Wall clock time and date at job start Wed Apr 1 2020 05:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46935 * 2 1 4 4 C 1.50702 * 109.47349 * 120.00400 * 2 1 3 5 5 C 1.35316 * 126.66670 * 120.30254 * 4 2 1 6 6 C 1.42268 * 103.91961 * 180.12789 * 5 4 2 7 7 C 1.48329 * 126.94066 * 179.85631 * 6 5 4 8 8 O 1.21501 * 119.99817 * 6.51760 * 7 6 5 9 9 N 1.34776 * 120.00618 * 186.79712 * 7 6 5 10 10 C 1.47070 * 120.83819 * 5.65566 * 9 7 6 11 11 C 1.53602 * 108.79262 * 126.52981 * 10 9 7 12 12 C 1.53140 * 109.54115 * 54.23798 * 11 10 9 13 13 C 1.52819 * 109.26201 * 299.01169 * 12 11 10 14 14 H 1.08994 * 109.47454 * 302.00860 * 13 12 11 15 15 C 1.53034 * 110.51730 * 181.59458 * 13 12 11 16 16 N 1.47068 * 108.50583 * 184.77420 * 15 13 12 17 17 C 1.36935 * 120.47307 * 233.21653 * 16 15 13 18 18 H 1.07999 * 120.00354 * 151.52507 * 17 16 15 19 19 C 1.38813 * 120.00086 * 331.52923 * 17 16 15 20 20 N 1.31621 * 119.99785 * 342.51709 * 19 17 16 21 21 Si 1.86802 * 119.99993 * 162.51482 * 19 17 16 22 22 H 1.48494 * 109.47128 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46588 * 120.00231 * 21 19 17 24 24 H 1.48502 * 109.47210 * 239.99634 * 21 19 17 25 25 C 1.46861 * 119.05539 * 53.19428 * 16 15 13 26 26 C 1.53309 * 109.10343 * 307.34494 * 25 16 15 27 27 C 1.46712 * 120.84785 * 185.93558 * 9 7 6 28 28 H 1.08997 * 109.53023 * 114.79366 * 27 9 7 29 29 N 1.30992 * 106.12442 * 359.59361 * 6 5 4 30 30 O 1.20901 * 111.43539 * 0.26311 * 29 6 5 31 31 H 1.08998 * 109.46954 * 299.99339 * 1 2 3 32 32 H 1.08997 * 109.47362 * 59.99706 * 1 2 3 33 33 H 1.08999 * 109.46927 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46463 * 240.00210 * 2 1 3 35 35 H 1.09001 * 109.47123 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.47714 * 299.99927 * 3 2 1 37 37 H 1.08994 * 109.47429 * 60.00313 * 3 2 1 38 38 H 1.08000 * 128.03794 * 359.97438 * 5 4 2 39 39 H 1.09008 * 109.54083 * 246.44852 * 10 9 7 40 40 H 1.08998 * 109.54524 * 6.70430 * 10 9 7 41 41 H 1.08998 * 109.59176 * 294.14200 * 11 10 9 42 42 H 1.09006 * 109.34531 * 174.18001 * 11 10 9 43 43 H 1.09006 * 109.50473 * 179.08336 * 12 11 10 44 44 H 1.08995 * 109.50925 * 58.95512 * 12 11 10 45 45 H 1.09000 * 109.71185 * 64.94742 * 15 13 12 46 46 H 1.09004 * 109.53242 * 304.49595 * 15 13 12 47 47 H 0.97000 * 119.99764 * 180.02562 * 20 19 17 48 48 H 1.09004 * 109.53339 * 187.45607 * 25 16 15 49 49 H 1.08998 * 109.53177 * 67.22918 * 25 16 15 50 50 H 1.09006 * 109.56230 * 294.26541 * 26 25 16 51 51 H 1.09001 * 109.65147 * 173.99535 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.8182 -1.8117 1.2634 6 6 2.9914 -2.0670 2.6523 7 6 3.7709 -3.1700 3.2654 8 8 4.4414 -3.9023 2.5652 9 7 3.7310 -3.3634 4.5987 10 6 2.8275 -2.5731 5.4484 11 6 1.9750 -3.5334 6.2913 12 6 2.8903 -4.4913 7.0592 13 6 3.7122 -5.3096 6.0640 14 1 3.0413 -5.8533 5.3990 15 6 4.6100 -6.3059 6.8010 16 7 5.4613 -6.9863 5.8135 17 6 5.5058 -8.3539 5.7598 18 1 5.7222 -8.8509 4.8257 19 6 5.2726 -9.1014 6.9060 20 7 5.3502 -8.5321 8.0901 21 14 4.8484 -10.9154 6.7677 22 1 4.8247 -11.3105 5.3365 23 1 5.8704 -11.7187 7.4858 24 1 3.5137 -11.1591 7.3713 25 6 6.2628 -6.1781 4.8854 26 6 5.3491 -5.1674 4.1825 27 6 4.5922 -4.3632 5.2398 28 1 5.3044 -3.8634 5.8964 29 7 2.3281 -1.1281 3.2803 30 8 1.7928 -0.3709 2.5045 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8899 37 1 1.6767 1.9563 0.8899 38 1 3.2184 -2.3688 0.4293 39 1 3.4138 -1.9297 6.1045 40 1 2.1786 -1.9619 4.8211 41 1 1.3160 -4.1059 5.6386 42 1 1.3761 -2.9589 6.9981 43 1 2.2854 -5.1619 7.6697 44 1 3.5602 -3.9189 7.7007 45 1 3.9948 -7.0390 7.3228 46 1 5.2339 -5.7728 7.5185 47 1 5.1876 -9.0545 8.8910 48 1 6.7264 -6.8280 4.1431 49 1 7.0361 -5.6463 5.4396 50 1 4.6378 -5.6974 3.5489 51 1 5.9496 -4.4931 3.5720 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021642249.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:19 Heat of formation + Delta-G solvation = 44.321694 kcal Electronic energy + Delta-G solvation = -31995.165840 eV Core-core repulsion = 27898.240993 eV Total energy + Delta-G solvation = -4096.924847 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -46.19775 -41.82678 -39.25874 -37.50231 -36.98756 -35.34750 -34.38929 -34.16557 -32.11697 -31.59689 -30.90543 -27.99528 -27.47661 -27.06188 -25.32689 -24.36580 -24.11113 -23.86823 -22.79642 -21.38838 -21.18399 -19.74320 -18.89665 -18.74314 -18.35010 -17.64189 -17.22536 -16.76915 -16.50782 -16.02776 -15.68812 -15.60677 -15.47622 -15.25962 -15.16195 -14.76868 -14.51114 -14.14357 -14.12481 -14.08198 -13.83210 -13.67029 -13.26883 -13.04540 -12.98948 -12.89887 -12.76206 -12.52595 -12.39803 -12.21020 -12.14883 -12.09715 -12.02769 -11.85482 -11.77342 -11.70029 -11.47859 -11.40956 -11.09088 -10.69229 -10.48924 -10.45614 -9.68991 -8.69686 -7.91103 -5.36712 -0.01390 0.63775 1.42600 1.44360 1.55697 1.60228 1.97380 1.98226 2.47889 2.75398 3.21473 3.28411 3.55947 3.67332 3.78849 3.81597 3.92594 3.93616 4.00699 4.05818 4.17025 4.20236 4.28942 4.33474 4.37207 4.55112 4.56266 4.64348 4.77561 4.78234 4.82045 4.85081 4.85801 4.89845 4.96320 5.00164 5.00569 5.00682 5.09529 5.17622 5.19646 5.30095 5.36792 5.40784 5.42300 5.45590 5.52461 5.62305 5.69710 6.21131 6.36012 6.80773 7.04117 7.11009 7.80450 8.32938 9.15185 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021462 B = 0.002539 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.342747 B =11023.286873 C =11460.664724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.011 4.011 3 C -0.150 4.150 4 C -0.004 4.004 5 C -0.195 4.195 6 C -0.038 4.038 7 C 0.584 3.416 8 O -0.545 6.545 9 N -0.591 5.591 10 C 0.086 3.914 11 C -0.121 4.121 12 C -0.108 4.108 13 C -0.106 4.106 14 H 0.043 0.957 15 C 0.193 3.807 16 N -0.612 5.612 17 C -0.266 4.266 18 H 0.059 0.941 19 C -0.046 4.046 20 N -0.930 5.930 21 Si 0.966 3.034 22 H -0.271 1.271 23 H -0.288 1.288 24 H -0.286 1.286 25 C 0.138 3.862 26 C -0.097 4.097 27 C 0.164 3.836 28 H 0.072 0.928 29 N -0.338 5.338 30 O 0.123 5.877 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.123 0.877 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.189 0.811 39 H 0.082 0.918 40 H 0.121 0.879 41 H 0.054 0.946 42 H 0.106 0.894 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.004 0.996 47 H 0.252 0.748 48 H 0.051 0.949 49 H 0.017 0.983 50 H 0.048 0.952 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.069 23.588 -14.191 30.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 C -0.208 4.208 4 C -0.067 4.067 5 C -0.218 4.218 6 C -0.195 4.195 7 C 0.371 3.629 8 O -0.422 6.422 9 N -0.323 5.323 10 C -0.036 4.036 11 C -0.159 4.159 12 C -0.146 4.146 13 C -0.127 4.127 14 H 0.062 0.938 15 C 0.067 3.933 16 N -0.335 5.335 17 C -0.397 4.397 18 H 0.077 0.923 19 C -0.242 4.242 20 N -0.576 5.576 21 Si 0.794 3.206 22 H -0.196 1.196 23 H -0.215 1.215 24 H -0.213 1.213 25 C 0.012 3.988 26 C -0.136 4.136 27 C 0.061 3.939 28 H 0.090 0.910 29 N -0.041 5.041 30 O 0.050 5.950 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.206 0.794 39 H 0.100 0.900 40 H 0.138 0.862 41 H 0.072 0.928 42 H 0.124 0.876 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.022 0.978 47 H 0.061 0.939 48 H 0.070 0.930 49 H 0.035 0.965 50 H 0.066 0.934 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.871 23.354 -13.093 29.288 hybrid contribution 0.499 -1.869 -0.177 1.943 sum -11.373 21.485 -13.270 27.695 Atomic orbital electron populations 1.21917 0.92149 1.02745 1.03988 1.20088 0.97418 0.96543 0.88934 1.21911 1.01420 0.93446 1.03974 1.25058 0.98226 0.96171 0.87260 1.22634 1.03580 0.99765 0.95795 1.23498 1.03549 0.98375 0.94110 1.17438 0.80834 0.82576 0.82061 1.90839 1.42765 1.46131 1.62438 1.48204 1.40320 1.37929 1.05844 1.22662 0.92768 0.93580 0.94551 1.21941 0.97513 0.97454 0.99026 1.21469 0.98153 0.97800 0.97213 1.21988 0.97115 0.96058 0.97547 0.93816 1.20530 0.91004 0.92327 0.89449 1.44368 1.48335 1.02061 1.38747 1.19484 1.44042 0.82721 0.93406 0.92286 1.25775 1.01736 1.01892 0.94800 1.70177 1.53326 1.37013 0.97083 0.85236 0.77341 0.80355 0.77694 1.19581 1.21494 1.21292 1.21204 0.92592 0.92882 0.92141 1.22208 0.98583 0.97117 0.95714 1.21148 0.90967 0.87722 0.94038 0.90988 1.73995 1.10314 1.03101 1.16693 1.84728 1.53833 1.42093 1.14347 0.92013 0.89131 0.92637 0.85903 0.92546 0.89138 0.92035 0.79411 0.90018 0.86153 0.92751 0.87603 0.91592 0.91044 0.92399 0.97763 0.93897 0.93020 0.96515 0.93361 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.18 71.98 0.66 -0.29 16 2 C -0.01 -0.08 3.34 -11.54 -0.04 -0.12 16 3 C -0.15 -0.91 9.17 71.98 0.66 -0.25 16 4 C 0.00 -0.06 5.98 25.01 0.15 0.09 16 5 C -0.20 -4.08 10.91 22.60 0.25 -3.83 16 6 C -0.04 -1.03 6.89 42.96 0.30 -0.74 16 7 C 0.58 19.78 7.65 86.93 0.66 20.44 16 8 O -0.54 -21.38 12.50 -3.72 -0.05 -21.43 16 9 N -0.59 -19.35 2.96 -797.25 -2.36 -21.71 16 10 C 0.09 2.22 6.18 86.47 0.53 2.76 16 11 C -0.12 -3.04 6.08 30.84 0.19 -2.85 16 12 C -0.11 -3.38 5.25 30.58 0.16 -3.22 16 13 C -0.11 -4.25 2.21 -10.75 -0.02 -4.27 16 14 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 15 C 0.19 9.63 4.63 86.28 0.40 10.03 16 16 N -0.61 -32.98 3.00 -698.97 -2.10 -35.08 16 17 C -0.27 -15.54 9.56 84.03 0.80 -14.73 16 18 H 0.06 3.43 7.89 -2.91 -0.02 3.41 16 19 C -0.05 -2.67 4.89 84.86 0.42 -2.26 16 20 N -0.93 -55.89 11.25 21.65 0.24 -55.65 16 21 Si 0.97 46.36 29.59 68.60 2.03 48.39 16 22 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 25 C 0.14 6.47 6.50 86.41 0.56 7.03 16 26 C -0.10 -4.07 3.80 30.66 0.12 -3.96 16 27 C 0.16 6.17 2.63 45.01 0.12 6.29 16 28 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 29 N -0.34 -8.05 8.65 -49.52 -0.43 -8.48 16 30 O 0.12 2.36 11.18 71.92 0.80 3.16 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.12 0.58 8.12 -2.38 -0.02 0.56 16 35 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.19 3.46 8.06 -2.91 -0.02 3.43 16 39 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.12 2.96 4.18 -12.60 -0.05 2.90 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 43 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 44 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.06 3.23 6.12 -2.39 -0.01 3.22 16 46 H 0.00 0.22 8.14 -2.39 -0.02 0.21 16 47 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 48 H 0.05 2.42 7.92 -2.39 -0.02 2.40 16 49 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.05 2.24 7.11 -2.38 -0.02 2.23 16 51 H 0.08 3.14 6.49 -2.39 -0.02 3.12 16 Total: -1.00 -71.18 391.64 4.93 -66.25 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.87 Total: 14.43 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 5.91 Total: 10.12 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -4.64 Total: -120.92 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.76 Total: -18.27 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -71.18 4.93 -66.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021642249.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.570 kcal (2) G-P(sol) polarization free energy of solvation -71.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds