Wall clock time and date at job start Wed Apr 1 2020 04:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47057 * 2 1 4 4 N 1.29936 * 125.37799 * 89.99670 * 3 2 1 5 5 C 1.36071 * 108.47838 * 179.97438 * 4 3 2 6 6 C 1.47412 * 126.44968 * 180.02562 * 5 4 3 7 7 O 1.21613 * 120.00013 * 186.35158 * 6 5 4 8 8 N 1.34773 * 120.00144 * 6.35421 * 6 5 4 9 9 C 1.46945 * 120.84653 * 6.73499 * 8 6 5 10 10 C 1.53609 * 108.77476 * 125.92987 * 9 8 6 11 11 C 1.53126 * 109.40304 * 54.30942 * 10 9 8 12 12 C 1.52857 * 109.34187 * 299.21485 * 11 10 9 13 13 H 1.09001 * 109.25118 * 302.49292 * 12 11 10 14 14 C 1.52774 * 109.56222 * 182.83564 * 12 11 10 15 15 N 1.46894 * 109.19106 * 293.08344 * 14 12 11 16 16 C 1.36938 * 120.77347 * 126.62621 * 15 14 12 17 17 H 1.07996 * 119.99685 * 219.53115 * 16 15 14 18 18 C 1.38808 * 119.99940 * 39.53813 * 16 15 14 19 19 N 1.31621 * 120.00222 * 7.69331 * 18 16 15 20 20 Si 1.86803 * 119.99765 * 187.69396 * 18 16 15 21 21 H 1.48502 * 109.47053 * 59.99940 * 20 18 16 22 22 H 1.48504 * 109.46849 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47029 * 299.99756 * 20 18 16 24 24 C 1.46974 * 118.44669 * 306.65084 * 15 14 12 25 25 C 1.51465 * 108.80120 * 53.89363 * 24 15 14 26 26 C 1.47313 * 120.84893 * 187.01160 * 8 6 5 27 27 H 1.09008 * 110.07330 * 355.09118 * 26 8 6 28 28 C 1.36097 * 107.10249 * 359.97438 * 5 4 3 29 29 C 1.50694 * 126.52655 * 179.97438 * 28 5 4 30 30 O 1.34051 * 125.38165 * 269.97223 * 3 2 1 31 31 H 1.09008 * 109.46694 * 59.99951 * 1 2 3 32 32 H 1.08994 * 109.46972 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47526 * 300.00592 * 1 2 3 34 34 H 1.08995 * 109.47564 * 239.99914 * 2 1 3 35 35 H 1.09002 * 109.46761 * 119.99595 * 2 1 3 36 36 H 1.08998 * 109.54158 * 245.84637 * 9 8 6 37 37 H 1.09003 * 109.54426 * 6.11354 * 9 8 6 38 38 H 1.09001 * 109.62028 * 294.26139 * 10 9 8 39 39 H 1.08997 * 109.39615 * 174.21863 * 10 9 8 40 40 H 1.09000 * 109.48962 * 179.25230 * 11 10 9 41 41 H 1.09000 * 109.51522 * 59.19297 * 11 10 9 42 42 H 1.09004 * 109.51880 * 52.99587 * 14 12 11 43 43 H 1.08997 * 109.51986 * 173.10879 * 14 12 11 44 44 H 0.97003 * 119.99734 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.61130 * 174.05363 * 24 15 14 46 46 H 1.09000 * 109.61177 * 294.39431 * 24 15 14 47 47 H 1.09000 * 109.65869 * 184.61375 * 25 24 15 48 48 H 1.09005 * 108.37279 * 65.21361 * 25 24 15 49 49 H 1.09000 * 109.47589 * 90.00261 * 29 28 5 50 50 H 1.08999 * 109.47035 * 210.00140 * 29 28 5 51 51 H 1.09005 * 109.47092 * 329.99996 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2831 2.1301 1.0594 5 6 2.7176 3.3574 0.6639 6 6 3.1124 4.4722 1.5438 7 8 3.3740 5.5600 1.0670 8 7 3.1837 4.2860 2.8767 9 6 3.0161 2.9479 3.4606 10 6 4.2304 2.6410 4.3499 11 6 4.4056 3.7634 5.3767 12 6 4.6471 5.0843 4.6465 13 1 5.5227 4.9854 4.0049 14 6 4.8927 6.1951 5.6663 15 7 3.6585 6.4347 6.4259 16 6 3.6616 6.4056 7.7950 17 1 2.8358 5.9574 8.3274 18 6 4.7261 6.9524 8.4984 19 7 5.6567 7.6311 7.8613 20 14 4.8379 6.7249 10.3491 21 1 4.9046 5.2757 10.6666 22 1 6.0593 7.3993 10.8578 23 1 3.6392 7.3183 10.9941 24 6 2.4202 6.7058 5.6822 25 6 2.1962 5.5893 4.6835 26 6 3.4255 5.4195 3.7860 27 1 3.6105 6.3272 3.2114 28 6 2.7202 3.3616 -0.6971 29 6 3.1252 4.5061 -1.5897 30 8 2.2916 2.1524 -1.0929 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.1059 2.9229 4.0596 37 1 2.9498 2.2078 2.6631 38 1 5.1266 2.5691 3.7337 39 1 4.0694 1.6959 4.8687 40 1 5.2589 3.5404 6.0172 41 1 3.5051 3.8437 5.9856 42 1 5.6876 5.8938 6.3486 43 1 5.1850 7.1079 5.1473 44 1 6.4007 8.0128 8.3529 45 1 1.5807 6.7566 6.3756 46 1 2.5128 7.6526 5.1501 47 1 1.3259 5.8171 4.0679 48 1 2.0188 4.6658 5.2347 49 1 4.1918 4.4398 -1.8042 50 1 2.5633 4.4560 -2.5223 51 1 2.9135 5.4506 -1.0882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021685150.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:27 Heat of formation + Delta-G solvation = -10.898013 kcal Electronic energy + Delta-G solvation = -32361.413535 eV Core-core repulsion = 28262.094181 eV Total energy + Delta-G solvation = -4099.319353 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.57191 -41.59558 -39.51073 -37.14952 -36.14948 -35.10190 -34.25534 -33.99770 -32.58082 -31.84073 -31.25072 -28.40240 -27.28729 -26.55109 -25.26265 -24.43303 -23.54645 -23.40736 -22.82518 -22.24740 -20.55921 -19.51028 -18.53944 -18.41215 -18.04057 -17.36378 -16.97746 -16.73727 -16.27697 -15.95418 -15.70908 -15.60007 -15.22645 -15.10807 -15.05484 -14.63837 -14.42775 -14.23274 -14.16406 -14.02980 -13.93143 -13.60948 -13.48099 -13.29038 -13.21325 -12.85348 -12.68614 -12.63636 -12.58405 -12.44956 -12.29718 -12.03854 -12.02879 -11.99148 -11.79120 -11.61471 -11.41996 -11.29576 -11.10480 -10.62393 -10.54043 -9.94415 -9.51840 -8.51416 -7.86714 -5.46991 -0.01342 0.89383 1.40122 1.47566 1.49212 1.55965 1.87457 2.13710 2.50271 2.77770 3.30190 3.44640 3.56735 3.63845 3.79724 3.92257 4.04773 4.07511 4.11068 4.21527 4.23671 4.26869 4.35981 4.37359 4.43653 4.51753 4.54396 4.58537 4.72975 4.74446 4.83872 4.87819 4.93497 4.95417 5.00447 5.02948 5.04261 5.08480 5.10975 5.13071 5.19507 5.25874 5.32099 5.36835 5.45786 5.57039 5.63616 5.67180 5.70216 6.30044 6.45451 6.50730 7.01047 7.17154 7.81057 8.42894 9.19081 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.002780 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.258656 B =10070.890099 C =10728.514695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.026 4.026 3 C 0.203 3.797 4 N -0.471 5.471 5 C -0.097 4.097 6 C 0.592 3.408 7 O -0.571 6.571 8 N -0.586 5.586 9 C 0.084 3.916 10 C -0.122 4.122 11 C -0.096 4.096 12 C -0.105 4.105 13 H 0.054 0.946 14 C 0.197 3.803 15 N -0.599 5.599 16 C -0.265 4.265 17 H 0.063 0.937 18 C -0.039 4.039 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.274 1.274 22 H -0.296 1.296 23 H -0.274 1.274 24 C 0.147 3.853 25 C -0.123 4.123 26 C 0.163 3.837 27 H 0.071 0.929 28 C 0.045 3.955 29 C -0.076 4.076 30 O -0.194 6.194 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.064 0.936 37 H 0.144 0.856 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.049 0.951 43 H -0.012 1.012 44 H 0.251 0.749 45 H 0.063 0.937 46 H 0.005 0.995 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.102 0.898 50 H 0.108 0.892 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.819 -18.860 -19.597 28.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.064 4.064 3 C -0.005 4.005 4 N -0.201 5.201 5 C -0.215 4.215 6 C 0.381 3.619 7 O -0.452 6.452 8 N -0.316 5.316 9 C -0.038 4.038 10 C -0.160 4.160 11 C -0.134 4.134 12 C -0.126 4.126 13 H 0.072 0.928 14 C 0.070 3.930 15 N -0.323 5.323 16 C -0.395 4.395 17 H 0.081 0.919 18 C -0.235 4.235 19 N -0.578 5.578 20 Si 0.795 3.205 21 H -0.199 1.199 22 H -0.222 1.222 23 H -0.200 1.200 24 C 0.021 3.979 25 C -0.162 4.162 26 C 0.061 3.939 27 H 0.089 0.911 28 C -0.012 4.012 29 C -0.132 4.132 30 O -0.081 6.081 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.069 0.931 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.083 0.917 37 H 0.161 0.839 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.006 0.994 44 H 0.060 0.940 45 H 0.082 0.918 46 H 0.023 0.977 47 H 0.083 0.917 48 H 0.090 0.910 49 H 0.121 0.879 50 H 0.126 0.874 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.628 -18.429 -19.151 27.943 hybrid contribution 0.662 1.033 0.676 1.401 sum -7.966 -17.395 -18.475 26.597 Atomic orbital electron populations 1.21789 0.92345 1.04351 1.02147 1.20460 0.97252 0.81310 1.07329 1.27365 0.97638 0.97870 0.77668 1.70451 1.17470 1.02486 1.29685 1.21294 1.12849 0.94638 0.92727 1.17139 0.77021 0.85913 0.81840 1.90731 1.52554 1.26658 1.75217 1.48267 1.68541 1.10141 1.04644 1.22791 0.97568 0.83530 0.99916 1.21981 0.98038 0.98868 0.97134 1.21360 1.01726 0.93092 0.97226 1.21815 0.96355 0.97711 0.96707 0.92796 1.20308 0.89278 0.92162 0.91251 1.44053 1.04330 1.82026 1.01851 1.19303 1.06385 1.31366 0.82437 0.91919 1.26139 0.98835 0.96498 1.02068 1.70136 1.13520 1.37763 1.36401 0.85364 0.76813 0.77940 0.80401 1.19916 1.22202 1.19997 1.20659 0.89787 0.94253 0.93225 1.21887 0.96400 1.00751 0.97197 1.21037 0.95274 0.88439 0.89190 0.91105 1.24059 0.96719 0.86284 0.94156 1.20682 1.03548 0.90825 0.98168 1.84352 1.63751 1.21939 1.38071 0.92560 0.88385 0.93124 0.86228 0.85984 0.91724 0.83901 0.92537 0.88755 0.93267 0.91910 0.93296 0.99367 0.94045 0.91833 0.97659 0.91686 0.91029 0.87927 0.87386 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.90 71.98 0.71 -0.39 16 2 C -0.03 -0.21 6.56 29.85 0.20 -0.02 16 3 C 0.20 3.66 7.56 88.39 0.67 4.33 16 4 N -0.47 -11.27 7.82 -293.04 -2.29 -13.56 16 5 C -0.10 -2.72 6.68 40.41 0.27 -2.45 16 6 C 0.59 20.29 7.68 86.66 0.67 20.96 16 7 O -0.57 -22.13 14.25 -4.07 -0.06 -22.19 16 8 N -0.59 -19.76 2.66 -796.90 -2.12 -21.87 16 9 C 0.08 2.36 5.67 86.50 0.49 2.85 16 10 C -0.12 -3.42 6.10 30.84 0.19 -3.23 16 11 C -0.10 -3.47 4.81 30.59 0.15 -3.32 16 12 C -0.10 -4.27 2.50 -10.87 -0.03 -4.30 16 13 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 14 C 0.20 9.90 4.58 86.23 0.40 10.29 16 15 N -0.60 -30.68 2.51 -703.15 -1.77 -32.45 16 16 C -0.26 -14.55 9.50 84.03 0.80 -13.76 16 17 H 0.06 3.35 7.84 -2.91 -0.02 3.33 16 18 C -0.04 -2.18 5.08 84.86 0.43 -1.75 16 19 N -0.93 -56.23 11.54 21.65 0.25 -55.98 16 20 Si 0.97 44.87 29.56 68.60 2.03 46.90 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 24 C 0.15 6.46 6.46 85.79 0.55 7.02 16 25 C -0.12 -4.57 4.90 30.14 0.15 -4.42 16 26 C 0.16 6.30 2.69 44.94 0.12 6.42 16 27 H 0.07 3.08 7.06 -2.38 -0.02 3.06 16 28 C 0.04 1.03 7.44 25.19 0.19 1.22 16 29 C -0.08 -1.37 9.95 71.23 0.71 -0.67 16 30 O -0.19 -3.80 10.73 0.37 0.00 -3.80 16 31 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 1.80 7.23 -2.39 -0.02 1.78 16 37 H 0.14 3.74 4.08 -20.72 -0.08 3.66 16 38 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.06 2.43 6.09 -2.39 -0.01 2.42 16 42 H 0.05 2.73 6.68 -2.38 -0.02 2.71 16 43 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 44 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 45 H 0.06 2.68 7.94 -2.39 -0.02 2.67 16 46 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 47 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.07 2.60 5.31 -2.38 -0.01 2.59 16 49 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.10 2.19 6.37 -2.38 -0.02 2.17 16 Total: -1.00 -70.99 389.34 3.56 -67.43 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.86 Total: 16.76 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 6.65 Total: 18.76 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -5.92 Total: -123.86 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.05 Total: -25.99 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -70.99 3.56 -67.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021685150.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.531 kcal (2) G-P(sol) polarization free energy of solvation -70.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds