Wall clock time and date at job start Wed Apr 1 2020 05:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47243 * 2 1 4 4 C 1.50702 * 109.47378 * 120.00134 * 2 1 3 5 5 C 1.41256 * 126.70510 * 275.26399 * 4 2 1 6 6 C 1.36821 * 103.84777 * 180.09413 * 5 4 2 7 7 C 1.47517 * 126.94520 * 179.97438 * 6 5 4 8 8 O 1.21581 * 119.99909 * 6.96227 * 7 6 5 9 9 N 1.34774 * 119.99837 * 186.95484 * 7 6 5 10 10 C 1.47023 * 120.81882 * 6.35491 * 9 7 6 11 11 C 1.53139 * 109.11537 * 125.99359 * 10 9 7 12 12 C 1.53128 * 109.47680 * 53.95216 * 11 10 9 13 13 C 1.52854 * 109.34394 * 299.34875 * 12 11 10 14 14 H 1.09001 * 108.60022 * 302.88794 * 13 12 11 15 15 C 1.52767 * 110.20641 * 183.23673 * 13 12 11 16 16 N 1.46890 * 109.23957 * 292.69678 * 15 13 12 17 17 C 1.36935 * 120.77955 * 126.59968 * 16 15 13 18 18 H 1.07999 * 120.00615 * 207.64400 * 17 16 15 19 19 C 1.38815 * 119.99580 * 27.63447 * 17 16 15 20 20 N 1.31618 * 120.00177 * 17.05683 * 19 17 16 21 21 Si 1.86801 * 119.99942 * 197.05283 * 19 17 16 22 22 H 1.48504 * 109.47071 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47317 * 119.99910 * 21 19 17 24 24 H 1.48500 * 109.47079 * 240.00596 * 21 19 17 25 25 C 1.46976 * 118.44968 * 306.62072 * 16 15 13 26 26 C 1.53095 * 108.62380 * 54.31011 * 25 16 15 27 27 C 1.47305 * 120.84397 * 186.19334 * 9 7 6 28 28 H 1.09001 * 110.07178 * 355.80685 * 27 9 7 29 29 O 1.34643 * 106.11079 * 359.66770 * 6 5 4 30 30 N 1.20887 * 111.46597 * 0.22406 * 29 6 5 31 31 H 1.08996 * 109.46848 * 300.00019 * 1 2 3 32 32 H 1.09006 * 109.47085 * 59.99896 * 1 2 3 33 33 H 1.08995 * 109.46889 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.47393 * 240.00353 * 2 1 3 35 35 H 1.08992 * 109.47201 * 299.99848 * 3 2 1 36 36 H 1.08996 * 109.47214 * 60.00205 * 3 2 1 37 37 H 1.09004 * 109.47350 * 180.02562 * 3 2 1 38 38 H 1.08000 * 128.08042 * 359.97438 * 5 4 2 39 39 H 1.08999 * 109.59435 * 6.04835 * 10 9 7 40 40 H 1.09001 * 109.40623 * 245.83241 * 10 9 7 41 41 H 1.08997 * 109.47254 * 293.95046 * 11 10 9 42 42 H 1.08997 * 109.46931 * 173.95284 * 11 10 9 43 43 H 1.08994 * 109.49170 * 179.38615 * 12 11 10 44 44 H 1.09000 * 109.50968 * 59.32456 * 12 11 10 45 45 H 1.09002 * 109.51743 * 172.74855 * 15 13 12 46 46 H 1.08996 * 109.51759 * 52.64084 * 15 13 12 47 47 H 0.97001 * 120.00005 * 180.02562 * 20 19 17 48 48 H 1.08994 * 109.61507 * 174.05181 * 25 16 15 49 49 H 1.09001 * 109.61233 * 294.40025 * 25 16 15 50 50 H 1.09000 * 109.44993 * 64.69348 * 26 25 16 51 51 H 1.08995 * 109.45652 * 184.62705 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2159 -0.1492 2.5136 6 6 2.6842 -1.1932 3.2638 7 6 3.0465 -1.1653 4.6935 8 8 2.8214 -0.1726 5.3584 9 7 3.6268 -2.2404 5.2627 10 6 4.0333 -3.3958 4.4494 11 6 5.5119 -3.6972 4.7101 12 6 5.7408 -3.8670 6.2147 13 6 5.3626 -2.5722 6.9336 14 1 5.9521 -1.7568 6.5145 15 6 5.6590 -2.6922 8.4274 16 7 4.7526 -3.6830 9.0227 17 6 5.2433 -4.7312 9.7545 18 1 4.6904 -5.6572 9.8096 19 6 6.4518 -4.6035 10.4256 20 7 6.9596 -3.4093 10.6453 21 14 7.3573 -6.1266 11.0168 22 1 6.5819 -7.3381 10.6473 23 1 8.6976 -6.1841 10.3801 24 1 7.5123 -6.0687 12.4926 25 6 3.3065 -3.5233 8.8141 26 6 3.0376 -3.4228 7.3103 27 6 3.8729 -2.2858 6.7143 28 1 3.5926 -1.3367 7.1711 29 8 2.7411 -2.2528 2.4350 30 7 2.3769 -1.9621 1.3196 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4425 -0.0005 38 1 2.0316 0.8673 2.8286 39 1 3.8882 -3.1686 3.3933 40 1 3.4307 -4.2617 4.7237 41 1 6.1215 -2.8726 4.3407 42 1 5.7919 -4.6155 4.1941 43 1 6.7910 -4.0923 6.3996 44 1 5.1225 -4.6838 6.5870 45 1 5.5078 -1.7253 8.9075 46 1 6.6914 -3.0116 8.5693 47 1 7.8042 -3.3201 11.1139 48 1 2.7804 -4.3859 9.2230 49 1 2.9631 -2.6160 9.3112 50 1 3.3085 -4.3628 6.8296 51 1 1.9794 -3.2219 7.1434 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021681934.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:59 Heat of formation + Delta-G solvation = 32.568274 kcal Electronic energy + Delta-G solvation = -32064.746820 eV Core-core repulsion = 27967.312306 eV Total energy + Delta-G solvation = -4097.434514 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.13961 -41.70554 -39.59790 -37.67467 -37.12731 -34.50161 -34.08332 -33.54634 -32.91233 -31.78715 -31.08759 -28.10653 -27.39066 -26.86377 -25.23318 -24.96771 -23.72189 -23.47645 -22.90055 -22.31780 -20.50616 -19.55744 -18.94314 -18.55305 -18.50109 -17.68217 -17.21914 -16.88226 -16.36636 -15.95909 -15.84828 -15.35870 -15.24561 -15.18563 -15.14652 -14.81456 -14.53310 -14.25388 -14.19420 -14.08512 -13.78048 -13.61800 -13.22359 -13.06076 -12.92735 -12.82622 -12.61165 -12.56750 -12.45039 -12.26298 -12.16441 -11.97349 -11.86799 -11.82363 -11.78568 -11.50453 -11.42710 -11.29159 -11.15184 -10.99531 -10.85294 -10.51293 -9.71760 -8.66895 -7.84491 -5.28944 -0.34099 0.97160 1.34589 1.48134 1.50908 1.60392 1.77424 1.99979 2.53564 2.89606 3.16358 3.31677 3.60342 3.66937 3.83088 3.84018 3.92504 3.96988 4.03873 4.08252 4.13296 4.19788 4.22636 4.38389 4.43820 4.46434 4.55172 4.68777 4.73626 4.78530 4.82683 4.87959 4.89146 4.92342 4.94968 4.98533 5.04849 5.08555 5.12201 5.14018 5.20743 5.31481 5.32676 5.35648 5.41439 5.50437 5.62039 5.68145 5.72693 6.16023 6.41393 6.69841 7.01857 7.17029 7.87136 8.40501 9.22651 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028547 B = 0.002444 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.600913 B =11453.080195 C =11691.713130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.018 4.018 3 C -0.145 4.145 4 C 0.028 3.972 5 C -0.143 4.143 6 C -0.086 4.086 7 C 0.600 3.400 8 O -0.552 6.552 9 N -0.587 5.587 10 C 0.097 3.903 11 C -0.124 4.124 12 C -0.098 4.098 13 C -0.105 4.105 14 H 0.057 0.943 15 C 0.188 3.812 16 N -0.601 5.601 17 C -0.250 4.250 18 H 0.071 0.929 19 C -0.050 4.050 20 N -0.937 5.937 21 Si 0.962 3.038 22 H -0.264 1.264 23 H -0.292 1.292 24 H -0.297 1.297 25 C 0.143 3.857 26 C -0.126 4.126 27 C 0.163 3.837 28 H 0.076 0.924 29 O 0.111 5.889 30 N -0.365 5.365 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.195 0.805 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.101 0.899 43 H 0.050 0.950 44 H 0.067 0.933 45 H -0.012 1.012 46 H 0.062 0.938 47 H 0.248 0.752 48 H 0.065 0.935 49 H 0.011 0.989 50 H 0.078 0.922 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.408 4.897 -23.788 26.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.037 4.037 3 C -0.203 4.203 4 C -0.131 4.131 5 C -0.165 4.165 6 C -0.151 4.151 7 C 0.386 3.614 8 O -0.431 6.431 9 N -0.317 5.317 10 C -0.025 4.025 11 C -0.162 4.162 12 C -0.136 4.136 13 C -0.126 4.126 14 H 0.075 0.925 15 C 0.061 3.939 16 N -0.324 5.324 17 C -0.380 4.380 18 H 0.088 0.912 19 C -0.245 4.245 20 N -0.583 5.583 21 Si 0.791 3.209 22 H -0.188 1.188 23 H -0.219 1.219 24 H -0.225 1.225 25 C 0.017 3.983 26 C -0.166 4.166 27 C 0.061 3.939 28 H 0.094 0.906 29 O 0.043 5.957 30 N -0.069 5.069 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.212 0.788 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.006 0.994 46 H 0.081 0.919 47 H 0.057 0.943 48 H 0.083 0.917 49 H 0.029 0.971 50 H 0.096 0.904 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.359 4.397 -24.200 26.689 hybrid contribution 0.832 0.230 1.506 1.736 sum -9.527 4.628 -22.694 25.044 Atomic orbital electron populations 1.21836 0.92293 1.02188 1.03686 1.19747 0.96932 0.96093 0.90955 1.21876 1.01272 0.93232 1.03903 1.24074 1.01182 0.89811 0.98003 1.23062 1.00306 1.01682 0.91483 1.24009 1.08339 0.89221 0.93576 1.16882 0.78128 0.83123 0.83284 1.90839 1.56987 1.33041 1.62230 1.48462 1.57305 1.17121 1.08844 1.22301 0.96409 0.88117 0.95625 1.21906 0.95101 1.03183 0.95976 1.21366 1.01020 0.96859 0.94344 1.21830 0.94530 0.98439 0.97755 0.92485 1.20435 0.95475 0.89958 0.88008 1.44240 1.00581 1.28779 1.58838 1.19493 1.04443 0.91744 1.22320 0.91179 1.25740 1.01414 0.98498 0.98879 1.70191 1.20474 1.22516 1.45152 0.85278 0.78454 0.80249 0.76898 1.18848 1.21857 1.22472 1.20986 0.85145 0.98688 0.93457 1.22239 0.98858 0.98461 0.97017 1.21209 0.95312 0.99457 0.77935 0.90566 1.85081 1.62593 1.34069 1.13995 1.73690 1.15073 1.17950 1.00166 0.92111 0.89314 0.93308 0.88761 0.89478 0.91636 0.92664 0.78810 0.87607 0.89318 0.91897 0.88109 0.93125 0.91447 0.99402 0.91922 0.94257 0.91700 0.97123 0.90384 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.18 71.98 0.66 -0.80 16 2 C -0.02 -0.22 3.38 -11.54 -0.04 -0.26 16 3 C -0.15 -1.33 8.81 71.98 0.63 -0.70 16 4 C 0.03 0.52 6.20 43.55 0.27 0.79 16 5 C -0.14 -2.94 10.14 22.68 0.23 -2.71 16 6 C -0.09 -2.11 6.91 24.39 0.17 -1.94 16 7 C 0.60 17.88 7.69 86.69 0.67 18.55 16 8 O -0.55 -19.92 16.38 -3.97 -0.07 -19.99 16 9 N -0.59 -16.83 2.66 -797.28 -2.12 -18.96 16 10 C 0.10 2.22 5.68 86.33 0.49 2.71 16 11 C -0.12 -2.93 6.08 30.68 0.19 -2.74 16 12 C -0.10 -3.17 4.86 30.59 0.15 -3.02 16 13 C -0.10 -3.88 2.45 -10.83 -0.03 -3.91 16 14 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 15 C 0.19 8.94 4.70 86.23 0.40 9.34 16 16 N -0.60 -28.99 2.64 -700.08 -1.85 -30.84 16 17 C -0.25 -13.16 9.60 84.03 0.81 -12.36 16 18 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 19 C -0.05 -2.74 4.92 84.86 0.42 -2.32 16 20 N -0.94 -54.86 11.17 21.65 0.24 -54.62 16 21 Si 0.96 44.00 29.59 68.60 2.03 46.03 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 25 C 0.14 5.77 6.51 86.32 0.56 6.34 16 26 C -0.13 -4.12 5.02 30.68 0.15 -3.96 16 27 C 0.16 5.56 2.66 44.98 0.12 5.68 16 28 H 0.08 2.97 7.06 -2.39 -0.02 2.95 16 29 O 0.11 2.55 7.93 65.82 0.52 3.07 16 30 N -0.36 -8.20 12.04 -48.87 -0.59 -8.79 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 32 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.06 0.58 7.49 -2.39 -0.02 0.57 16 37 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.19 3.35 7.66 -2.91 -0.02 3.33 16 39 H 0.11 2.19 4.24 -13.48 -0.06 2.13 16 40 H 0.09 1.86 7.26 -2.39 -0.02 1.85 16 41 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.07 2.33 6.15 -2.39 -0.01 2.31 16 45 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 46 H 0.06 3.37 6.03 -2.39 -0.01 3.35 16 47 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 48 H 0.06 2.50 7.94 -2.39 -0.02 2.48 16 49 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 50 H 0.08 2.43 5.33 -2.39 -0.01 2.42 16 51 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -65.50 389.75 4.90 -60.60 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.88 Total: 14.80 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 5.86 Total: 8.69 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -4.32 Total: -113.21 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: 0.46 Total: -16.92 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -65.50 4.90 -60.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021681934.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.166 kcal (2) G-P(sol) polarization free energy of solvation -65.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds