Wall clock time and date at job start Wed Apr 1 2020 05:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46762 * 2 1 4 4 C 1.50693 * 109.47192 * 120.00058 * 2 1 3 5 5 C 1.41266 * 126.70393 * 275.00249 * 4 2 1 6 6 C 1.36828 * 103.84660 * 179.97438 * 5 4 2 7 7 C 1.47504 * 126.94442 * 179.97438 * 6 5 4 8 8 O 1.21593 * 120.00196 * 353.24464 * 7 6 5 9 9 N 1.34780 * 120.00255 * 173.24711 * 7 6 5 10 10 C 1.47064 * 120.84316 * 4.75955 * 9 7 6 11 11 C 1.52661 * 109.30226 * 233.36840 * 10 9 7 12 12 C 1.53138 * 109.69244 * 306.25000 * 11 10 9 13 13 C 1.52823 * 109.26425 * 60.70949 * 12 11 10 14 14 H 1.08995 * 109.46730 * 57.99177 * 13 12 11 15 15 C 1.53031 * 110.51524 * 178.40749 * 13 12 11 16 16 N 1.47070 * 108.50053 * 175.22767 * 15 13 12 17 17 C 1.36939 * 120.46998 * 126.82820 * 16 15 13 18 18 H 1.08000 * 120.00125 * 215.67513 * 17 16 15 19 19 C 1.38807 * 120.00194 * 35.67784 * 17 16 15 20 20 N 1.31621 * 120.00276 * 356.38307 * 19 17 16 21 21 Si 1.86802 * 120.00226 * 176.38609 * 19 17 16 22 22 H 1.48497 * 109.47528 * 89.99866 * 21 19 17 23 23 H 1.48500 * 109.46961 * 210.00197 * 21 19 17 24 24 H 1.48506 * 109.46991 * 329.99698 * 21 19 17 25 25 C 1.46865 * 119.05962 * 306.80737 * 16 15 13 26 26 C 1.53313 * 109.10101 * 52.65286 * 25 16 15 27 27 C 1.46718 * 120.84615 * 185.03641 * 9 7 6 28 28 H 1.08996 * 109.53075 * 245.20729 * 27 9 7 29 29 O 1.34640 * 106.11177 * 359.97438 * 6 5 4 30 30 N 1.20892 * 111.46543 * 359.71140 * 29 6 5 31 31 H 1.08997 * 109.46994 * 60.00141 * 1 2 3 32 32 H 1.09000 * 109.47058 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47070 * 299.99881 * 1 2 3 34 34 H 1.08999 * 109.46927 * 240.00385 * 2 1 3 35 35 H 1.09004 * 109.47525 * 60.00309 * 3 2 1 36 36 H 1.09002 * 109.47270 * 180.02562 * 3 2 1 37 37 H 1.09002 * 109.47682 * 299.99860 * 3 2 1 38 38 H 1.08000 * 128.07879 * 359.97438 * 5 4 2 39 39 H 1.09005 * 109.53973 * 353.29425 * 10 9 7 40 40 H 1.08996 * 109.54066 * 113.54589 * 10 9 7 41 41 H 1.08997 * 109.52014 * 186.10950 * 11 10 9 42 42 H 1.08997 * 109.29579 * 66.24905 * 11 10 9 43 43 H 1.09000 * 109.50922 * 300.77200 * 12 11 10 44 44 H 1.08997 * 109.50877 * 180.64645 * 12 11 10 45 45 H 1.09001 * 109.50481 * 55.52964 * 15 13 12 46 46 H 1.09000 * 109.74529 * 295.07266 * 15 13 12 47 47 H 0.96995 * 120.00620 * 180.02562 * 20 19 17 48 48 H 1.09005 * 109.52902 * 292.76947 * 25 16 15 49 49 H 1.08996 * 109.59512 * 172.58146 * 25 16 15 50 50 H 1.09000 * 109.55457 * 186.05802 * 26 25 16 51 51 H 1.08996 * 109.55744 * 65.74228 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2207 -0.1478 2.5124 6 6 2.6841 -1.1931 3.2639 7 6 3.0484 -1.1647 4.6930 8 8 3.0659 -0.1085 5.2951 9 7 3.3618 -2.3095 5.3315 10 6 3.4480 -3.5820 4.5992 11 6 2.5589 -4.6183 5.2818 12 6 2.9245 -4.7147 6.7657 13 6 2.7003 -3.3565 7.4295 14 1 1.6612 -3.0551 7.2982 15 6 3.0200 -3.4309 8.9242 16 7 2.9013 -2.0804 9.4945 17 6 2.1080 -1.8556 10.5878 18 1 1.5594 -0.9295 10.6757 19 6 2.0090 -2.8179 11.5832 20 7 2.6205 -3.9750 11.4432 21 14 1.0079 -2.4709 13.1217 22 1 -0.3958 -2.9053 12.9073 23 1 1.5873 -3.2165 14.2679 24 1 1.0366 -1.0150 13.4130 25 6 3.6461 -0.9765 8.8751 26 6 3.3350 -0.9413 7.3743 27 6 3.6198 -2.3191 6.7758 28 1 4.6603 -2.5877 6.9583 29 8 2.7405 -2.2528 2.4353 30 7 2.3707 -1.9636 1.3213 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.1300 1.4426 -0.0005 37 1 1.6767 1.9564 -0.8900 38 1 2.0409 0.8699 2.8262 39 1 3.1124 -3.4352 3.5725 40 1 4.4796 -3.9339 4.6000 41 1 2.7025 -5.5897 4.8087 42 1 1.5156 -4.3182 5.1838 43 1 3.9719 -4.9998 6.8648 44 1 2.2958 -5.4635 7.2476 45 1 4.0367 -3.7993 9.0611 46 1 2.3168 -4.1013 9.4183 47 1 2.5511 -4.6477 12.1386 48 1 4.7152 -1.1305 9.0222 49 1 3.3477 -0.0328 9.3315 50 1 3.9642 -0.1954 6.8887 51 1 2.2854 -0.6885 7.2251 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021681936.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:06 Heat of formation + Delta-G solvation = 45.432132 kcal Electronic energy + Delta-G solvation = -32119.429018 eV Core-core repulsion = 28022.552323 eV Total energy + Delta-G solvation = -4096.876695 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -46.12080 -41.79556 -39.24534 -37.72843 -37.32611 -34.67245 -34.29088 -33.53680 -32.93837 -31.77885 -30.79737 -28.11144 -27.37048 -26.84520 -25.25831 -24.75745 -23.94828 -23.68902 -22.59320 -21.27625 -21.15369 -20.27363 -18.87849 -18.71018 -18.45457 -17.45637 -17.33909 -16.79114 -16.37099 -15.93883 -15.60875 -15.50062 -15.31823 -15.23338 -15.14019 -14.90330 -14.55759 -14.21264 -14.15144 -13.95292 -13.71057 -13.57738 -13.18842 -13.06438 -12.88530 -12.77641 -12.70859 -12.56806 -12.51846 -12.27247 -12.15159 -12.04998 -12.03811 -11.80410 -11.72716 -11.67441 -11.46506 -11.15540 -11.07326 -10.81044 -10.58247 -10.47024 -9.67606 -8.53058 -7.86367 -5.42954 -0.31109 0.98727 1.36787 1.45631 1.46922 1.56256 1.81439 2.02330 2.49106 2.89489 3.16933 3.27877 3.61474 3.66393 3.82800 3.87947 3.92724 3.99130 4.06022 4.09170 4.12758 4.21674 4.27682 4.37436 4.44108 4.47369 4.61869 4.71808 4.77507 4.82087 4.82691 4.86853 4.89796 4.92503 4.94941 4.95298 5.04255 5.08688 5.13849 5.19305 5.28280 5.30787 5.35668 5.39341 5.42549 5.55675 5.58900 5.65683 5.84416 6.18693 6.46500 6.77610 7.05544 7.18397 7.85016 8.38717 9.16606 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.002647 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.771219 B =10574.212978 C =11186.992508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.018 4.018 3 C -0.145 4.145 4 C 0.028 3.972 5 C -0.146 4.146 6 C -0.087 4.087 7 C 0.596 3.404 8 O -0.533 6.533 9 N -0.590 5.590 10 C 0.092 3.908 11 C -0.123 4.123 12 C -0.108 4.108 13 C -0.108 4.108 14 H 0.042 0.958 15 C 0.188 3.812 16 N -0.615 5.615 17 C -0.269 4.269 18 H 0.057 0.943 19 C -0.040 4.040 20 N -0.929 5.929 21 Si 0.967 3.033 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.273 1.273 25 C 0.139 3.861 26 C -0.107 4.107 27 C 0.165 3.835 28 H 0.078 0.922 29 O 0.108 5.892 30 N -0.366 5.366 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.193 0.807 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.002 0.998 46 H 0.069 0.931 47 H 0.252 0.748 48 H 0.019 0.981 49 H 0.050 0.950 50 H 0.090 0.910 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.012 3.677 -25.139 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.037 4.037 3 C -0.202 4.202 4 C -0.131 4.131 5 C -0.168 4.168 6 C -0.153 4.153 7 C 0.382 3.618 8 O -0.411 6.411 9 N -0.320 5.320 10 C -0.030 4.030 11 C -0.161 4.161 12 C -0.146 4.146 13 C -0.129 4.129 14 H 0.060 0.940 15 C 0.062 3.938 16 N -0.338 5.338 17 C -0.399 4.399 18 H 0.075 0.925 19 C -0.236 4.236 20 N -0.574 5.574 21 Si 0.794 3.206 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.198 1.198 25 C 0.013 3.987 26 C -0.146 4.146 27 C 0.063 3.937 28 H 0.095 0.905 29 O 0.042 5.958 30 N -0.072 5.072 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.211 0.789 39 H 0.126 0.874 40 H 0.114 0.886 41 H 0.126 0.874 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.020 0.980 46 H 0.087 0.913 47 H 0.061 0.939 48 H 0.037 0.963 49 H 0.068 0.932 50 H 0.109 0.891 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.057 3.083 -25.531 25.717 hybrid contribution -0.583 0.589 1.810 1.991 sum -0.527 3.672 -23.722 24.010 Atomic orbital electron populations 1.21840 0.92459 1.02145 1.03617 1.19738 0.96798 0.96137 0.91012 1.21873 1.01326 0.93197 1.03845 1.24060 1.01233 0.89781 0.98002 1.23051 1.00669 1.01594 0.91458 1.24263 1.08244 0.88999 0.93771 1.17014 0.77628 0.84329 0.82824 1.90885 1.54278 1.31567 1.64409 1.48267 1.66561 1.08107 1.09110 1.22372 1.02277 0.82100 0.96228 1.21786 0.99267 1.00107 0.94960 1.21461 1.02330 0.95493 0.95324 1.22046 0.97972 0.95679 0.97247 0.93954 1.20699 0.97886 0.86829 0.88377 1.44323 1.52172 1.04819 1.32533 1.19407 1.20513 1.03256 0.96729 0.92529 1.26006 1.00441 0.97022 1.00129 1.70051 1.47230 1.06080 1.34078 0.85296 0.77912 0.77824 0.79541 1.21067 1.21536 1.19758 1.21203 0.93930 0.91255 0.92304 1.22330 1.01424 0.95710 0.95111 1.21172 0.98799 0.96687 0.77075 0.90451 1.85040 1.63034 1.33708 1.14043 1.73671 1.15109 1.17921 1.00450 0.89287 0.93348 0.92292 0.88675 0.91755 0.92536 0.89486 0.78944 0.87372 0.88632 0.87384 0.92635 0.90879 0.91805 0.98009 0.91311 0.93855 0.96312 0.93165 0.89139 0.94014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.18 71.98 0.66 -0.97 16 2 C -0.02 -0.23 3.38 -11.54 -0.04 -0.27 16 3 C -0.14 -1.42 8.81 71.98 0.63 -0.78 16 4 C 0.03 0.54 6.20 43.55 0.27 0.81 16 5 C -0.15 -3.12 10.13 22.68 0.23 -2.89 16 6 C -0.09 -2.19 6.99 24.38 0.17 -2.02 16 7 C 0.60 17.98 7.59 86.69 0.66 18.64 16 8 O -0.53 -18.87 12.58 -4.01 -0.05 -18.92 16 9 N -0.59 -17.08 2.98 -800.00 -2.38 -19.46 16 10 C 0.09 2.00 6.30 86.16 0.54 2.55 16 11 C -0.12 -2.73 6.05 30.53 0.18 -2.54 16 12 C -0.11 -3.12 5.25 30.58 0.16 -2.96 16 13 C -0.11 -4.09 2.21 -10.75 -0.02 -4.11 16 14 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 15 C 0.19 9.06 4.58 86.28 0.40 9.45 16 16 N -0.62 -32.06 3.01 -698.96 -2.10 -34.16 16 17 C -0.27 -15.27 9.53 84.03 0.80 -14.47 16 18 H 0.06 3.21 7.83 -2.91 -0.02 3.18 16 19 C -0.04 -2.26 5.31 84.86 0.45 -1.81 16 20 N -0.93 -54.25 10.66 21.65 0.23 -54.02 16 21 Si 0.97 45.32 29.55 68.60 2.03 47.35 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 25 C 0.14 6.24 6.50 86.41 0.56 6.80 16 26 C -0.11 -4.18 3.82 30.66 0.12 -4.07 16 27 C 0.16 5.71 2.63 45.00 0.12 5.83 16 28 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 29 O 0.11 2.53 7.77 65.84 0.51 3.04 16 30 N -0.37 -8.40 12.04 -48.86 -0.59 -8.99 16 31 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 0.63 7.48 -2.38 -0.02 0.61 16 36 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.19 3.54 7.65 -2.91 -0.02 3.51 16 39 H 0.11 2.20 3.86 -43.20 -0.17 2.03 16 40 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 46 H 0.07 3.78 5.98 -2.39 -0.01 3.76 16 47 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 48 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 49 H 0.05 2.26 7.93 -2.39 -0.02 2.24 16 50 H 0.09 3.44 6.13 -2.39 -0.01 3.43 16 51 H 0.04 1.81 7.44 -2.39 -0.02 1.79 16 Total: -1.00 -67.02 389.11 4.30 -62.72 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.76 Total: 15.25 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 5.89 Total: 7.19 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -4.84 Total: -116.63 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.46 Total: -15.88 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -67.02 4.30 -62.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021681936.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.149 kcal (2) G-P(sol) polarization free energy of solvation -67.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds