Wall clock time and date at job start Wed Apr 1 2020 04:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50698 * 109.47152 * 2 1 4 4 N 1.30621 * 125.42203 * 89.97891 * 3 2 1 5 5 C 1.33690 * 108.99203 * 179.75256 * 4 3 2 6 6 C 1.50700 * 126.27313 * 180.26931 * 5 4 3 7 7 C 1.36339 * 107.45677 * 0.42117 * 5 4 3 8 8 C 1.46721 * 126.64657 * 179.84100 * 7 5 4 9 9 O 1.21683 * 120.00267 * 353.29063 * 8 7 5 10 10 N 1.34778 * 119.99872 * 173.28938 * 8 7 5 11 11 C 1.47065 * 120.84387 * 4.52828 * 10 8 7 12 12 C 1.53138 * 109.03742 * 233.45208 * 11 10 8 13 13 C 1.53140 * 109.61524 * 305.99050 * 12 11 10 14 14 C 1.52817 * 109.27564 * 60.85707 * 13 12 11 15 15 H 1.08998 * 109.49170 * 58.02899 * 14 13 12 16 16 C 1.53064 * 110.33586 * 178.58359 * 14 13 12 17 17 N 1.47067 * 108.33221 * 175.42457 * 16 14 13 18 18 C 1.36944 * 120.46425 * 126.71650 * 17 16 14 19 19 H 1.08003 * 119.99713 * 211.02664 * 18 17 16 20 20 C 1.38807 * 119.99858 * 31.01604 * 18 17 16 21 21 N 1.31619 * 120.00228 * 9.77105 * 20 18 17 22 22 Si 1.86804 * 119.99780 * 189.76592 * 20 18 17 23 23 H 1.48497 * 109.46753 * 90.00704 * 22 20 18 24 24 H 1.48503 * 109.47004 * 210.00268 * 22 20 18 25 25 H 1.48495 * 109.47346 * 330.00358 * 22 20 18 26 26 C 1.46856 * 119.07365 * 306.69628 * 17 16 14 27 27 C 1.53311 * 109.10504 * 52.63035 * 26 17 16 28 28 C 1.46707 * 120.84496 * 184.55100 * 10 8 7 29 29 H 1.09001 * 109.69650 * 245.29699 * 28 10 8 30 30 O 1.33659 * 125.42229 * 269.99396 * 3 2 1 31 31 H 1.08999 * 109.47281 * 300.00068 * 1 2 3 32 32 H 1.09006 * 109.47004 * 60.00257 * 1 2 3 33 33 H 1.09006 * 109.47565 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47105 * 239.99407 * 2 1 3 35 35 H 1.09006 * 109.47004 * 119.99743 * 2 1 3 36 36 H 1.08999 * 109.47287 * 270.18457 * 6 5 4 37 37 H 1.09008 * 109.47113 * 30.18700 * 6 5 4 38 38 H 1.09005 * 109.47330 * 150.18371 * 6 5 4 39 39 H 1.08994 * 109.54782 * 353.32017 * 11 10 8 40 40 H 1.09000 * 109.54305 * 113.58779 * 11 10 8 41 41 H 1.09001 * 109.43945 * 66.03395 * 12 11 10 42 42 H 1.08998 * 109.44894 * 185.96841 * 12 11 10 43 43 H 1.09002 * 109.50586 * 300.90892 * 13 12 11 44 44 H 1.09007 * 109.50088 * 180.79175 * 13 12 11 45 45 H 1.09000 * 109.69346 * 295.13692 * 16 14 13 46 46 H 1.09010 * 109.69378 * 55.68169 * 16 14 13 47 47 H 0.97003 * 120.00194 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.53746 * 172.52228 * 26 17 16 49 49 H 1.09006 * 109.53161 * 292.74459 * 26 17 16 50 50 H 1.09003 * 109.55768 * 65.74006 * 27 26 17 51 51 H 1.09003 * 109.56373 * 185.95244 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2843 2.1347 1.0644 5 6 2.7170 3.3418 0.6863 6 6 3.1235 4.4696 1.5995 7 6 2.7199 3.3667 -0.6768 8 6 3.1173 4.4913 -1.5313 9 8 3.3743 5.5719 -1.0344 10 7 3.1978 4.3274 -2.8667 11 6 2.7970 3.0602 -3.4963 12 6 3.9469 2.5508 -4.3700 13 6 4.3659 3.6441 -5.3570 14 6 4.8440 4.8697 -4.5793 15 1 5.6724 4.5877 -3.9295 16 6 5.3024 5.9662 -5.5438 17 7 5.6473 7.1598 -4.7569 18 6 6.8699 7.7591 -4.9043 19 1 7.3290 8.2625 -4.0662 20 6 7.5190 7.7193 -6.1305 21 7 6.8851 7.2792 -7.1968 22 14 9.2923 8.2905 -6.2676 23 1 10.2022 7.1416 -6.0288 24 1 9.5323 8.8379 -7.6270 25 1 9.5519 9.3462 -5.2559 26 6 4.6623 7.7004 -3.8113 27 6 4.1909 6.5768 -2.8808 28 6 3.6880 5.4083 -3.7290 29 1 2.8846 5.7509 -4.3812 30 8 2.2906 2.1511 -1.0892 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.2536 5.0869 1.8240 37 1 3.5271 4.0599 2.5255 38 1 3.8839 5.0778 1.1095 39 1 2.5721 2.3244 -2.7243 40 1 1.9142 3.2234 -4.1144 41 1 4.7948 2.2889 -3.7371 42 1 3.6204 1.6696 -4.9222 43 1 3.5144 3.9178 -5.9801 44 1 5.1750 3.2748 -5.9873 45 1 6.1773 5.6260 -6.0978 46 1 4.4971 6.2042 -6.2390 47 1 7.3387 7.2517 -8.0538 48 1 5.1208 8.4939 -3.2212 49 1 3.8101 8.0998 -4.3613 50 1 5.0223 6.2450 -2.2589 51 1 3.3839 6.9430 -2.2461 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021706166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:42 Heat of formation + Delta-G solvation = 22.408190 kcal Electronic energy + Delta-G solvation = -32490.709220 eV Core-core repulsion = 28392.834132 eV Total energy + Delta-G solvation = -4097.875088 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.64868 -40.38147 -37.80589 -36.09447 -35.32852 -34.55402 -32.88144 -32.68390 -30.97797 -30.19901 -29.31399 -27.80359 -25.61470 -25.50127 -24.37826 -22.78062 -22.56698 -21.66460 -21.53868 -20.42248 -19.58725 -19.31807 -17.16078 -17.08188 -16.70054 -16.27462 -15.96330 -15.13031 -15.00338 -14.71887 -14.64333 -14.30723 -14.04889 -13.91055 -13.49883 -13.38467 -13.24269 -13.19791 -13.00631 -12.73081 -12.49902 -12.46056 -12.20551 -12.10220 -12.08390 -11.67613 -11.50120 -11.15903 -11.11671 -10.96260 -10.88217 -10.80578 -10.67916 -10.53815 -10.24232 -10.06784 -10.01371 -9.81279 -9.46093 -9.03511 -8.93859 -8.46395 -8.30356 -6.57765 -5.76000 -3.23352 0.71745 2.16994 2.24959 3.00880 3.15324 3.38746 3.45180 3.46941 3.62569 4.37654 4.50574 4.53204 4.64492 4.67293 4.77718 4.95243 5.03249 5.10594 5.23237 5.30909 5.32979 5.36902 5.41788 5.43760 5.51267 5.58811 5.59875 5.66674 5.71571 5.73044 5.77756 5.86376 5.95137 6.05393 6.12127 6.21099 6.26107 6.31621 6.38511 6.43884 6.55959 6.64281 6.79350 6.93711 7.00697 7.15609 7.31623 7.40589 7.53702 7.69407 7.81800 8.15279 8.50746 9.25091 9.86670 10.43932 11.31732 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002907 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.144879 B = 9628.117868 C =10423.308732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.030 4.030 3 C 0.205 3.795 4 N -0.487 5.487 5 C 0.075 3.925 6 C -0.078 4.078 7 C -0.111 4.111 8 C 0.602 3.398 9 O -0.504 6.504 10 N -0.594 5.594 11 C 0.092 3.908 12 C -0.131 4.131 13 C -0.112 4.112 14 C -0.121 4.121 15 H 0.066 0.934 16 C 0.183 3.817 17 N -0.594 5.594 18 C -0.248 4.248 19 H 0.064 0.936 20 C 0.002 3.998 21 N -0.908 5.908 22 Si 0.904 3.096 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.140 3.860 27 C -0.124 4.124 28 C 0.158 3.842 29 H 0.069 0.931 30 O -0.181 6.181 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.019 0.981 47 H 0.253 0.747 48 H 0.056 0.944 49 H 0.015 0.985 50 H 0.063 0.937 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.051 -16.104 11.423 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.068 4.068 3 C 0.000 4.000 4 N -0.216 5.216 5 C -0.049 4.049 6 C -0.135 4.135 7 C -0.165 4.165 8 C 0.389 3.611 9 O -0.382 6.382 10 N -0.325 5.325 11 C -0.030 4.030 12 C -0.169 4.169 13 C -0.151 4.151 14 C -0.142 4.142 15 H 0.085 0.915 16 C 0.057 3.943 17 N -0.317 5.317 18 C -0.378 4.378 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.553 5.553 22 Si 0.734 3.266 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.204 1.204 26 C 0.014 3.986 27 C -0.164 4.164 28 C 0.057 3.943 29 H 0.087 0.913 30 O -0.069 6.069 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.112 0.888 46 H 0.037 0.963 47 H 0.063 0.937 48 H 0.075 0.925 49 H 0.033 0.967 50 H 0.082 0.918 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.922 -15.724 12.042 23.648 hybrid contribution 0.977 0.244 -0.974 1.401 sum -11.945 -15.481 11.068 22.468 Atomic orbital electron populations 1.21786 0.92798 1.03137 1.03138 1.20158 0.97057 0.84093 1.05479 1.26683 0.97056 0.96788 0.79501 1.70317 1.17569 1.03744 1.29989 1.22034 0.97553 0.93952 0.91317 1.20356 1.02798 0.93078 0.97286 1.23396 1.11823 0.85913 0.95364 1.16619 0.78194 0.84882 0.81416 1.90905 1.50603 1.22941 1.73733 1.48235 1.63048 1.15900 1.05293 1.22258 0.97540 0.85526 0.97708 1.21902 0.98118 0.98708 0.98172 1.21500 1.01162 0.95014 0.97382 1.22312 0.96503 0.96767 0.98628 0.91546 1.20804 0.99690 0.83673 0.90177 1.44094 1.13307 1.28294 1.45980 1.19225 0.93971 1.30636 0.93959 0.91794 1.25146 0.98902 1.00404 0.95137 1.69953 1.35528 1.50986 0.98803 0.86255 0.84854 0.78505 0.76952 1.21507 1.21700 1.20413 1.21112 0.92146 0.94078 0.91295 1.22570 1.01497 0.95118 0.97165 1.21427 0.95767 0.86113 0.91023 0.91274 1.84619 1.64052 1.22448 1.35790 0.91686 0.91988 0.90697 0.88570 0.87460 0.90050 0.90706 0.88664 0.88177 0.91244 0.91859 0.91069 0.92012 0.91405 0.88818 0.96303 0.93661 0.92525 0.96696 0.91795 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.89 37.15 0.37 -0.42 16 2 C -0.03 -0.18 6.56 -27.89 -0.18 -0.37 16 3 C 0.20 2.23 7.57 -12.79 -0.10 2.13 16 4 N -0.49 -6.32 11.26 -7.07 -0.08 -6.40 16 5 C 0.08 1.04 7.16 -82.47 -0.59 0.45 16 6 C -0.08 -0.94 9.81 36.01 0.35 -0.59 16 7 C -0.11 -1.60 6.89 -36.84 -0.25 -1.85 16 8 C 0.60 9.79 7.56 -12.83 -0.10 9.69 16 9 O -0.50 -9.05 10.53 5.20 0.05 -9.00 16 10 N -0.59 -9.28 2.97 -166.83 -0.50 -9.77 16 11 C 0.09 1.15 6.33 -3.66 -0.02 1.13 16 12 C -0.13 -1.63 6.07 -26.59 -0.16 -1.79 16 13 C -0.11 -1.71 5.24 -26.75 -0.14 -1.85 16 14 C -0.12 -2.28 2.21 -90.54 -0.20 -2.48 16 15 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 16 C 0.18 4.29 4.58 -3.70 -0.02 4.27 16 17 N -0.59 -15.09 3.00 -172.26 -0.52 -15.61 16 18 C -0.25 -6.89 9.57 -15.06 -0.14 -7.03 16 19 H 0.06 1.77 7.85 -52.48 -0.41 1.35 16 20 C 0.00 0.06 5.07 -17.43 -0.09 -0.03 16 21 N -0.91 -26.12 10.97 55.49 0.61 -25.52 16 22 Si 0.90 21.89 29.56 -169.99 -5.03 16.86 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.14 3.10 6.50 -3.69 -0.02 3.07 16 27 C -0.12 -2.43 3.82 -26.62 -0.10 -2.53 16 28 C 0.16 2.81 2.64 -67.73 -0.18 2.64 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 O -0.18 -2.22 7.27 4.42 0.03 -2.19 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.09 1.26 6.63 -51.93 -0.34 0.92 16 39 H 0.10 1.18 3.81 -54.89 -0.21 0.97 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 45 H 0.09 2.47 6.06 -51.93 -0.31 2.15 16 46 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 47 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 49 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.06 1.36 7.44 -51.93 -0.39 0.98 16 51 H 0.08 1.61 6.12 -51.93 -0.32 1.29 16 LS Contribution 388.77 15.07 5.86 5.86 Total: -1.00 -31.54 388.77 -9.44 -40.97 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -8.30 Total: 0.35 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -1.58 Total: 4.44 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.48 Total: -57.30 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.54 -9.44 -40.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021706166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.382 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds