Wall clock time and date at job start Wed Apr 1 2020 05:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47484 * 2 1 4 4 C 1.50700 * 109.46565 * 119.99767 * 2 1 3 5 5 C 1.35318 * 126.66629 * 120.28641 * 4 2 1 6 6 C 1.42272 * 103.92418 * 180.08831 * 5 4 2 7 7 C 1.48335 * 126.93636 * 179.90960 * 6 5 4 8 8 O 1.21494 * 120.00337 * 6.70857 * 7 6 5 9 9 N 1.34777 * 119.99456 * 186.70886 * 7 6 5 10 10 C 1.47019 * 120.81761 * 6.28774 * 9 7 6 11 11 C 1.53145 * 109.11669 * 125.99910 * 10 9 7 12 12 C 1.53119 * 109.48124 * 53.94465 * 11 10 9 13 13 C 1.52858 * 109.34299 * 299.35310 * 12 11 10 14 14 H 1.08999 * 108.59920 * 302.88144 * 13 12 11 15 15 C 1.52768 * 110.20397 * 183.23548 * 13 12 11 16 16 N 1.46891 * 109.24018 * 292.69688 * 15 13 12 17 17 C 1.36939 * 120.77475 * 126.59910 * 16 15 13 18 18 H 1.07994 * 119.99540 * 207.54001 * 17 16 15 19 19 C 1.38805 * 119.99937 * 27.54609 * 17 16 15 20 20 N 1.31624 * 120.00180 * 17.08923 * 19 17 16 21 21 Si 1.86800 * 120.00022 * 197.09276 * 19 17 16 22 22 H 1.48502 * 109.46960 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47309 * 119.99446 * 21 19 17 24 24 H 1.48499 * 109.47299 * 239.99880 * 21 19 17 25 25 C 1.46981 * 118.44632 * 306.62210 * 16 15 13 26 26 C 1.53085 * 108.62231 * 54.31379 * 25 16 15 27 27 C 1.47315 * 120.84138 * 186.11923 * 9 7 6 28 28 H 1.09001 * 110.07433 * 355.81057 * 27 9 7 29 29 N 1.30981 * 106.12157 * 359.64971 * 6 5 4 30 30 O 1.20901 * 111.44212 * 0.22577 * 29 6 5 31 31 H 1.08993 * 109.47501 * 300.00473 * 1 2 3 32 32 H 1.09009 * 109.46352 * 60.00270 * 1 2 3 33 33 H 1.08999 * 109.47545 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47501 * 239.99527 * 2 1 3 35 35 H 1.08997 * 109.47120 * 299.99978 * 3 2 1 36 36 H 1.09007 * 109.47189 * 59.99450 * 3 2 1 37 37 H 1.08994 * 109.47351 * 179.97438 * 3 2 1 38 38 H 1.08005 * 128.04144 * 359.96364 * 5 4 2 39 39 H 1.09001 * 109.60224 * 6.04941 * 10 9 7 40 40 H 1.09001 * 109.40141 * 245.82872 * 10 9 7 41 41 H 1.09006 * 109.46514 * 293.94528 * 11 10 9 42 42 H 1.08998 * 109.46657 * 173.95078 * 11 10 9 43 43 H 1.08992 * 109.49351 * 179.39032 * 12 11 10 44 44 H 1.09003 * 109.51202 * 59.32253 * 12 11 10 45 45 H 1.09003 * 109.51632 * 172.74879 * 15 13 12 46 46 H 1.08996 * 109.51717 * 52.64474 * 15 13 12 47 47 H 0.97008 * 120.00145 * 180.02562 * 20 19 17 48 48 H 1.08997 * 109.60555 * 174.05372 * 25 16 15 49 49 H 1.08998 * 109.61317 * 294.39276 * 25 16 15 50 50 H 1.08996 * 109.45606 * 64.69561 * 26 25 16 51 51 H 1.08999 * 109.45253 * 184.62721 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 2.8176 -1.8118 1.2638 6 6 2.9916 -2.0665 2.6526 7 6 3.7721 -3.1688 3.2659 8 8 4.4454 -3.8988 2.5661 9 7 3.7343 -3.3604 4.5994 10 6 2.8223 -2.5786 5.4471 11 6 1.9691 -3.5371 6.2830 12 6 2.8826 -4.4977 7.0495 13 6 3.7128 -5.3089 6.0548 14 1 3.0343 -5.8319 5.3808 15 6 4.5737 -6.3305 6.7957 16 7 5.5920 -5.6242 7.5845 17 6 5.7341 -5.8683 8.9244 18 1 6.1230 -5.0990 9.5750 19 6 5.3785 -7.1043 9.4463 20 7 5.2292 -8.1384 8.6457 21 14 5.1116 -7.3002 11.2847 22 1 5.3403 -5.9974 11.9596 23 1 3.7197 -7.7516 11.5376 24 1 6.0633 -8.3075 11.8185 25 6 6.4543 -4.6491 6.9019 26 6 5.5663 -3.6299 6.1835 27 6 4.6028 -4.3608 5.2436 28 1 5.1632 -4.9117 4.4882 29 7 2.3280 -1.1277 3.2804 30 8 1.7925 -0.3708 2.5046 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4424 0.0005 38 1 3.2176 -2.3694 0.4298 39 1 2.1743 -1.9665 4.8197 40 1 3.4038 -1.9366 6.1087 41 1 1.3128 -4.1070 5.6253 42 1 1.3678 -2.9656 6.9901 43 1 2.2761 -5.1729 7.6528 44 1 3.5476 -3.9278 7.6985 45 1 5.0617 -6.9866 6.0749 46 1 3.9449 -6.9232 7.4600 47 1 4.9803 -9.0022 9.0104 48 1 7.0793 -4.1380 7.6341 49 1 7.0857 -5.1632 6.1773 50 1 4.9958 -3.0631 6.9192 51 1 6.1904 -2.9485 5.6053 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021642235.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:16 Heat of formation + Delta-G solvation = 50.305249 kcal Electronic energy + Delta-G solvation = -31989.635761 eV Core-core repulsion = 27892.970380 eV Total energy + Delta-G solvation = -4096.665381 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.28609 -40.31330 -38.08569 -36.52786 -35.58289 -34.16357 -32.63689 -32.47936 -31.01318 -30.20433 -29.42807 -27.67197 -25.88636 -25.58096 -24.12376 -23.51056 -22.61276 -22.14255 -21.71572 -21.07066 -18.90677 -17.97551 -17.91052 -17.45986 -16.94512 -16.62568 -15.74311 -15.44318 -15.08847 -14.96858 -14.66501 -14.34026 -13.99764 -13.82769 -13.73464 -13.57428 -13.51431 -13.03258 -12.79810 -12.69241 -12.62694 -12.42654 -12.20501 -12.02870 -11.80010 -11.77938 -11.55515 -11.38337 -11.08140 -10.80754 -10.72233 -10.64954 -10.54789 -10.40432 -10.19171 -10.05277 -9.99872 -9.89423 -9.68164 -9.61833 -9.40519 -8.50946 -8.29954 -6.68157 -5.79150 -3.21007 0.95449 1.49430 2.63309 2.93659 3.16581 3.36583 3.44884 3.46589 3.80871 4.03726 4.38760 4.49046 4.54317 4.65150 4.78870 4.90836 5.11317 5.13944 5.15460 5.23967 5.28174 5.32158 5.36899 5.41139 5.44907 5.47053 5.49534 5.58160 5.64408 5.72353 5.75710 5.78976 5.87142 5.96227 6.09897 6.16076 6.23032 6.32493 6.42690 6.46975 6.52710 6.69075 6.77730 6.89040 6.94750 7.04541 7.31473 7.48992 7.65165 7.79594 7.82631 8.16182 8.43860 9.20417 9.83706 10.41044 11.29508 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028264 B = 0.002424 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.410772 B =11549.527274 C =11836.851705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.012 4.012 3 C -0.151 4.151 4 C -0.027 4.027 5 C -0.182 4.182 6 C -0.013 4.013 7 C 0.591 3.409 8 O -0.530 6.530 9 N -0.587 5.587 10 C 0.088 3.912 11 C -0.133 4.133 12 C -0.105 4.105 13 C -0.114 4.114 14 H 0.057 0.943 15 C 0.178 3.822 16 N -0.588 5.588 17 C -0.248 4.248 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.148 3.852 26 C -0.141 4.141 27 C 0.155 3.845 28 H 0.096 0.904 29 N -0.328 5.328 30 O 0.114 5.886 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.179 0.821 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.020 0.980 46 H 0.093 0.907 47 H 0.253 0.747 48 H 0.058 0.942 49 H 0.021 0.979 50 H 0.066 0.934 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.274 17.967 -16.758 26.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 C -0.209 4.209 4 C -0.090 4.090 5 C -0.205 4.205 6 C -0.171 4.171 7 C 0.376 3.624 8 O -0.405 6.405 9 N -0.318 5.318 10 C -0.035 4.035 11 C -0.171 4.171 12 C -0.142 4.142 13 C -0.135 4.135 14 H 0.075 0.925 15 C 0.051 3.949 16 N -0.311 5.311 17 C -0.378 4.378 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.020 3.980 26 C -0.181 4.181 27 C 0.054 3.946 28 H 0.114 0.886 29 N -0.033 5.033 30 O 0.042 5.958 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.123 0.877 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.197 0.803 39 H 0.126 0.874 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.038 0.962 46 H 0.112 0.888 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.039 0.961 50 H 0.085 0.915 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.101 17.644 -15.744 25.714 hybrid contribution 0.050 -0.573 0.283 0.642 sum -10.051 17.071 -15.460 25.128 Atomic orbital electron populations 1.21901 0.93002 1.02877 1.03097 1.19819 0.96829 0.96166 0.90283 1.21901 1.01767 0.94112 1.03093 1.24459 1.00085 0.97213 0.87228 1.22443 1.02640 0.98758 0.96636 1.23644 1.02385 0.98327 0.92790 1.17007 0.80977 0.82232 0.82229 1.90782 1.42514 1.45959 1.61266 1.48464 1.39369 1.38802 1.05203 1.22325 0.92571 0.93933 0.94627 1.21963 0.98146 0.98185 0.98836 1.21465 0.97503 0.97675 0.97577 1.22046 0.97409 0.97196 0.96833 0.92499 1.20711 0.90080 0.90608 0.93480 1.44044 1.35158 1.45932 1.05964 1.19182 1.40060 0.95693 0.82826 0.91628 1.25023 1.02041 0.94978 0.97583 1.70039 1.51371 0.99557 1.33684 0.86260 0.77552 0.77637 0.85558 1.20286 1.21601 1.21785 1.20855 0.91801 0.90490 0.94815 1.22419 0.98206 0.99159 0.98294 1.21517 0.90535 0.88279 0.94313 0.88565 1.74096 1.10110 1.03102 1.15971 1.84770 1.54597 1.42838 1.13548 0.91657 0.91199 0.91973 0.87725 0.91191 0.91667 0.91976 0.80340 0.87428 0.91317 0.92389 0.91178 0.91970 0.90502 0.96166 0.88845 0.93675 0.92396 0.96137 0.91498 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.18 37.16 0.34 -0.35 16 2 C -0.01 -0.06 3.34 -91.77 -0.31 -0.37 16 3 C -0.15 -0.69 9.18 37.16 0.34 -0.35 16 4 C -0.03 -0.24 5.98 -35.35 -0.21 -0.45 16 5 C -0.18 -2.02 10.91 -39.07 -0.43 -2.45 16 6 C -0.01 -0.18 6.88 -82.53 -0.57 -0.75 16 7 C 0.59 10.11 7.72 -12.10 -0.09 10.02 16 8 O -0.53 -10.44 16.42 5.37 0.09 -10.35 16 9 N -0.59 -9.83 2.66 -165.66 -0.44 -10.27 16 10 C 0.09 1.29 5.66 -3.68 -0.02 1.27 16 11 C -0.13 -1.94 6.08 -26.59 -0.16 -2.11 16 12 C -0.10 -1.86 4.86 -26.74 -0.13 -1.99 16 13 C -0.11 -2.22 2.46 -90.67 -0.22 -2.44 16 14 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 15 C 0.18 4.20 4.70 -3.95 -0.02 4.18 16 16 N -0.59 -14.39 2.64 -172.63 -0.46 -14.85 16 17 C -0.25 -6.64 9.60 -15.06 -0.14 -6.78 16 18 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 19 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 20 N -0.90 -25.93 11.17 55.49 0.62 -25.31 16 21 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.15 3.11 6.51 -3.74 -0.02 3.08 16 26 C -0.14 -2.56 5.02 -26.60 -0.13 -2.70 16 27 C 0.15 2.88 2.66 -67.26 -0.18 2.70 16 28 H 0.10 1.97 7.06 -51.93 -0.37 1.60 16 29 N -0.33 -4.27 8.66 33.29 0.29 -3.98 16 30 O 0.11 1.22 11.18 17.24 0.19 1.41 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.21 8.14 -51.92 -0.42 -0.21 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.10 0.41 8.12 -51.93 -0.42 -0.01 16 35 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.18 1.70 8.06 -52.48 -0.42 1.28 16 39 H 0.11 1.50 4.19 -56.87 -0.24 1.26 16 40 H 0.07 0.99 7.26 -51.93 -0.38 0.62 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.08 1.48 6.15 -51.93 -0.32 1.16 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.09 2.46 6.03 -51.93 -0.31 2.15 16 47 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.06 1.18 7.94 -51.93 -0.41 0.77 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.07 1.21 5.33 -51.93 -0.28 0.94 16 51 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -30.86 391.47 -9.08 -39.94 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -8.19 Total: 0.56 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -2.05 Total: 0.50 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.01 Total: -54.41 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.28 Total: -8.94 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.86 -9.08 -39.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021642235.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.241 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds