Wall clock time and date at job start Wed Apr 1 2020 05:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47243 * 2 1 4 4 C 1.50702 * 109.47378 * 120.00134 * 2 1 3 5 5 C 1.41256 * 126.70510 * 275.26399 * 4 2 1 6 6 C 1.36821 * 103.84777 * 180.09413 * 5 4 2 7 7 C 1.47517 * 126.94520 * 179.97438 * 6 5 4 8 8 O 1.21581 * 119.99909 * 6.96227 * 7 6 5 9 9 N 1.34774 * 119.99837 * 186.95484 * 7 6 5 10 10 C 1.47023 * 120.81882 * 6.35491 * 9 7 6 11 11 C 1.53139 * 109.11537 * 125.99359 * 10 9 7 12 12 C 1.53128 * 109.47680 * 53.95216 * 11 10 9 13 13 C 1.52854 * 109.34394 * 299.34875 * 12 11 10 14 14 H 1.09001 * 108.60022 * 302.88794 * 13 12 11 15 15 C 1.52767 * 110.20641 * 183.23673 * 13 12 11 16 16 N 1.46890 * 109.23957 * 292.69678 * 15 13 12 17 17 C 1.36935 * 120.77955 * 126.59968 * 16 15 13 18 18 H 1.07999 * 120.00615 * 207.64400 * 17 16 15 19 19 C 1.38815 * 119.99580 * 27.63447 * 17 16 15 20 20 N 1.31618 * 120.00177 * 17.05683 * 19 17 16 21 21 Si 1.86801 * 119.99942 * 197.05283 * 19 17 16 22 22 H 1.48504 * 109.47071 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47317 * 119.99910 * 21 19 17 24 24 H 1.48500 * 109.47079 * 240.00596 * 21 19 17 25 25 C 1.46976 * 118.44968 * 306.62072 * 16 15 13 26 26 C 1.53095 * 108.62380 * 54.31011 * 25 16 15 27 27 C 1.47305 * 120.84397 * 186.19334 * 9 7 6 28 28 H 1.09001 * 110.07178 * 355.80685 * 27 9 7 29 29 O 1.34643 * 106.11079 * 359.66770 * 6 5 4 30 30 N 1.20887 * 111.46597 * 0.22406 * 29 6 5 31 31 H 1.08996 * 109.46848 * 300.00019 * 1 2 3 32 32 H 1.09006 * 109.47085 * 59.99896 * 1 2 3 33 33 H 1.08995 * 109.46889 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.47393 * 240.00353 * 2 1 3 35 35 H 1.08992 * 109.47201 * 299.99848 * 3 2 1 36 36 H 1.08996 * 109.47214 * 60.00205 * 3 2 1 37 37 H 1.09004 * 109.47350 * 180.02562 * 3 2 1 38 38 H 1.08000 * 128.08042 * 359.97438 * 5 4 2 39 39 H 1.08999 * 109.59435 * 6.04835 * 10 9 7 40 40 H 1.09001 * 109.40623 * 245.83241 * 10 9 7 41 41 H 1.08997 * 109.47254 * 293.95046 * 11 10 9 42 42 H 1.08997 * 109.46931 * 173.95284 * 11 10 9 43 43 H 1.08994 * 109.49170 * 179.38615 * 12 11 10 44 44 H 1.09000 * 109.50968 * 59.32456 * 12 11 10 45 45 H 1.09002 * 109.51743 * 172.74855 * 15 13 12 46 46 H 1.08996 * 109.51759 * 52.64084 * 15 13 12 47 47 H 0.97001 * 120.00005 * 180.02562 * 20 19 17 48 48 H 1.08994 * 109.61507 * 174.05181 * 25 16 15 49 49 H 1.09001 * 109.61233 * 294.40025 * 25 16 15 50 50 H 1.09000 * 109.44993 * 64.69348 * 26 25 16 51 51 H 1.08995 * 109.45652 * 184.62705 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2159 -0.1492 2.5136 6 6 2.6842 -1.1932 3.2638 7 6 3.0465 -1.1653 4.6935 8 8 2.8214 -0.1726 5.3584 9 7 3.6268 -2.2404 5.2627 10 6 4.0333 -3.3958 4.4494 11 6 5.5119 -3.6972 4.7101 12 6 5.7408 -3.8670 6.2147 13 6 5.3626 -2.5722 6.9336 14 1 5.9521 -1.7568 6.5145 15 6 5.6590 -2.6922 8.4274 16 7 4.7526 -3.6830 9.0227 17 6 5.2433 -4.7312 9.7545 18 1 4.6904 -5.6572 9.8096 19 6 6.4518 -4.6035 10.4256 20 7 6.9596 -3.4093 10.6453 21 14 7.3573 -6.1266 11.0168 22 1 6.5819 -7.3381 10.6473 23 1 8.6976 -6.1841 10.3801 24 1 7.5123 -6.0687 12.4926 25 6 3.3065 -3.5233 8.8141 26 6 3.0376 -3.4228 7.3103 27 6 3.8729 -2.2858 6.7143 28 1 3.5926 -1.3367 7.1711 29 8 2.7411 -2.2528 2.4350 30 7 2.3769 -1.9621 1.3196 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4425 -0.0005 38 1 2.0316 0.8673 2.8286 39 1 3.8882 -3.1686 3.3933 40 1 3.4307 -4.2617 4.7237 41 1 6.1215 -2.8726 4.3407 42 1 5.7919 -4.6155 4.1941 43 1 6.7910 -4.0923 6.3996 44 1 5.1225 -4.6838 6.5870 45 1 5.5078 -1.7253 8.9075 46 1 6.6914 -3.0116 8.5693 47 1 7.8042 -3.3201 11.1139 48 1 2.7804 -4.3859 9.2230 49 1 2.9631 -2.6160 9.3112 50 1 3.3085 -4.3628 6.8296 51 1 1.9794 -3.2219 7.1434 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021681934.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:00 Heat of formation + Delta-G solvation = 47.651785 kcal Electronic energy + Delta-G solvation = -32064.092750 eV Core-core repulsion = 27967.312306 eV Total energy + Delta-G solvation = -4096.780444 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.22692 -40.39129 -38.18904 -36.95522 -35.63443 -32.95644 -32.75578 -32.61059 -31.75820 -30.27595 -29.45350 -27.63152 -25.66269 -25.58379 -24.38610 -23.61648 -22.41247 -22.08787 -21.67319 -21.07090 -19.50538 -18.03505 -17.96575 -17.46749 -16.86680 -16.52319 -16.05458 -15.11262 -15.03731 -14.93057 -14.68056 -14.40686 -14.18566 -13.91659 -13.68859 -13.55886 -13.42655 -13.07900 -12.88985 -12.61949 -12.56730 -12.40227 -12.26188 -11.99108 -11.92100 -11.73653 -11.59288 -11.23990 -11.11488 -10.95338 -10.77078 -10.64486 -10.50790 -10.35048 -10.27585 -10.08032 -10.06008 -9.96367 -9.87509 -9.67406 -9.46582 -8.54942 -8.37949 -6.70409 -5.81225 -3.23173 0.66970 1.82908 2.44072 2.92048 3.09845 3.35439 3.44024 3.45458 3.65515 4.10203 4.47421 4.49694 4.63563 4.68770 4.76953 4.89552 5.03993 5.12294 5.17375 5.18491 5.21658 5.35996 5.38713 5.40820 5.42750 5.45399 5.51486 5.54012 5.70306 5.71750 5.77946 5.79968 5.82272 5.86122 6.01952 6.08547 6.16988 6.28151 6.37728 6.41569 6.45592 6.65783 6.74635 6.81504 6.91176 7.00575 7.27753 7.36117 7.62209 7.77915 7.81478 8.03300 8.41844 9.18439 9.81623 10.38685 11.27453 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028547 B = 0.002444 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.600913 B =11453.080195 C =11691.713130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.017 4.017 3 C -0.147 4.147 4 C 0.020 3.980 5 C -0.154 4.154 6 C -0.071 4.071 7 C 0.597 3.403 8 O -0.518 6.518 9 N -0.589 5.589 10 C 0.097 3.903 11 C -0.133 4.133 12 C -0.105 4.105 13 C -0.114 4.114 14 H 0.058 0.942 15 C 0.177 3.823 16 N -0.588 5.588 17 C -0.249 4.249 18 H 0.066 0.934 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.147 3.853 26 C -0.142 4.142 27 C 0.155 3.845 28 H 0.098 0.902 29 O 0.114 5.886 30 N -0.352 5.352 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.181 0.819 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.021 0.979 46 H 0.094 0.906 47 H 0.253 0.747 48 H 0.058 0.942 49 H 0.021 0.979 50 H 0.068 0.932 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.127 5.615 -20.812 23.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.036 4.036 3 C -0.204 4.204 4 C -0.138 4.138 5 C -0.176 4.176 6 C -0.137 4.137 7 C 0.382 3.618 8 O -0.395 6.395 9 N -0.319 5.319 10 C -0.026 4.026 11 C -0.172 4.172 12 C -0.143 4.143 13 C -0.135 4.135 14 H 0.076 0.924 15 C 0.051 3.949 16 N -0.311 5.311 17 C -0.378 4.378 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.020 3.980 26 C -0.182 4.182 27 C 0.054 3.946 28 H 0.116 0.884 29 O 0.045 5.955 30 N -0.055 5.055 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.198 0.802 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.039 0.961 46 H 0.112 0.888 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.039 0.961 50 H 0.086 0.914 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.055 5.144 -21.194 23.614 hybrid contribution 0.503 -0.061 0.614 0.795 sum -8.553 5.082 -20.580 22.859 Atomic orbital electron populations 1.21837 0.93222 1.02519 1.02657 1.19553 0.96257 0.95503 0.92296 1.21863 1.01607 0.94179 1.02795 1.23578 1.02515 0.90424 0.97281 1.22777 1.01953 1.01422 0.91483 1.24422 1.06594 0.88206 0.94479 1.16705 0.78838 0.83785 0.82491 1.90857 1.55683 1.31872 1.61079 1.48544 1.57315 1.16311 1.09779 1.22119 0.96619 0.88690 0.95146 1.21964 0.94739 1.01638 0.98813 1.21473 1.02160 0.98744 0.91907 1.22060 0.93377 0.97134 1.00979 0.92356 1.20712 0.97120 0.91900 0.85182 1.44043 0.99015 1.29201 1.58827 1.19180 1.04492 0.91052 1.23108 0.91605 1.25025 1.00388 0.96168 0.97989 1.70031 1.20296 1.20567 1.43727 0.86267 0.79804 0.82868 0.78099 1.20274 1.21602 1.21790 1.20858 0.87154 0.98920 0.91065 1.22437 0.97829 0.98210 0.99710 1.21563 0.96400 1.00392 0.76242 0.88385 1.85118 1.62088 1.34287 1.13998 1.73696 1.14409 1.17007 1.00381 0.91999 0.91418 0.92315 0.89241 0.91409 0.91828 0.92120 0.80199 0.89159 0.90591 0.92109 0.90905 0.91825 0.90386 0.96129 0.88829 0.93656 0.92352 0.96123 0.91377 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.18 37.16 0.34 -0.60 16 2 C -0.02 -0.13 3.38 -91.77 -0.31 -0.44 16 3 C -0.15 -0.88 8.81 37.16 0.33 -0.55 16 4 C 0.02 0.21 6.20 -82.17 -0.51 -0.29 16 5 C -0.15 -1.73 10.14 -38.95 -0.39 -2.13 16 6 C -0.07 -0.93 6.91 -36.31 -0.25 -1.18 16 7 C 0.60 9.19 7.69 -12.48 -0.10 9.10 16 8 O -0.52 -9.38 16.38 5.29 0.09 -9.29 16 9 N -0.59 -8.80 2.66 -165.97 -0.44 -9.25 16 10 C 0.10 1.23 5.68 -3.68 -0.02 1.21 16 11 C -0.13 -1.74 6.08 -26.59 -0.16 -1.90 16 12 C -0.11 -1.73 4.86 -26.74 -0.13 -1.86 16 13 C -0.11 -2.08 2.45 -90.67 -0.22 -2.31 16 14 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 15 C 0.18 4.02 4.70 -3.95 -0.02 4.00 16 16 N -0.59 -13.86 2.64 -172.63 -0.46 -14.31 16 17 C -0.25 -6.48 9.60 -15.06 -0.14 -6.62 16 18 H 0.07 1.70 7.89 -52.49 -0.41 1.28 16 19 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 20 N -0.90 -25.41 11.17 55.49 0.62 -24.79 16 21 Si 0.90 21.09 29.59 -169.99 -5.03 16.06 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.15 2.95 6.51 -3.73 -0.02 2.93 16 26 C -0.14 -2.39 5.02 -26.60 -0.13 -2.52 16 27 C 0.15 2.65 2.66 -67.26 -0.18 2.47 16 28 H 0.10 1.86 7.06 -51.93 -0.37 1.49 16 29 O 0.11 1.44 7.93 15.55 0.12 1.56 16 30 N -0.35 -4.35 12.04 33.52 0.40 -3.95 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.37 7.49 -51.93 -0.39 -0.02 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.18 1.74 7.66 -52.49 -0.40 1.34 16 39 H 0.09 1.06 4.24 -52.63 -0.22 0.84 16 40 H 0.08 0.93 7.26 -51.93 -0.38 0.55 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.08 1.40 6.15 -51.93 -0.32 1.08 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.09 2.38 6.03 -51.93 -0.31 2.07 16 47 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 48 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.07 1.13 5.33 -51.93 -0.28 0.86 16 51 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 389.75 15.07 5.87 5.87 Total: -1.00 -29.44 389.75 -8.96 -38.40 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -8.12 Total: 0.40 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -2.01 Total: -0.71 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.13 Total: -52.29 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.21 Total: -7.73 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.44 -8.96 -38.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021681934.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.055 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds