Wall clock time and date at job start Wed Apr 1 2020 05:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46935 * 2 1 4 4 C 1.50702 * 109.47349 * 120.00400 * 2 1 3 5 5 C 1.35316 * 126.66670 * 120.30254 * 4 2 1 6 6 C 1.42268 * 103.91961 * 180.12789 * 5 4 2 7 7 C 1.48329 * 126.94066 * 179.85631 * 6 5 4 8 8 O 1.21501 * 119.99817 * 6.51760 * 7 6 5 9 9 N 1.34776 * 120.00618 * 186.79712 * 7 6 5 10 10 C 1.47070 * 120.83819 * 5.65566 * 9 7 6 11 11 C 1.53602 * 108.79262 * 126.52981 * 10 9 7 12 12 C 1.53140 * 109.54115 * 54.23798 * 11 10 9 13 13 C 1.52819 * 109.26201 * 299.01169 * 12 11 10 14 14 H 1.08994 * 109.47454 * 302.00860 * 13 12 11 15 15 C 1.53034 * 110.51730 * 181.59458 * 13 12 11 16 16 N 1.47068 * 108.50583 * 184.77420 * 15 13 12 17 17 C 1.36935 * 120.47307 * 233.21653 * 16 15 13 18 18 H 1.07999 * 120.00354 * 151.52507 * 17 16 15 19 19 C 1.38813 * 120.00086 * 331.52923 * 17 16 15 20 20 N 1.31621 * 119.99785 * 342.51709 * 19 17 16 21 21 Si 1.86802 * 119.99993 * 162.51482 * 19 17 16 22 22 H 1.48494 * 109.47128 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46588 * 120.00231 * 21 19 17 24 24 H 1.48502 * 109.47210 * 239.99634 * 21 19 17 25 25 C 1.46861 * 119.05539 * 53.19428 * 16 15 13 26 26 C 1.53309 * 109.10343 * 307.34494 * 25 16 15 27 27 C 1.46712 * 120.84785 * 185.93558 * 9 7 6 28 28 H 1.08997 * 109.53023 * 114.79366 * 27 9 7 29 29 N 1.30992 * 106.12442 * 359.59361 * 6 5 4 30 30 O 1.20901 * 111.43539 * 0.26311 * 29 6 5 31 31 H 1.08998 * 109.46954 * 299.99339 * 1 2 3 32 32 H 1.08997 * 109.47362 * 59.99706 * 1 2 3 33 33 H 1.08999 * 109.46927 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46463 * 240.00210 * 2 1 3 35 35 H 1.09001 * 109.47123 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.47714 * 299.99927 * 3 2 1 37 37 H 1.08994 * 109.47429 * 60.00313 * 3 2 1 38 38 H 1.08000 * 128.03794 * 359.97438 * 5 4 2 39 39 H 1.09008 * 109.54083 * 246.44852 * 10 9 7 40 40 H 1.08998 * 109.54524 * 6.70430 * 10 9 7 41 41 H 1.08998 * 109.59176 * 294.14200 * 11 10 9 42 42 H 1.09006 * 109.34531 * 174.18001 * 11 10 9 43 43 H 1.09006 * 109.50473 * 179.08336 * 12 11 10 44 44 H 1.08995 * 109.50925 * 58.95512 * 12 11 10 45 45 H 1.09000 * 109.71185 * 64.94742 * 15 13 12 46 46 H 1.09004 * 109.53242 * 304.49595 * 15 13 12 47 47 H 0.97000 * 119.99764 * 180.02562 * 20 19 17 48 48 H 1.09004 * 109.53339 * 187.45607 * 25 16 15 49 49 H 1.08998 * 109.53177 * 67.22918 * 25 16 15 50 50 H 1.09006 * 109.56230 * 294.26541 * 26 25 16 51 51 H 1.09001 * 109.65147 * 173.99535 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.8182 -1.8117 1.2634 6 6 2.9914 -2.0670 2.6523 7 6 3.7709 -3.1700 3.2654 8 8 4.4414 -3.9023 2.5652 9 7 3.7310 -3.3634 4.5987 10 6 2.8275 -2.5731 5.4484 11 6 1.9750 -3.5334 6.2913 12 6 2.8903 -4.4913 7.0592 13 6 3.7122 -5.3096 6.0640 14 1 3.0413 -5.8533 5.3990 15 6 4.6100 -6.3059 6.8010 16 7 5.4613 -6.9863 5.8135 17 6 5.5058 -8.3539 5.7598 18 1 5.7222 -8.8509 4.8257 19 6 5.2726 -9.1014 6.9060 20 7 5.3502 -8.5321 8.0901 21 14 4.8484 -10.9154 6.7677 22 1 4.8247 -11.3105 5.3365 23 1 5.8704 -11.7187 7.4858 24 1 3.5137 -11.1591 7.3713 25 6 6.2628 -6.1781 4.8854 26 6 5.3491 -5.1674 4.1825 27 6 4.5922 -4.3632 5.2398 28 1 5.3044 -3.8634 5.8964 29 7 2.3281 -1.1281 3.2803 30 8 1.7928 -0.3709 2.5045 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8899 37 1 1.6767 1.9563 0.8899 38 1 3.2184 -2.3688 0.4293 39 1 3.4138 -1.9297 6.1045 40 1 2.1786 -1.9619 4.8211 41 1 1.3160 -4.1059 5.6386 42 1 1.3761 -2.9589 6.9981 43 1 2.2854 -5.1619 7.6697 44 1 3.5602 -3.9189 7.7007 45 1 3.9948 -7.0390 7.3228 46 1 5.2339 -5.7728 7.5185 47 1 5.1876 -9.0545 8.8910 48 1 6.7264 -6.8280 4.1431 49 1 7.0361 -5.6463 5.4396 50 1 4.6378 -5.6974 3.5489 51 1 5.9496 -4.4931 3.5720 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021642249.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:20 Heat of formation + Delta-G solvation = 61.420334 kcal Electronic energy + Delta-G solvation = -31994.424388 eV Core-core repulsion = 27898.240993 eV Total energy + Delta-G solvation = -4096.183394 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.26933 -40.41598 -37.72658 -36.52209 -35.84756 -34.18906 -32.87883 -32.49717 -30.99317 -30.13347 -29.18766 -27.66660 -25.87840 -25.52168 -23.98811 -23.52634 -22.59177 -22.38240 -21.76059 -19.99371 -19.41631 -18.64098 -17.95593 -17.44742 -16.69402 -16.56591 -15.85525 -15.35261 -15.14643 -14.80153 -14.59527 -14.22284 -14.06883 -13.88606 -13.72968 -13.68192 -13.44602 -13.16144 -12.79483 -12.68896 -12.43748 -12.36128 -12.16048 -11.99186 -11.80477 -11.77325 -11.54609 -11.39243 -11.00296 -10.87571 -10.81377 -10.70962 -10.64242 -10.39472 -10.22396 -10.07355 -9.95710 -9.73427 -9.67115 -9.41553 -9.07186 -8.42388 -8.26724 -6.60211 -5.75324 -3.16791 0.96710 1.51751 2.64533 2.94718 3.20526 3.39581 3.47502 3.50670 3.82080 4.04331 4.39553 4.53364 4.55041 4.65467 4.80110 4.90545 5.07220 5.11882 5.14394 5.15437 5.22797 5.32580 5.37106 5.40015 5.43078 5.47681 5.55162 5.60614 5.67783 5.72855 5.75922 5.77093 5.85385 5.97307 6.03602 6.17872 6.28933 6.35164 6.40795 6.47046 6.58777 6.65931 6.80580 6.94706 7.00577 7.20593 7.34919 7.53312 7.65421 7.84040 7.85178 8.23102 8.49642 9.25350 9.89033 10.45769 11.33242 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021462 B = 0.002539 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.342747 B =11023.286873 C =11460.664724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.012 4.012 3 C -0.151 4.151 4 C -0.027 4.027 5 C -0.182 4.182 6 C -0.014 4.014 7 C 0.589 3.411 8 O -0.512 6.512 9 N -0.589 5.589 10 C 0.087 3.913 11 C -0.130 4.130 12 C -0.112 4.112 13 C -0.120 4.120 14 H 0.067 0.933 15 C 0.183 3.817 16 N -0.593 5.593 17 C -0.248 4.248 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.900 3.100 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.140 3.860 26 C -0.118 4.118 27 C 0.157 3.843 28 H 0.068 0.932 29 N -0.332 5.332 30 O 0.112 5.888 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.179 0.821 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.089 0.911 46 H 0.019 0.981 47 H 0.252 0.748 48 H 0.056 0.944 49 H 0.014 0.986 50 H 0.071 0.929 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.337 21.342 -13.016 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 C -0.208 4.208 4 C -0.090 4.090 5 C -0.204 4.204 6 C -0.173 4.173 7 C 0.374 3.626 8 O -0.387 6.387 9 N -0.321 5.321 10 C -0.036 4.036 11 C -0.169 4.169 12 C -0.151 4.151 13 C -0.141 4.141 14 H 0.085 0.915 15 C 0.057 3.943 16 N -0.315 5.315 17 C -0.378 4.378 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.730 3.270 22 H -0.202 1.202 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.013 3.987 26 C -0.157 4.157 27 C 0.056 3.944 28 H 0.086 0.914 29 N -0.037 5.037 30 O 0.041 5.959 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.123 0.877 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.197 0.803 39 H 0.085 0.915 40 H 0.128 0.872 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.107 0.893 46 H 0.037 0.963 47 H 0.062 0.938 48 H 0.075 0.925 49 H 0.032 0.968 50 H 0.089 0.911 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.131 21.085 -11.926 26.257 hybrid contribution -0.035 -1.259 -0.471 1.344 sum -10.166 19.826 -12.397 25.497 Atomic orbital electron populations 1.21901 0.93017 1.02889 1.03068 1.19820 0.96819 0.96148 0.90322 1.21897 1.01756 0.94130 1.03064 1.24451 1.00098 0.97266 0.87195 1.22447 1.02591 0.98694 0.96682 1.23833 1.02250 0.98308 0.92864 1.17077 0.81067 0.82215 0.82257 1.90875 1.41254 1.44727 1.61803 1.48201 1.40201 1.38312 1.05406 1.22449 0.92892 0.93675 0.94543 1.21981 0.98075 0.97950 0.98864 1.21498 0.98037 0.97664 0.97865 1.22256 0.97901 0.96518 0.97417 0.91485 1.20733 0.91377 0.92526 0.89688 1.44103 1.47204 1.02183 1.38054 1.19244 1.43808 0.81314 0.93426 0.91683 1.25039 1.01695 0.97808 0.95190 1.70046 1.52593 1.35563 0.96624 0.86253 0.77797 0.85378 0.77573 1.20249 1.21757 1.21613 1.21115 0.92267 0.92690 0.92656 1.22484 0.99434 0.97810 0.95958 1.21429 0.90876 0.87441 0.94662 0.91372 1.74066 1.10336 1.03227 1.16070 1.84755 1.54683 1.42873 1.13559 0.91690 0.91199 0.91962 0.87715 0.91985 0.91208 0.91692 0.80324 0.91488 0.87174 0.91947 0.91105 0.91489 0.92032 0.89300 0.96260 0.93761 0.92506 0.96773 0.91064 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.18 37.16 0.34 -0.37 16 2 C -0.01 -0.06 3.34 -91.77 -0.31 -0.37 16 3 C -0.15 -0.69 9.17 37.15 0.34 -0.35 16 4 C -0.03 -0.24 5.98 -35.35 -0.21 -0.45 16 5 C -0.18 -2.02 10.91 -39.08 -0.43 -2.45 16 6 C -0.01 -0.19 6.89 -82.53 -0.57 -0.76 16 7 C 0.59 9.98 7.65 -12.11 -0.09 9.88 16 8 O -0.51 -9.84 12.50 5.36 0.07 -9.78 16 9 N -0.59 -9.77 2.96 -165.95 -0.49 -10.26 16 10 C 0.09 1.21 6.18 -3.42 -0.02 1.19 16 11 C -0.13 -1.77 6.08 -26.35 -0.16 -1.93 16 12 C -0.11 -1.80 5.25 -26.75 -0.14 -1.94 16 13 C -0.12 -2.35 2.21 -90.55 -0.20 -2.55 16 14 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 15 C 0.18 4.40 4.63 -3.71 -0.02 4.38 16 16 N -0.59 -15.39 3.00 -172.28 -0.52 -15.90 16 17 C -0.25 -7.01 9.56 -15.06 -0.14 -7.16 16 18 H 0.07 1.83 7.89 -52.49 -0.41 1.42 16 19 C 0.00 0.03 4.89 -17.43 -0.09 -0.06 16 20 N -0.90 -26.46 11.25 55.49 0.62 -25.83 16 21 Si 0.90 22.13 29.59 -169.99 -5.03 17.10 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 25 C 0.14 3.16 6.50 -3.69 -0.02 3.14 16 26 C -0.12 -2.39 3.80 -26.63 -0.10 -2.50 16 27 C 0.16 2.94 2.63 -67.73 -0.18 2.76 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 N -0.33 -4.24 8.65 33.29 0.29 -3.95 16 30 O 0.11 1.19 11.18 17.26 0.19 1.38 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.10 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.18 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 40 H 0.11 1.47 4.18 -57.10 -0.24 1.23 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 2.38 6.12 -51.93 -0.32 2.06 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.06 1.28 7.92 -51.93 -0.41 0.87 16 49 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.07 1.59 7.11 -51.93 -0.37 1.22 16 51 H 0.07 1.42 6.49 -51.93 -0.34 1.09 16 LS Contribution 391.64 15.07 5.90 5.90 Total: -1.00 -31.81 391.64 -9.37 -41.18 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -8.41 Total: -0.31 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.99 Total: 0.47 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.10 Total: -55.95 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.26 Total: -8.39 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.81 -9.37 -41.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021642249.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.601 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds