Wall clock time and date at job start Wed Apr 1 2020 05:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46885 * 2 1 4 4 C 1.50693 * 109.46975 * 119.99960 * 2 1 3 5 5 C 1.35315 * 126.66453 * 120.00498 * 4 2 1 6 6 C 1.42274 * 103.92058 * 179.97438 * 5 4 2 7 7 C 1.48336 * 126.93817 * 179.97438 * 6 5 4 8 8 O 1.21492 * 119.99964 * 353.67489 * 7 6 5 9 9 N 1.34779 * 120.00019 * 173.67506 * 7 6 5 10 10 C 1.47067 * 120.84511 * 4.24153 * 9 7 6 11 11 C 1.52658 * 109.30423 * 233.37017 * 10 9 7 12 12 C 1.53152 * 109.68869 * 306.25103 * 11 10 9 13 13 C 1.52813 * 109.26213 * 60.70941 * 12 11 10 14 14 H 1.09000 * 109.47566 * 57.99718 * 13 12 11 15 15 C 1.53039 * 110.51644 * 178.40528 * 13 12 11 16 16 N 1.47070 * 108.50661 * 175.22796 * 15 13 12 17 17 C 1.36932 * 120.47136 * 126.82583 * 16 15 13 18 18 H 1.07997 * 120.00411 * 328.39834 * 17 16 15 19 19 C 1.38814 * 120.00038 * 148.39291 * 17 16 15 20 20 N 1.31614 * 120.00194 * 165.12587 * 19 17 16 21 21 Si 1.86800 * 119.99728 * 345.12830 * 19 17 16 22 22 H 1.48501 * 109.47123 * 90.38005 * 21 19 17 23 23 H 1.48507 * 109.46786 * 210.38053 * 21 19 17 24 24 H 1.48498 * 109.47372 * 330.37462 * 21 19 17 25 25 C 1.46867 * 119.05325 * 306.80652 * 16 15 13 26 26 C 1.53314 * 109.09910 * 52.65746 * 25 16 15 27 27 C 1.46710 * 120.84454 * 184.52181 * 9 7 6 28 28 H 1.09001 * 109.52677 * 245.21033 * 27 9 7 29 29 N 1.30984 * 106.12435 * 359.97438 * 6 5 4 30 30 O 1.20903 * 111.43847 * 359.69811 * 29 6 5 31 31 H 1.08995 * 109.47563 * 300.00282 * 1 2 3 32 32 H 1.09005 * 109.47549 * 60.00220 * 1 2 3 33 33 H 1.09002 * 109.47527 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47193 * 240.00184 * 2 1 3 35 35 H 1.08990 * 109.47543 * 59.99889 * 3 2 1 36 36 H 1.09007 * 109.47112 * 180.02562 * 3 2 1 37 37 H 1.09004 * 109.47062 * 299.99704 * 3 2 1 38 38 H 1.07998 * 128.04244 * 359.97370 * 5 4 2 39 39 H 1.09004 * 109.53901 * 353.29030 * 10 9 7 40 40 H 1.08998 * 109.54360 * 113.54649 * 10 9 7 41 41 H 1.08993 * 109.52335 * 186.11167 * 11 10 9 42 42 H 1.09004 * 109.29654 * 66.24511 * 11 10 9 43 43 H 1.08995 * 109.50462 * 300.77126 * 12 11 10 44 44 H 1.09003 * 109.50470 * 180.64496 * 12 11 10 45 45 H 1.08998 * 109.49901 * 55.52645 * 15 13 12 46 46 H 1.08998 * 109.74616 * 295.07847 * 15 13 12 47 47 H 0.97000 * 120.00270 * 180.02562 * 20 19 17 48 48 H 1.08995 * 109.53460 * 292.76668 * 25 16 15 49 49 H 1.08997 * 109.59039 * 172.57595 * 25 16 15 50 50 H 1.09001 * 109.55343 * 186.05070 * 26 25 16 51 51 H 1.08997 * 109.56094 * 65.73718 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2304 5 6 2.8133 -1.8148 1.2635 6 6 2.9918 -2.0663 2.6524 7 6 3.7714 -3.1693 3.2656 8 8 4.2451 -4.0412 2.5646 9 7 3.9543 -3.2042 4.6005 10 6 3.3128 -2.2115 5.4757 11 6 4.3735 -1.5528 6.3540 12 6 5.1715 -2.6297 7.0949 13 6 5.8645 -3.5338 6.0763 14 1 6.5119 -2.9326 5.4379 15 6 6.7034 -4.5983 6.7871 16 7 7.2557 -5.5105 5.7743 17 6 8.6006 -5.7634 5.7272 18 1 9.3045 -4.9992 6.0219 19 6 9.0594 -7.0021 5.3006 20 7 10.3249 -7.1586 4.9745 21 14 7.8807 -8.4470 5.1894 22 1 7.2769 -8.4900 3.8334 23 1 8.6202 -9.7097 5.4424 24 1 6.8079 -8.2900 6.2042 25 6 6.3441 -6.1467 4.8145 26 6 5.4932 -5.0654 4.1383 27 6 4.8033 -4.2297 5.2169 28 1 4.1931 -4.8782 5.8455 29 7 2.3287 -1.1273 3.2803 30 8 1.7982 -0.3668 2.5045 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.1300 1.4426 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 3.2092 -2.3752 0.4295 39 1 2.8224 -1.4517 4.8670 40 1 2.5754 -2.7055 6.1083 41 1 3.8907 -0.8964 7.0779 42 1 5.0475 -0.9682 5.7277 43 1 4.4962 -3.2248 7.7096 44 1 5.9202 -2.1558 7.7297 45 1 6.0727 -5.1563 7.4791 46 1 7.5165 -4.1214 7.3344 47 1 10.6454 -8.0242 4.6761 48 1 5.6940 -6.8472 5.3386 49 1 6.9220 -6.6804 4.0601 50 1 4.7414 -5.5360 3.5047 51 1 6.1328 -4.4234 3.5328 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021642251.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:23 Heat of formation + Delta-G solvation = 69.365679 kcal Electronic energy + Delta-G solvation = -32113.235027 eV Core-core repulsion = 28017.396169 eV Total energy + Delta-G solvation = -4095.838858 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.31454 -40.57628 -37.95055 -36.56208 -36.12869 -34.26762 -33.09452 -32.45302 -31.12592 -30.40774 -29.80581 -27.68331 -26.03030 -25.70966 -23.97625 -23.55642 -22.97173 -22.32852 -21.84467 -20.30351 -19.74054 -18.76862 -17.99030 -17.55814 -16.85766 -16.55766 -16.04051 -15.43485 -15.16104 -15.05130 -14.77568 -14.34769 -14.28603 -14.10679 -13.86853 -13.74340 -13.60846 -13.09798 -13.08415 -12.70515 -12.61582 -12.54628 -12.38450 -12.11430 -11.95361 -11.80328 -11.79071 -11.46879 -11.44242 -11.08054 -10.96722 -10.70983 -10.64555 -10.49689 -10.32183 -10.24359 -10.09100 -9.74172 -9.60397 -9.41853 -9.05648 -8.56087 -8.44269 -6.84614 -5.88723 -3.30518 0.90988 1.47446 2.57425 2.84164 3.14537 3.39432 3.52138 3.55444 3.73836 4.00054 4.36942 4.53127 4.58167 4.58463 4.72547 4.83138 4.90636 4.94999 5.03348 5.10964 5.12758 5.15999 5.20322 5.30821 5.34625 5.40851 5.43711 5.46523 5.52681 5.62758 5.69127 5.71128 5.74477 5.82078 5.91996 5.94276 6.06326 6.11218 6.18369 6.21013 6.28449 6.36743 6.55762 6.65921 6.76469 6.80610 6.89758 7.11181 7.40468 7.79164 8.06169 8.15334 8.39315 8.99780 9.77228 10.15755 11.27414 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017523 B = 0.002832 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.548684 B = 9885.621638 C =10749.889306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.012 4.012 3 C -0.152 4.152 4 C -0.024 4.024 5 C -0.181 4.181 6 C -0.011 4.011 7 C 0.591 3.409 8 O -0.509 6.509 9 N -0.590 5.590 10 C 0.077 3.923 11 C -0.130 4.130 12 C -0.114 4.114 13 C -0.115 4.115 14 H 0.074 0.926 15 C 0.159 3.841 16 N -0.608 5.608 17 C -0.260 4.260 18 H 0.083 0.917 19 C 0.024 3.976 20 N -0.914 5.914 21 Si 0.890 3.110 22 H -0.287 1.287 23 H -0.305 1.305 24 H -0.270 1.270 25 C 0.119 3.881 26 C -0.125 4.125 27 C 0.158 3.842 28 H 0.070 0.930 29 N -0.333 5.333 30 O 0.110 5.890 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.180 0.820 39 H 0.123 0.877 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.023 0.977 46 H 0.067 0.933 47 H 0.262 0.738 48 H 0.023 0.977 49 H 0.075 0.925 50 H 0.086 0.914 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.206 17.942 -6.601 29.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 C -0.209 4.209 4 C -0.087 4.087 5 C -0.204 4.204 6 C -0.170 4.170 7 C 0.376 3.624 8 O -0.383 6.383 9 N -0.322 5.322 10 C -0.046 4.046 11 C -0.168 4.168 12 C -0.152 4.152 13 C -0.136 4.136 14 H 0.093 0.907 15 C 0.033 3.967 16 N -0.331 5.331 17 C -0.388 4.388 18 H 0.101 0.899 19 C -0.175 4.175 20 N -0.557 5.557 21 Si 0.721 3.279 22 H -0.214 1.214 23 H -0.233 1.233 24 H -0.195 1.195 25 C -0.007 4.007 26 C -0.164 4.164 27 C 0.056 3.944 28 H 0.088 0.912 29 N -0.039 5.039 30 O 0.041 5.959 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.198 0.802 39 H 0.140 0.860 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.041 0.959 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.041 0.959 49 H 0.093 0.907 50 H 0.104 0.896 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.970 17.580 -5.715 28.712 hybrid contribution -0.259 -1.181 -0.679 1.387 sum -22.229 16.399 -6.394 28.354 Atomic orbital electron populations 1.21898 0.93011 1.02848 1.03080 1.19833 0.96808 0.96214 0.90309 1.21903 1.01838 0.94071 1.03083 1.24455 1.00101 0.97035 0.87123 1.22460 1.02522 0.98729 0.96665 1.23804 1.02104 0.98167 0.92938 1.17099 0.79747 0.83397 0.82181 1.90870 1.48957 1.36470 1.61986 1.48133 1.47960 1.31059 1.05066 1.22451 0.95378 0.92504 0.94259 1.21784 0.98029 0.98213 0.98770 1.21530 0.99126 0.96785 0.97782 1.22078 0.96558 0.97791 0.97201 0.90738 1.20885 0.95388 0.90027 0.90427 1.44391 1.04349 1.52627 1.31747 1.18902 0.80526 0.97151 1.42238 0.89920 1.25365 0.95450 0.97345 0.99299 1.69783 1.14440 1.24278 1.47181 0.86859 0.80645 0.82422 0.77963 1.21415 1.23319 1.19520 1.21588 0.92456 0.94173 0.92513 1.22574 0.99341 0.98341 0.96129 1.21360 0.90268 0.87731 0.95027 0.91215 1.73851 1.10863 1.03221 1.15961 1.84753 1.54818 1.42739 1.13593 0.91703 0.91178 0.91990 0.87648 0.91690 0.91919 0.91169 0.80242 0.86033 0.91595 0.90877 0.91845 0.91910 0.91410 0.95867 0.91482 0.92790 0.95886 0.90718 0.89618 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.17 37.16 0.34 -0.32 16 2 C -0.01 -0.06 3.34 -91.78 -0.31 -0.37 16 3 C -0.15 -0.70 9.18 37.16 0.34 -0.36 16 4 C -0.02 -0.21 5.98 -35.35 -0.21 -0.42 16 5 C -0.18 -1.99 10.91 -39.07 -0.43 -2.41 16 6 C -0.01 -0.15 6.95 -82.52 -0.57 -0.73 16 7 C 0.59 9.74 7.62 -12.10 -0.09 9.65 16 8 O -0.51 -9.73 12.60 5.37 0.07 -9.67 16 9 N -0.59 -9.21 2.98 -166.53 -0.50 -9.70 16 10 C 0.08 0.97 6.29 -3.91 -0.02 0.94 16 11 C -0.13 -1.52 6.05 -26.83 -0.16 -1.68 16 12 C -0.11 -1.50 5.25 -26.75 -0.14 -1.64 16 13 C -0.12 -1.97 2.21 -90.56 -0.20 -2.17 16 14 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 15 C 0.16 3.20 5.86 -3.71 -0.02 3.18 16 16 N -0.61 -15.01 2.74 -172.28 -0.47 -15.48 16 17 C -0.26 -7.49 10.03 -15.06 -0.15 -7.64 16 18 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 19 C 0.02 0.72 5.30 -17.43 -0.09 0.63 16 20 N -0.91 -28.84 13.97 55.49 0.78 -28.06 16 21 Si 0.89 23.41 24.27 -169.99 -4.13 19.28 16 22 H -0.29 -7.37 6.61 56.52 0.37 -7.00 16 23 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 24 H -0.27 -6.92 6.45 56.52 0.36 -6.56 16 25 C 0.12 2.78 4.16 -3.68 -0.02 2.76 16 26 C -0.12 -2.57 3.82 -26.62 -0.10 -2.67 16 27 C 0.16 2.76 2.63 -67.73 -0.18 2.58 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 N -0.33 -4.06 8.52 33.29 0.28 -3.78 16 30 O 0.11 1.13 11.18 17.24 0.19 1.32 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.11 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.18 1.75 8.06 -52.49 -0.42 1.32 16 39 H 0.12 1.50 3.80 -72.15 -0.27 1.22 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 1.34 7.93 -51.93 -0.41 0.92 16 47 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 48 H 0.02 0.53 6.78 -51.93 -0.35 0.18 16 49 H 0.07 1.92 4.67 -51.93 -0.24 1.68 16 50 H 0.09 1.77 6.15 -51.93 -0.32 1.45 16 51 H 0.07 1.59 7.43 -51.93 -0.39 1.21 16 LS Contribution 384.47 15.07 5.79 5.79 Total: -1.00 -33.51 384.47 -8.37 -41.88 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -8.37 Total: -0.91 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -2.02 Total: -0.68 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.09 Total: -57.02 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.26 Total: -8.35 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -4.13 Total: 19.28 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.51 -8.37 -41.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021642251.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.247 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds