Wall clock time and date at job start Wed Apr 1 2020 05:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47484 * 2 1 4 4 C 1.50700 * 109.46565 * 119.99767 * 2 1 3 5 5 C 1.35318 * 126.66629 * 120.28641 * 4 2 1 6 6 C 1.42272 * 103.92418 * 180.08831 * 5 4 2 7 7 C 1.48335 * 126.93636 * 179.90960 * 6 5 4 8 8 O 1.21494 * 120.00337 * 6.70857 * 7 6 5 9 9 N 1.34777 * 119.99456 * 186.70886 * 7 6 5 10 10 C 1.47019 * 120.81761 * 6.28774 * 9 7 6 11 11 C 1.53145 * 109.11669 * 125.99910 * 10 9 7 12 12 C 1.53119 * 109.48124 * 53.94465 * 11 10 9 13 13 C 1.52858 * 109.34299 * 299.35310 * 12 11 10 14 14 H 1.08999 * 108.59920 * 302.88144 * 13 12 11 15 15 C 1.52768 * 110.20397 * 183.23548 * 13 12 11 16 16 N 1.46891 * 109.24018 * 292.69688 * 15 13 12 17 17 C 1.36939 * 120.77475 * 126.59910 * 16 15 13 18 18 H 1.07994 * 119.99540 * 207.54001 * 17 16 15 19 19 C 1.38805 * 119.99937 * 27.54609 * 17 16 15 20 20 N 1.31624 * 120.00180 * 17.08923 * 19 17 16 21 21 Si 1.86800 * 120.00022 * 197.09276 * 19 17 16 22 22 H 1.48502 * 109.46960 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47309 * 119.99446 * 21 19 17 24 24 H 1.48499 * 109.47299 * 239.99880 * 21 19 17 25 25 C 1.46981 * 118.44632 * 306.62210 * 16 15 13 26 26 C 1.53085 * 108.62231 * 54.31379 * 25 16 15 27 27 C 1.47315 * 120.84138 * 186.11923 * 9 7 6 28 28 H 1.09001 * 110.07433 * 355.81057 * 27 9 7 29 29 N 1.30981 * 106.12157 * 359.64971 * 6 5 4 30 30 O 1.20901 * 111.44212 * 0.22577 * 29 6 5 31 31 H 1.08993 * 109.47501 * 300.00473 * 1 2 3 32 32 H 1.09009 * 109.46352 * 60.00270 * 1 2 3 33 33 H 1.08999 * 109.47545 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47501 * 239.99527 * 2 1 3 35 35 H 1.08997 * 109.47120 * 299.99978 * 3 2 1 36 36 H 1.09007 * 109.47189 * 59.99450 * 3 2 1 37 37 H 1.08994 * 109.47351 * 179.97438 * 3 2 1 38 38 H 1.08005 * 128.04144 * 359.96364 * 5 4 2 39 39 H 1.09001 * 109.60224 * 6.04941 * 10 9 7 40 40 H 1.09001 * 109.40141 * 245.82872 * 10 9 7 41 41 H 1.09006 * 109.46514 * 293.94528 * 11 10 9 42 42 H 1.08998 * 109.46657 * 173.95078 * 11 10 9 43 43 H 1.08992 * 109.49351 * 179.39032 * 12 11 10 44 44 H 1.09003 * 109.51202 * 59.32253 * 12 11 10 45 45 H 1.09003 * 109.51632 * 172.74879 * 15 13 12 46 46 H 1.08996 * 109.51717 * 52.64474 * 15 13 12 47 47 H 0.97008 * 120.00145 * 180.02562 * 20 19 17 48 48 H 1.08997 * 109.60555 * 174.05372 * 25 16 15 49 49 H 1.08998 * 109.61317 * 294.39276 * 25 16 15 50 50 H 1.08996 * 109.45606 * 64.69561 * 26 25 16 51 51 H 1.08999 * 109.45253 * 184.62721 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 2.8176 -1.8118 1.2638 6 6 2.9916 -2.0665 2.6526 7 6 3.7721 -3.1688 3.2659 8 8 4.4454 -3.8988 2.5661 9 7 3.7343 -3.3604 4.5994 10 6 2.8223 -2.5786 5.4471 11 6 1.9691 -3.5371 6.2830 12 6 2.8826 -4.4977 7.0495 13 6 3.7128 -5.3089 6.0548 14 1 3.0343 -5.8319 5.3808 15 6 4.5737 -6.3305 6.7957 16 7 5.5920 -5.6242 7.5845 17 6 5.7341 -5.8683 8.9244 18 1 6.1230 -5.0990 9.5750 19 6 5.3785 -7.1043 9.4463 20 7 5.2292 -8.1384 8.6457 21 14 5.1116 -7.3002 11.2847 22 1 5.3403 -5.9974 11.9596 23 1 3.7197 -7.7516 11.5376 24 1 6.0633 -8.3075 11.8185 25 6 6.4543 -4.6491 6.9019 26 6 5.5663 -3.6299 6.1835 27 6 4.6028 -4.3608 5.2436 28 1 5.1632 -4.9117 4.4882 29 7 2.3280 -1.1277 3.2804 30 8 1.7925 -0.3708 2.5046 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4424 0.0005 38 1 3.2176 -2.3694 0.4298 39 1 2.1743 -1.9665 4.8197 40 1 3.4038 -1.9366 6.1087 41 1 1.3128 -4.1070 5.6253 42 1 1.3678 -2.9656 6.9901 43 1 2.2761 -5.1729 7.6528 44 1 3.5476 -3.9278 7.6985 45 1 5.0617 -6.9866 6.0749 46 1 3.9449 -6.9232 7.4600 47 1 4.9803 -9.0022 9.0104 48 1 7.0793 -4.1380 7.6341 49 1 7.0857 -5.1632 6.1773 50 1 4.9958 -3.0631 6.9192 51 1 6.1904 -2.9485 5.6053 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021642235.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:15 Heat of formation + Delta-G solvation = 34.356416 kcal Electronic energy + Delta-G solvation = -31990.327354 eV Core-core repulsion = 27892.970380 eV Total energy + Delta-G solvation = -4097.356974 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -46.21797 -41.74416 -39.60576 -37.27199 -36.96631 -35.26899 -34.24395 -34.05058 -32.10484 -31.63195 -31.13868 -27.99187 -27.49686 -27.09080 -25.51107 -24.30643 -23.99324 -23.58983 -23.05322 -22.45682 -20.14215 -19.48110 -18.91296 -18.61953 -18.41199 -17.81072 -17.16355 -16.90333 -16.40996 -16.05539 -16.01054 -15.64575 -15.28217 -15.14780 -15.11376 -14.67090 -14.53657 -14.26272 -14.18555 -14.09819 -13.91489 -13.68152 -13.26496 -13.05023 -12.98664 -12.93603 -12.63151 -12.50243 -12.38805 -12.15267 -12.11939 -12.01751 -11.89938 -11.84864 -11.74312 -11.62375 -11.50328 -11.45074 -11.28036 -11.01319 -10.54923 -10.46974 -9.74909 -8.71322 -7.87537 -5.32571 -0.03841 0.62076 1.45883 1.48456 1.57052 1.58634 1.92876 1.96723 2.50893 2.72786 3.27017 3.28464 3.56813 3.65306 3.80450 3.86254 3.88693 3.94301 4.00116 4.04156 4.13836 4.17246 4.30530 4.33510 4.39064 4.49230 4.54171 4.65619 4.69052 4.82652 4.83864 4.86153 4.86475 4.92664 4.97778 5.00939 5.01015 5.02426 5.04883 5.14987 5.17862 5.25596 5.37064 5.41202 5.42817 5.47058 5.55753 5.62555 5.67998 6.18258 6.37687 6.73820 7.01418 7.13063 7.82609 8.36792 9.19821 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028264 B = 0.002424 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.410772 B =11549.527274 C =11836.851705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.010 4.010 3 C -0.151 4.151 4 C -0.003 4.003 5 C -0.194 4.194 6 C -0.038 4.038 7 C 0.588 3.412 8 O -0.565 6.565 9 N -0.588 5.588 10 C 0.089 3.911 11 C -0.123 4.123 12 C -0.097 4.097 13 C -0.104 4.104 14 H 0.054 0.946 15 C 0.189 3.811 16 N -0.601 5.601 17 C -0.252 4.252 18 H 0.071 0.929 19 C -0.050 4.050 20 N -0.937 5.937 21 Si 0.965 3.035 22 H -0.264 1.264 23 H -0.291 1.291 24 H -0.296 1.296 25 C 0.144 3.856 26 C -0.124 4.124 27 C 0.162 3.838 28 H 0.072 0.928 29 N -0.337 5.337 30 O 0.125 5.875 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.190 0.810 39 H 0.122 0.878 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.099 0.901 43 H 0.051 0.949 44 H 0.065 0.935 45 H -0.012 1.012 46 H 0.064 0.936 47 H 0.249 0.751 48 H 0.066 0.934 49 H 0.011 0.989 50 H 0.075 0.925 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.896 21.199 -17.543 29.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 C -0.208 4.208 4 C -0.066 4.066 5 C -0.217 4.217 6 C -0.195 4.195 7 C 0.375 3.625 8 O -0.443 6.443 9 N -0.318 5.318 10 C -0.032 4.032 11 C -0.161 4.161 12 C -0.134 4.134 13 C -0.125 4.125 14 H 0.072 0.928 15 C 0.062 3.938 16 N -0.324 5.324 17 C -0.382 4.382 18 H 0.088 0.912 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.794 3.206 22 H -0.189 1.189 23 H -0.218 1.218 24 H -0.223 1.223 25 C 0.018 3.982 26 C -0.164 4.164 27 C 0.059 3.941 28 H 0.091 0.909 29 N -0.039 5.039 30 O 0.051 5.949 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.142 0.858 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.207 0.793 39 H 0.139 0.861 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.117 0.883 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.006 0.994 46 H 0.082 0.918 47 H 0.058 0.942 48 H 0.084 0.916 49 H 0.029 0.971 50 H 0.093 0.907 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.723 20.911 -16.515 29.111 hybrid contribution 0.563 -1.521 0.416 1.674 sum -11.160 19.390 -16.099 27.563 Atomic orbital electron populations 1.21918 0.92117 1.02796 1.03978 1.20093 0.97440 0.96510 0.88909 1.21918 1.01423 0.93492 1.03974 1.25079 0.98196 0.96113 0.87254 1.22643 1.03554 0.99798 0.95713 1.23337 1.03680 0.98351 0.94108 1.17382 0.80650 0.82520 0.81970 1.90754 1.44078 1.47461 1.62005 1.48426 1.39418 1.38423 1.05578 1.22485 0.92426 0.93743 0.94589 1.21905 0.97579 0.97630 0.98996 1.21354 0.97387 0.97696 0.97011 1.21824 0.96986 0.96720 0.96954 0.92776 1.20429 0.89868 0.91178 0.92291 1.44236 1.36042 1.46388 1.05747 1.19498 1.39129 0.95656 0.83944 0.91175 1.25770 1.02478 0.94766 1.01543 1.70201 1.52871 0.99843 1.35416 0.85239 0.76878 0.77744 0.80788 1.18854 1.21755 1.22296 1.20972 0.92014 0.90364 0.94824 1.22215 0.97785 0.98277 0.98123 1.21184 0.90605 0.88601 0.93680 0.90942 1.74012 1.10176 1.03031 1.16680 1.84740 1.53728 1.42035 1.14384 0.92062 0.89129 0.92538 0.85786 0.89104 0.92089 0.92550 0.79288 0.86093 0.90554 0.92244 0.88293 0.92990 0.91599 0.99403 0.91753 0.94182 0.91582 0.97102 0.90691 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.18 71.98 0.66 -0.23 16 2 C -0.01 -0.08 3.34 -11.54 -0.04 -0.11 16 3 C -0.15 -0.89 9.18 71.98 0.66 -0.23 16 4 C 0.00 -0.05 5.98 25.01 0.15 0.10 16 5 C -0.19 -3.99 10.91 22.60 0.25 -3.75 16 6 C -0.04 -1.02 6.88 42.96 0.30 -0.73 16 7 C 0.59 20.04 7.72 86.93 0.67 20.71 16 8 O -0.56 -22.74 16.42 -3.70 -0.06 -22.80 16 9 N -0.59 -19.36 2.66 -796.33 -2.12 -21.49 16 10 C 0.09 2.44 5.66 86.33 0.49 2.93 16 11 C -0.12 -3.35 6.08 30.68 0.19 -3.16 16 12 C -0.10 -3.40 4.86 30.59 0.15 -3.26 16 13 C -0.10 -4.16 2.46 -10.83 -0.03 -4.19 16 14 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 15 C 0.19 9.39 4.70 86.23 0.41 9.80 16 16 N -0.60 -30.17 2.64 -700.09 -1.85 -32.02 16 17 C -0.25 -13.66 9.60 84.03 0.81 -12.85 16 18 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 19 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 20 N -0.94 -55.85 11.17 21.65 0.24 -55.61 16 21 Si 0.97 44.76 29.59 68.60 2.03 46.79 16 22 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 24 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 25 C 0.14 6.15 6.51 86.32 0.56 6.71 16 26 C -0.12 -4.47 5.02 30.68 0.15 -4.31 16 27 C 0.16 6.10 2.66 44.98 0.12 6.22 16 28 H 0.07 3.10 7.06 -2.39 -0.02 3.08 16 29 N -0.34 -8.09 8.66 -49.52 -0.43 -8.52 16 30 O 0.13 2.39 11.18 71.85 0.80 3.19 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.09 0.20 8.14 -2.38 -0.02 0.18 16 33 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.12 0.51 8.12 -2.39 -0.02 0.49 16 35 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 37 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.19 3.36 8.06 -2.91 -0.02 3.34 16 39 H 0.12 3.08 4.19 -12.14 -0.05 3.03 16 40 H 0.08 2.00 7.26 -2.39 -0.02 1.99 16 41 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.07 2.47 6.15 -2.39 -0.01 2.46 16 45 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 46 H 0.06 3.57 6.03 -2.39 -0.01 3.56 16 47 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 48 H 0.07 2.68 7.94 -2.39 -0.02 2.66 16 49 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.07 2.60 5.33 -2.39 -0.01 2.59 16 51 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -69.09 391.47 5.41 -63.68 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.89 Total: 15.51 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 5.91 Total: 11.26 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -4.16 Total: -117.63 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.74 Total: -19.61 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -69.09 5.41 -63.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021642235.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.034 kcal (2) G-P(sol) polarization free energy of solvation -69.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds