Wall clock time and date at job start Wed Apr 1 2020 05:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46885 * 2 1 4 4 C 1.50693 * 109.46975 * 119.99960 * 2 1 3 5 5 C 1.35315 * 126.66453 * 120.00498 * 4 2 1 6 6 C 1.42274 * 103.92058 * 179.97438 * 5 4 2 7 7 C 1.48336 * 126.93817 * 179.97438 * 6 5 4 8 8 O 1.21492 * 119.99964 * 353.67489 * 7 6 5 9 9 N 1.34779 * 120.00019 * 173.67506 * 7 6 5 10 10 C 1.47067 * 120.84511 * 4.24153 * 9 7 6 11 11 C 1.52658 * 109.30423 * 233.37017 * 10 9 7 12 12 C 1.53152 * 109.68869 * 306.25103 * 11 10 9 13 13 C 1.52813 * 109.26213 * 60.70941 * 12 11 10 14 14 H 1.09000 * 109.47566 * 57.99718 * 13 12 11 15 15 C 1.53039 * 110.51644 * 178.40528 * 13 12 11 16 16 N 1.47070 * 108.50661 * 175.22796 * 15 13 12 17 17 C 1.36932 * 120.47136 * 126.82583 * 16 15 13 18 18 H 1.07997 * 120.00411 * 328.39834 * 17 16 15 19 19 C 1.38814 * 120.00038 * 148.39291 * 17 16 15 20 20 N 1.31614 * 120.00194 * 165.12587 * 19 17 16 21 21 Si 1.86800 * 119.99728 * 345.12830 * 19 17 16 22 22 H 1.48501 * 109.47123 * 90.38005 * 21 19 17 23 23 H 1.48507 * 109.46786 * 210.38053 * 21 19 17 24 24 H 1.48498 * 109.47372 * 330.37462 * 21 19 17 25 25 C 1.46867 * 119.05325 * 306.80652 * 16 15 13 26 26 C 1.53314 * 109.09910 * 52.65746 * 25 16 15 27 27 C 1.46710 * 120.84454 * 184.52181 * 9 7 6 28 28 H 1.09001 * 109.52677 * 245.21033 * 27 9 7 29 29 N 1.30984 * 106.12435 * 359.97438 * 6 5 4 30 30 O 1.20903 * 111.43847 * 359.69811 * 29 6 5 31 31 H 1.08995 * 109.47563 * 300.00282 * 1 2 3 32 32 H 1.09005 * 109.47549 * 60.00220 * 1 2 3 33 33 H 1.09002 * 109.47527 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47193 * 240.00184 * 2 1 3 35 35 H 1.08990 * 109.47543 * 59.99889 * 3 2 1 36 36 H 1.09007 * 109.47112 * 180.02562 * 3 2 1 37 37 H 1.09004 * 109.47062 * 299.99704 * 3 2 1 38 38 H 1.07998 * 128.04244 * 359.97370 * 5 4 2 39 39 H 1.09004 * 109.53901 * 353.29030 * 10 9 7 40 40 H 1.08998 * 109.54360 * 113.54649 * 10 9 7 41 41 H 1.08993 * 109.52335 * 186.11167 * 11 10 9 42 42 H 1.09004 * 109.29654 * 66.24511 * 11 10 9 43 43 H 1.08995 * 109.50462 * 300.77126 * 12 11 10 44 44 H 1.09003 * 109.50470 * 180.64496 * 12 11 10 45 45 H 1.08998 * 109.49901 * 55.52645 * 15 13 12 46 46 H 1.08998 * 109.74616 * 295.07847 * 15 13 12 47 47 H 0.97000 * 120.00270 * 180.02562 * 20 19 17 48 48 H 1.08995 * 109.53460 * 292.76668 * 25 16 15 49 49 H 1.08997 * 109.59039 * 172.57595 * 25 16 15 50 50 H 1.09001 * 109.55343 * 186.05070 * 26 25 16 51 51 H 1.08997 * 109.56094 * 65.73718 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2304 5 6 2.8133 -1.8148 1.2635 6 6 2.9918 -2.0663 2.6524 7 6 3.7714 -3.1693 3.2656 8 8 4.2451 -4.0412 2.5646 9 7 3.9543 -3.2042 4.6005 10 6 3.3128 -2.2115 5.4757 11 6 4.3735 -1.5528 6.3540 12 6 5.1715 -2.6297 7.0949 13 6 5.8645 -3.5338 6.0763 14 1 6.5119 -2.9326 5.4379 15 6 6.7034 -4.5983 6.7871 16 7 7.2557 -5.5105 5.7743 17 6 8.6006 -5.7634 5.7272 18 1 9.3045 -4.9992 6.0219 19 6 9.0594 -7.0021 5.3006 20 7 10.3249 -7.1586 4.9745 21 14 7.8807 -8.4470 5.1894 22 1 7.2769 -8.4900 3.8334 23 1 8.6202 -9.7097 5.4424 24 1 6.8079 -8.2900 6.2042 25 6 6.3441 -6.1467 4.8145 26 6 5.4932 -5.0654 4.1383 27 6 4.8033 -4.2297 5.2169 28 1 4.1931 -4.8782 5.8455 29 7 2.3287 -1.1273 3.2803 30 8 1.7982 -0.3668 2.5045 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.1300 1.4426 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 3.2092 -2.3752 0.4295 39 1 2.8224 -1.4517 4.8670 40 1 2.5754 -2.7055 6.1083 41 1 3.8907 -0.8964 7.0779 42 1 5.0475 -0.9682 5.7277 43 1 4.4962 -3.2248 7.7096 44 1 5.9202 -2.1558 7.7297 45 1 6.0727 -5.1563 7.4791 46 1 7.5165 -4.1214 7.3344 47 1 10.6454 -8.0242 4.6761 48 1 5.6940 -6.8472 5.3386 49 1 6.9220 -6.6804 4.0601 50 1 4.7414 -5.5360 3.5047 51 1 6.1328 -4.4234 3.5328 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021642251.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:22 Heat of formation + Delta-G solvation = 48.929056 kcal Electronic energy + Delta-G solvation = -32114.121226 eV Core-core repulsion = 28017.396169 eV Total energy + Delta-G solvation = -4096.725057 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -46.21430 -41.89741 -39.39931 -37.70577 -37.01421 -35.39116 -34.40517 -34.24059 -32.50731 -31.66652 -31.31091 -28.00992 -27.49359 -27.18918 -25.20605 -24.45185 -24.35604 -23.84035 -22.85483 -21.65781 -21.23651 -19.81394 -18.90359 -18.80452 -18.43640 -17.77752 -17.40296 -16.91221 -16.51238 -16.12530 -15.92362 -15.65798 -15.55859 -15.44026 -14.99169 -14.89227 -14.58507 -14.40741 -14.13664 -14.10746 -14.01881 -13.88839 -13.58681 -13.30464 -13.07037 -13.00313 -12.77632 -12.43299 -12.36374 -12.28358 -12.16470 -12.10635 -11.97758 -11.85198 -11.75925 -11.65265 -11.51393 -11.36646 -11.28305 -10.73042 -10.52683 -10.49896 -9.72869 -8.89946 -8.20297 -5.58637 -0.04308 0.61196 1.28626 1.35444 1.45747 1.55834 1.92682 1.97442 2.38199 2.71098 3.03101 3.24992 3.27209 3.57994 3.69663 3.78395 3.87341 3.90445 3.99206 4.02327 4.14628 4.15296 4.22348 4.28719 4.31689 4.39146 4.51870 4.53553 4.66883 4.71251 4.77907 4.80722 4.82906 4.84442 4.87431 4.93592 4.98793 4.99315 5.02745 5.06696 5.16086 5.16526 5.26031 5.27724 5.39249 5.40667 5.45673 5.54449 5.84987 6.09044 6.17686 6.78956 6.87558 7.02132 7.56394 7.98296 8.99624 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017523 B = 0.002832 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.548684 B = 9885.621638 C =10749.889306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.012 4.012 3 C -0.151 4.151 4 C -0.001 4.001 5 C -0.198 4.198 6 C -0.036 4.036 7 C 0.583 3.417 8 O -0.547 6.547 9 N -0.590 5.590 10 C 0.073 3.927 11 C -0.123 4.123 12 C -0.107 4.107 13 C -0.104 4.104 14 H 0.045 0.955 15 C 0.155 3.845 16 N -0.622 5.622 17 C -0.250 4.250 18 H 0.050 0.950 19 C -0.034 4.034 20 N -0.960 5.960 21 Si 0.952 3.048 22 H -0.282 1.282 23 H -0.307 1.307 24 H -0.254 1.254 25 C 0.117 3.883 26 C -0.108 4.108 27 C 0.161 3.839 28 H 0.085 0.915 29 N -0.335 5.335 30 O 0.122 5.878 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.122 0.878 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.186 0.814 39 H 0.128 0.872 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.049 0.951 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.045 0.955 46 H 0.062 0.938 47 H 0.262 0.738 48 H 0.037 0.963 49 H 0.046 0.954 50 H 0.086 0.914 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.012 19.741 -6.150 33.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 C -0.208 4.208 4 C -0.064 4.064 5 C -0.221 4.221 6 C -0.193 4.193 7 C 0.370 3.630 8 O -0.425 6.425 9 N -0.322 5.322 10 C -0.048 4.048 11 C -0.161 4.161 12 C -0.145 4.145 13 C -0.125 4.125 14 H 0.063 0.937 15 C 0.030 3.970 16 N -0.346 5.346 17 C -0.379 4.379 18 H 0.068 0.932 19 C -0.229 4.229 20 N -0.606 5.606 21 Si 0.781 3.219 22 H -0.209 1.209 23 H -0.236 1.236 24 H -0.178 1.178 25 C -0.009 4.009 26 C -0.148 4.148 27 C 0.059 3.941 28 H 0.103 0.897 29 N -0.039 5.039 30 O 0.050 5.950 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.140 0.860 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.203 0.797 39 H 0.144 0.856 40 H 0.103 0.897 41 H 0.126 0.874 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.063 0.937 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.055 0.945 49 H 0.064 0.936 50 H 0.104 0.896 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -25.825 19.419 -5.217 32.730 hybrid contribution 0.898 -1.556 -0.882 2.002 sum -24.927 17.863 -6.099 31.267 Atomic orbital electron populations 1.21909 0.91936 1.02814 1.04026 1.20093 0.97578 0.96488 0.88915 1.21918 1.01324 0.93521 1.04051 1.25028 0.98216 0.95917 0.87246 1.22632 1.03650 0.99919 0.95899 1.23502 1.03379 0.98348 0.94071 1.17483 0.79527 0.83708 0.82272 1.90830 1.50708 1.38157 1.62786 1.48180 1.47493 1.31166 1.05320 1.22702 0.95822 0.92093 0.94189 1.21770 0.97474 0.97906 0.98971 1.21509 0.99585 0.96572 0.96833 1.21895 0.95890 0.97098 0.97590 0.93670 1.21094 0.95891 0.90045 0.89968 1.44520 1.03096 1.53596 1.33430 1.18839 0.82269 0.96213 1.40614 0.93246 1.26025 0.96972 1.00036 0.99856 1.69918 1.16526 1.24839 1.49362 0.85846 0.78867 0.78714 0.78475 1.20870 1.23583 1.17822 1.21585 0.92291 0.95112 0.91868 1.22314 0.98467 0.97525 0.96452 1.21178 0.90696 0.88212 0.94012 0.89705 1.73795 1.10723 1.02950 1.16419 1.84727 1.54011 1.42003 1.14286 0.91898 0.89171 0.92516 0.86043 0.91879 0.92758 0.89129 0.79666 0.85554 0.89666 0.87390 0.93210 0.89951 0.90324 0.93663 0.91955 0.92890 0.94477 0.93561 0.89618 0.94239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.17 71.98 0.66 -0.22 16 2 C -0.01 -0.09 3.34 -11.54 -0.04 -0.13 16 3 C -0.15 -0.98 9.18 71.98 0.66 -0.32 16 4 C 0.00 -0.01 5.98 25.01 0.15 0.14 16 5 C -0.20 -4.19 10.91 22.60 0.25 -3.95 16 6 C -0.04 -0.95 6.95 42.96 0.30 -0.65 16 7 C 0.58 19.29 7.62 86.93 0.66 19.95 16 8 O -0.55 -21.61 12.60 -3.69 -0.05 -21.66 16 9 N -0.59 -17.78 2.98 -799.09 -2.38 -20.16 16 10 C 0.07 1.64 6.29 86.16 0.54 2.18 16 11 C -0.12 -2.49 6.05 30.53 0.18 -2.31 16 12 C -0.11 -2.48 5.25 30.58 0.16 -2.32 16 13 C -0.10 -3.45 2.21 -10.75 -0.02 -3.47 16 14 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 15 C 0.16 6.10 5.86 86.28 0.51 6.61 16 16 N -0.62 -31.07 2.74 -698.96 -1.92 -32.99 16 17 C -0.25 -14.91 10.03 84.03 0.84 -14.07 16 18 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 19 C -0.03 -2.10 5.30 84.86 0.45 -1.65 16 20 N -0.96 -62.97 13.97 21.65 0.30 -62.67 16 21 Si 0.95 49.33 24.27 68.60 1.66 51.00 16 22 H -0.28 -14.24 6.61 99.48 0.66 -13.58 16 23 H -0.31 -15.90 7.11 99.48 0.71 -15.19 16 24 H -0.25 -12.36 6.45 99.48 0.64 -11.72 16 25 C 0.12 5.50 4.16 86.41 0.36 5.86 16 26 C -0.11 -4.54 3.82 30.66 0.12 -4.43 16 27 C 0.16 5.47 2.63 45.00 0.12 5.59 16 28 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 29 N -0.34 -7.62 8.52 -49.52 -0.42 -8.04 16 30 O 0.12 2.24 11.18 71.86 0.80 3.04 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.09 0.21 8.14 -2.38 -0.02 0.19 16 33 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.12 0.63 8.12 -2.39 -0.02 0.61 16 35 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.09 0.26 8.14 -2.38 -0.02 0.24 16 38 H 0.19 3.57 8.06 -2.91 -0.02 3.55 16 39 H 0.13 2.80 3.80 -42.31 -0.16 2.64 16 40 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 47 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 48 H 0.04 1.66 6.78 -2.39 -0.02 1.64 16 49 H 0.05 2.43 4.67 -2.39 -0.01 2.42 16 50 H 0.09 3.60 6.15 -2.39 -0.01 3.59 16 51 H 0.04 1.87 7.43 -2.39 -0.02 1.85 16 Total: -1.00 -76.59 384.47 4.56 -72.03 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.66 Total: 12.63 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 5.90 Total: 6.82 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -4.42 Total: -123.86 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.76 Total: -18.62 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 1.66 Total: 51.00 kcal Total: -76.59 4.56 -72.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021642251.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.955 kcal (2) G-P(sol) polarization free energy of solvation -76.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds