Wall clock time and date at job start Wed Apr 1 2020 05:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46762 * 2 1 4 4 C 1.50693 * 109.47192 * 120.00058 * 2 1 3 5 5 C 1.41266 * 126.70393 * 275.00249 * 4 2 1 6 6 C 1.36828 * 103.84660 * 179.97438 * 5 4 2 7 7 C 1.47504 * 126.94442 * 179.97438 * 6 5 4 8 8 O 1.21593 * 120.00196 * 353.24464 * 7 6 5 9 9 N 1.34780 * 120.00255 * 173.24711 * 7 6 5 10 10 C 1.47064 * 120.84316 * 4.75955 * 9 7 6 11 11 C 1.52661 * 109.30226 * 233.36840 * 10 9 7 12 12 C 1.53138 * 109.69244 * 306.25000 * 11 10 9 13 13 C 1.52823 * 109.26425 * 60.70949 * 12 11 10 14 14 H 1.08995 * 109.46730 * 57.99177 * 13 12 11 15 15 C 1.53031 * 110.51524 * 178.40749 * 13 12 11 16 16 N 1.47070 * 108.50053 * 175.22767 * 15 13 12 17 17 C 1.36939 * 120.46998 * 126.82820 * 16 15 13 18 18 H 1.08000 * 120.00125 * 215.67513 * 17 16 15 19 19 C 1.38807 * 120.00194 * 35.67784 * 17 16 15 20 20 N 1.31621 * 120.00276 * 356.38307 * 19 17 16 21 21 Si 1.86802 * 120.00226 * 176.38609 * 19 17 16 22 22 H 1.48497 * 109.47528 * 89.99866 * 21 19 17 23 23 H 1.48500 * 109.46961 * 210.00197 * 21 19 17 24 24 H 1.48506 * 109.46991 * 329.99698 * 21 19 17 25 25 C 1.46865 * 119.05962 * 306.80737 * 16 15 13 26 26 C 1.53313 * 109.10101 * 52.65286 * 25 16 15 27 27 C 1.46718 * 120.84615 * 185.03641 * 9 7 6 28 28 H 1.08996 * 109.53075 * 245.20729 * 27 9 7 29 29 O 1.34640 * 106.11177 * 359.97438 * 6 5 4 30 30 N 1.20892 * 111.46543 * 359.71140 * 29 6 5 31 31 H 1.08997 * 109.46994 * 60.00141 * 1 2 3 32 32 H 1.09000 * 109.47058 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47070 * 299.99881 * 1 2 3 34 34 H 1.08999 * 109.46927 * 240.00385 * 2 1 3 35 35 H 1.09004 * 109.47525 * 60.00309 * 3 2 1 36 36 H 1.09002 * 109.47270 * 180.02562 * 3 2 1 37 37 H 1.09002 * 109.47682 * 299.99860 * 3 2 1 38 38 H 1.08000 * 128.07879 * 359.97438 * 5 4 2 39 39 H 1.09005 * 109.53973 * 353.29425 * 10 9 7 40 40 H 1.08996 * 109.54066 * 113.54589 * 10 9 7 41 41 H 1.08997 * 109.52014 * 186.10950 * 11 10 9 42 42 H 1.08997 * 109.29579 * 66.24905 * 11 10 9 43 43 H 1.09000 * 109.50922 * 300.77200 * 12 11 10 44 44 H 1.08997 * 109.50877 * 180.64645 * 12 11 10 45 45 H 1.09001 * 109.50481 * 55.52964 * 15 13 12 46 46 H 1.09000 * 109.74529 * 295.07266 * 15 13 12 47 47 H 0.96995 * 120.00620 * 180.02562 * 20 19 17 48 48 H 1.09005 * 109.52902 * 292.76947 * 25 16 15 49 49 H 1.08996 * 109.59512 * 172.58146 * 25 16 15 50 50 H 1.09000 * 109.55457 * 186.05802 * 26 25 16 51 51 H 1.08996 * 109.55744 * 65.74228 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2207 -0.1478 2.5124 6 6 2.6841 -1.1931 3.2639 7 6 3.0484 -1.1647 4.6930 8 8 3.0659 -0.1085 5.2951 9 7 3.3618 -2.3095 5.3315 10 6 3.4480 -3.5820 4.5992 11 6 2.5589 -4.6183 5.2818 12 6 2.9245 -4.7147 6.7657 13 6 2.7003 -3.3565 7.4295 14 1 1.6612 -3.0551 7.2982 15 6 3.0200 -3.4309 8.9242 16 7 2.9013 -2.0804 9.4945 17 6 2.1080 -1.8556 10.5878 18 1 1.5594 -0.9295 10.6757 19 6 2.0090 -2.8179 11.5832 20 7 2.6205 -3.9750 11.4432 21 14 1.0079 -2.4709 13.1217 22 1 -0.3958 -2.9053 12.9073 23 1 1.5873 -3.2165 14.2679 24 1 1.0366 -1.0150 13.4130 25 6 3.6461 -0.9765 8.8751 26 6 3.3350 -0.9413 7.3743 27 6 3.6198 -2.3191 6.7758 28 1 4.6603 -2.5877 6.9583 29 8 2.7405 -2.2528 2.4353 30 7 2.3707 -1.9636 1.3213 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.1300 1.4426 -0.0005 37 1 1.6767 1.9564 -0.8900 38 1 2.0409 0.8699 2.8262 39 1 3.1124 -3.4352 3.5725 40 1 4.4796 -3.9339 4.6000 41 1 2.7025 -5.5897 4.8087 42 1 1.5156 -4.3182 5.1838 43 1 3.9719 -4.9998 6.8648 44 1 2.2958 -5.4635 7.2476 45 1 4.0367 -3.7993 9.0611 46 1 2.3168 -4.1013 9.4183 47 1 2.5511 -4.6477 12.1386 48 1 4.7152 -1.1305 9.0222 49 1 3.3477 -0.0328 9.3315 50 1 3.9642 -0.1954 6.8887 51 1 2.2854 -0.6885 7.2251 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021681936.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:07 Heat of formation + Delta-G solvation = 61.494060 kcal Electronic energy + Delta-G solvation = -32118.732521 eV Core-core repulsion = 28022.552323 eV Total energy + Delta-G solvation = -4096.180197 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.19032 -40.48432 -37.82417 -36.92897 -35.87220 -33.06263 -32.93991 -32.61892 -31.72377 -30.19660 -29.15738 -27.60360 -25.63603 -25.54607 -24.37922 -23.40465 -22.53048 -22.24664 -21.62982 -20.01538 -19.55109 -19.17430 -17.91511 -17.39476 -16.73204 -16.48412 -15.97804 -15.12928 -15.00813 -14.78867 -14.65678 -14.40576 -14.14672 -13.94823 -13.74835 -13.56649 -13.41612 -13.10371 -12.82050 -12.58739 -12.47626 -12.21682 -12.18300 -11.93788 -11.90866 -11.70879 -11.54149 -11.19879 -10.97162 -10.90338 -10.84629 -10.74931 -10.68628 -10.33754 -10.25677 -10.07297 -10.01645 -9.86182 -9.75916 -9.48296 -9.07887 -8.45760 -8.35155 -6.50770 -5.77310 -3.29786 0.71394 1.86643 2.46968 2.95839 3.12868 3.37932 3.44638 3.46876 3.67925 4.12616 4.49348 4.50539 4.66127 4.71090 4.79172 4.90392 5.03152 5.07314 5.16572 5.19877 5.23549 5.36905 5.41451 5.42975 5.45208 5.50331 5.54933 5.60124 5.72993 5.75802 5.79743 5.83046 5.85270 5.92811 5.99676 6.13557 6.26910 6.29060 6.38441 6.45814 6.58241 6.67229 6.80210 6.93633 6.99621 7.14543 7.34459 7.46585 7.78706 7.81261 7.87623 8.11812 8.55107 9.26652 9.85554 10.44977 11.28838 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.002647 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.771219 B =10574.212978 C =11186.992508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.017 4.017 3 C -0.147 4.147 4 C 0.021 3.979 5 C -0.154 4.154 6 C -0.073 4.073 7 C 0.597 3.403 8 O -0.503 6.503 9 N -0.589 5.589 10 C 0.094 3.906 11 C -0.132 4.132 12 C -0.112 4.112 13 C -0.122 4.122 14 H 0.066 0.934 15 C 0.179 3.821 16 N -0.595 5.595 17 C -0.251 4.251 18 H 0.063 0.937 19 C 0.008 3.992 20 N -0.906 5.906 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.141 3.859 26 C -0.126 4.126 27 C 0.157 3.843 28 H 0.071 0.929 29 O 0.110 5.890 30 N -0.354 5.354 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.181 0.819 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.017 0.983 46 H 0.102 0.898 47 H 0.254 0.746 48 H 0.016 0.984 49 H 0.056 0.944 50 H 0.083 0.917 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.104 3.500 -22.671 22.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.036 4.036 3 C -0.204 4.204 4 C -0.137 4.137 5 C -0.177 4.177 6 C -0.139 4.139 7 C 0.381 3.619 8 O -0.379 6.379 9 N -0.321 5.321 10 C -0.029 4.029 11 C -0.170 4.170 12 C -0.150 4.150 13 C -0.143 4.143 14 H 0.084 0.916 15 C 0.053 3.947 16 N -0.318 5.318 17 C -0.381 4.381 18 H 0.081 0.919 19 C -0.190 4.190 20 N -0.551 5.551 21 Si 0.732 3.268 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.014 3.986 26 C -0.165 4.165 27 C 0.056 3.944 28 H 0.089 0.911 29 O 0.043 5.957 30 N -0.058 5.058 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.198 0.802 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.035 0.965 46 H 0.120 0.880 47 H 0.064 0.936 48 H 0.034 0.966 49 H 0.075 0.925 50 H 0.101 0.899 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.169 2.918 -23.030 23.215 hybrid contribution -0.608 0.608 1.112 1.406 sum -0.440 3.526 -21.918 22.204 Atomic orbital electron populations 1.21840 0.93229 1.02528 1.02671 1.19548 0.96258 0.95493 0.92293 1.21863 1.01568 0.94192 1.02806 1.23568 1.02501 0.90357 0.97296 1.22778 1.02147 1.01355 0.91397 1.24695 1.06575 0.88001 0.94628 1.16839 0.78298 0.84775 0.81976 1.90919 1.53021 1.30631 1.63317 1.48309 1.66724 1.06850 1.10198 1.22131 1.00934 0.83676 0.96182 1.21826 0.99822 0.98274 0.97092 1.21494 1.01653 0.98263 0.93620 1.22333 0.99220 0.92787 0.99961 0.91596 1.20944 0.99862 0.88223 0.85704 1.44060 1.51814 1.03558 1.32345 1.19169 1.19984 1.03341 0.95598 0.91935 1.25312 0.98958 0.97190 0.97545 1.69876 1.45992 1.05588 1.33595 0.86294 0.79356 0.77887 0.83251 1.21475 1.21564 1.20396 1.21115 0.94223 0.92489 0.90767 1.22576 1.02800 0.94149 0.96953 1.21481 0.98995 0.98511 0.75419 0.91068 1.85074 1.62610 1.33982 1.14071 1.73680 1.14486 1.17033 1.00636 0.91436 0.92316 0.91977 0.89288 0.91800 0.92143 0.91436 0.80212 0.88546 0.90765 0.90810 0.91773 0.91976 0.91322 0.96517 0.87980 0.93553 0.96640 0.92540 0.89887 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.18 37.16 0.34 -0.66 16 2 C -0.02 -0.13 3.38 -91.77 -0.31 -0.44 16 3 C -0.15 -0.91 8.81 37.16 0.33 -0.58 16 4 C 0.02 0.23 6.20 -82.17 -0.51 -0.28 16 5 C -0.15 -1.78 10.13 -38.94 -0.39 -2.17 16 6 C -0.07 -0.97 6.99 -36.32 -0.25 -1.22 16 7 C 0.60 9.22 7.59 -12.48 -0.09 9.12 16 8 O -0.50 -8.93 12.58 5.28 0.07 -8.86 16 9 N -0.59 -8.84 2.98 -166.83 -0.50 -9.34 16 10 C 0.09 1.14 6.30 -3.91 -0.02 1.11 16 11 C -0.13 -1.61 6.05 -26.83 -0.16 -1.77 16 12 C -0.11 -1.67 5.25 -26.75 -0.14 -1.81 16 13 C -0.12 -2.26 2.21 -90.56 -0.20 -2.46 16 14 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 15 C 0.18 4.15 4.58 -3.72 -0.02 4.14 16 16 N -0.60 -14.97 3.01 -172.28 -0.52 -15.49 16 17 C -0.25 -6.91 9.53 -15.06 -0.14 -7.06 16 18 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 19 C 0.01 0.23 5.31 -17.43 -0.09 0.14 16 20 N -0.91 -25.73 10.66 55.49 0.59 -25.14 16 21 Si 0.90 21.65 29.55 -169.99 -5.02 16.63 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.14 3.07 6.50 -3.68 -0.02 3.05 16 26 C -0.13 -2.42 3.82 -26.63 -0.10 -2.52 16 27 C 0.16 2.73 2.63 -67.73 -0.18 2.55 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 O 0.11 1.39 7.77 15.56 0.12 1.51 16 30 N -0.35 -4.40 12.04 33.52 0.40 -4.00 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.39 7.48 -51.93 -0.39 0.00 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.18 1.80 7.65 -52.49 -0.40 1.40 16 39 H 0.10 1.10 3.86 -54.50 -0.21 0.89 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.10 2.68 5.98 -51.93 -0.31 2.37 16 47 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.06 1.23 7.93 -51.93 -0.41 0.81 16 50 H 0.08 1.57 6.13 -51.93 -0.32 1.25 16 51 H 0.06 1.34 7.44 -51.93 -0.39 0.95 16 LS Contribution 389.11 15.07 5.86 5.86 Total: -1.00 -30.13 389.11 -9.29 -39.42 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -8.32 Total: 0.29 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.98 Total: -0.88 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.02 Total: -53.97 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: 0.19 Total: -7.35 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.13 -9.29 -39.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021681936.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.915 kcal (2) G-P(sol) polarization free energy of solvation -30.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds