16 15 C 0.17 7.38 3.18 45.43 0.14 7.52 16 16 H 0.08 4.24 6.09 -2.39 -0.01 4.23 16 17 C -0.16 -5.31 5.75 31.59 0.18 -5.13 16 18 C -0.15 -4.39 5.77 31.68 0.18 -4.21 16 19 C 0.14 5.17 4.33 45.52 0.20 5.36 16 20 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 21 C -0.13 -4.45 5.49 30.88 0.17 -4.28 16 22 N -0.60 -27.62 2.83 -636.72 -1.80 -29.42 16 23 C -0.23 -12.11 10.39 84.03 0.87 -11.24 16 24 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16 25 C -0.05 -2.69 5.49 84.86 0.47 -2.22 16 26 N -0.93 -51.69 10.55 21.65 0.23 -51.47 16 27 Si 0.97 43.72 29.55 68.60 2.03 45.74 16 28 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 29 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 30 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 36 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.10 1.81 8.11 -2.38 -0.02 1.79 16 38 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.43 11.64 1.87 -116.95 -0.22 11.42 16 42 H 0.07 2.80 6.89 -2.39 -0.02 2.78 16 43 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 46 H 0.09 2.63 5.27 -2.39 -0.01 2.61 16 47 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.10 2.49 5.26 -2.39 -0.01 2.48 16 49 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 50 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 51 H 0.25 13.52 8.31 -92.70 -0.77 12.75 16 Total: -1.00 -64.42 395.70 5.59 -58.84 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.72 Total: 30.70 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 5.39 Total: -3.80 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -3.34 Total: -112.78 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.78 Total: -18.70 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -64.42 5.59 -58.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021255067.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.258 kcal (2) G-P(sol) polarization free energy of solvation -64.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds