Wall clock time and date at job start Wed Apr 1 2020 04:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50698 * 109.47152 * 2 1 4 4 N 1.30621 * 125.42203 * 89.97891 * 3 2 1 5 5 C 1.33690 * 108.99203 * 179.75256 * 4 3 2 6 6 C 1.50700 * 126.27313 * 180.26931 * 5 4 3 7 7 C 1.36339 * 107.45677 * 0.42117 * 5 4 3 8 8 C 1.46721 * 126.64657 * 179.84100 * 7 5 4 9 9 O 1.21683 * 120.00267 * 353.29063 * 8 7 5 10 10 N 1.34778 * 119.99872 * 173.28938 * 8 7 5 11 11 C 1.47065 * 120.84387 * 4.52828 * 10 8 7 12 12 C 1.53138 * 109.03742 * 233.45208 * 11 10 8 13 13 C 1.53140 * 109.61524 * 305.99050 * 12 11 10 14 14 C 1.52817 * 109.27564 * 60.85707 * 13 12 11 15 15 H 1.08998 * 109.49170 * 58.02899 * 14 13 12 16 16 C 1.53064 * 110.33586 * 178.58359 * 14 13 12 17 17 N 1.47067 * 108.33221 * 175.42457 * 16 14 13 18 18 C 1.36944 * 120.46425 * 126.71650 * 17 16 14 19 19 H 1.08003 * 119.99713 * 211.02664 * 18 17 16 20 20 C 1.38807 * 119.99858 * 31.01604 * 18 17 16 21 21 N 1.31619 * 120.00228 * 9.77105 * 20 18 17 22 22 Si 1.86804 * 119.99780 * 189.76592 * 20 18 17 23 23 H 1.48497 * 109.46753 * 90.00704 * 22 20 18 24 24 H 1.48503 * 109.47004 * 210.00268 * 22 20 18 25 25 H 1.48495 * 109.47346 * 330.00358 * 22 20 18 26 26 C 1.46856 * 119.07365 * 306.69628 * 17 16 14 27 27 C 1.53311 * 109.10504 * 52.63035 * 26 17 16 28 28 C 1.46707 * 120.84496 * 184.55100 * 10 8 7 29 29 H 1.09001 * 109.69650 * 245.29699 * 28 10 8 30 30 O 1.33659 * 125.42229 * 269.99396 * 3 2 1 31 31 H 1.08999 * 109.47281 * 300.00068 * 1 2 3 32 32 H 1.09006 * 109.47004 * 60.00257 * 1 2 3 33 33 H 1.09006 * 109.47565 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47105 * 239.99407 * 2 1 3 35 35 H 1.09006 * 109.47004 * 119.99743 * 2 1 3 36 36 H 1.08999 * 109.47287 * 270.18457 * 6 5 4 37 37 H 1.09008 * 109.47113 * 30.18700 * 6 5 4 38 38 H 1.09005 * 109.47330 * 150.18371 * 6 5 4 39 39 H 1.08994 * 109.54782 * 353.32017 * 11 10 8 40 40 H 1.09000 * 109.54305 * 113.58779 * 11 10 8 41 41 H 1.09001 * 109.43945 * 66.03395 * 12 11 10 42 42 H 1.08998 * 109.44894 * 185.96841 * 12 11 10 43 43 H 1.09002 * 109.50586 * 300.90892 * 13 12 11 44 44 H 1.09007 * 109.50088 * 180.79175 * 13 12 11 45 45 H 1.09000 * 109.69346 * 295.13692 * 16 14 13 46 46 H 1.09010 * 109.69378 * 55.68169 * 16 14 13 47 47 H 0.97003 * 120.00194 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.53746 * 172.52228 * 26 17 16 49 49 H 1.09006 * 109.53161 * 292.74459 * 26 17 16 50 50 H 1.09003 * 109.55768 * 65.74006 * 27 26 17 51 51 H 1.09003 * 109.56373 * 185.95244 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2843 2.1347 1.0644 5 6 2.7170 3.3418 0.6863 6 6 3.1235 4.4696 1.5995 7 6 2.7199 3.3667 -0.6768 8 6 3.1173 4.4913 -1.5313 9 8 3.3743 5.5719 -1.0344 10 7 3.1978 4.3274 -2.8667 11 6 2.7970 3.0602 -3.4963 12 6 3.9469 2.5508 -4.3700 13 6 4.3659 3.6441 -5.3570 14 6 4.8440 4.8697 -4.5793 15 1 5.6724 4.5877 -3.9295 16 6 5.3024 5.9662 -5.5438 17 7 5.6473 7.1598 -4.7569 18 6 6.8699 7.7591 -4.9043 19 1 7.3290 8.2625 -4.0662 20 6 7.5190 7.7193 -6.1305 21 7 6.8851 7.2792 -7.1968 22 14 9.2923 8.2905 -6.2676 23 1 10.2022 7.1416 -6.0288 24 1 9.5323 8.8379 -7.6270 25 1 9.5519 9.3462 -5.2559 26 6 4.6623 7.7004 -3.8113 27 6 4.1909 6.5768 -2.8808 28 6 3.6880 5.4083 -3.7290 29 1 2.8846 5.7509 -4.3812 30 8 2.2906 2.1511 -1.0892 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.2536 5.0869 1.8240 37 1 3.5271 4.0599 2.5255 38 1 3.8839 5.0778 1.1095 39 1 2.5721 2.3244 -2.7243 40 1 1.9142 3.2234 -4.1144 41 1 4.7948 2.2889 -3.7371 42 1 3.6204 1.6696 -4.9222 43 1 3.5144 3.9178 -5.9801 44 1 5.1750 3.2748 -5.9873 45 1 6.1773 5.6260 -6.0978 46 1 4.4971 6.2042 -6.2390 47 1 7.3387 7.2517 -8.0538 48 1 5.1208 8.4939 -3.2212 49 1 3.8101 8.0998 -4.3613 50 1 5.0223 6.2450 -2.2589 51 1 3.3839 6.9430 -2.2461 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021706166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:41 Heat of formation + Delta-G solvation = 2.477779 kcal Electronic energy + Delta-G solvation = -32491.573467 eV Core-core repulsion = 28392.834132 eV Total energy + Delta-G solvation = -4098.739335 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.60696 -41.71357 -39.23578 -37.56058 -36.41749 -35.21491 -34.49943 -34.19373 -32.20979 -31.60714 -30.90343 -28.92519 -27.32334 -26.57391 -25.42588 -24.36769 -23.98797 -22.79497 -22.46278 -21.61825 -21.15516 -20.72132 -18.72835 -18.22196 -18.11730 -17.32131 -17.20944 -16.78876 -16.32497 -15.77852 -15.63159 -15.56492 -15.47269 -15.20128 -15.00523 -14.74612 -14.39095 -14.25615 -14.15219 -13.94898 -13.77564 -13.60527 -13.53086 -13.32290 -13.12046 -12.80810 -12.75425 -12.60805 -12.53372 -12.27829 -12.14424 -12.10920 -12.06864 -12.02905 -11.84988 -11.68617 -11.65912 -11.38721 -11.07216 -10.62351 -10.41732 -10.01149 -9.58859 -8.62683 -7.87747 -5.39134 -0.30213 1.18385 1.28769 1.44960 1.45244 1.54855 1.84083 1.99026 2.48617 2.80699 3.25692 3.35988 3.59686 3.61082 3.78800 3.84586 3.91822 4.00824 4.11468 4.16956 4.23049 4.24216 4.29664 4.37574 4.43350 4.58556 4.60329 4.64644 4.67474 4.74047 4.79025 4.81800 4.83809 4.89897 4.98039 5.00840 5.02603 5.04340 5.11557 5.16783 5.23548 5.27280 5.35065 5.37159 5.40390 5.51290 5.57028 5.64035 5.76211 6.20347 6.40521 6.50041 6.90880 7.14655 7.83053 8.35304 9.17094 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002907 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.144879 B = 9628.117868 C =10423.308732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.031 4.031 3 C 0.224 3.776 4 N -0.510 5.510 5 C 0.074 3.926 6 C -0.076 4.076 7 C -0.134 4.134 8 C 0.599 3.401 9 O -0.532 6.532 10 N -0.595 5.595 11 C 0.089 3.911 12 C -0.121 4.121 13 C -0.109 4.109 14 C -0.107 4.107 15 H 0.042 0.958 16 C 0.193 3.807 17 N -0.614 5.614 18 C -0.266 4.266 19 H 0.058 0.942 20 C -0.046 4.046 21 N -0.932 5.932 22 Si 0.968 3.032 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.272 1.272 26 C 0.139 3.861 27 C -0.105 4.105 28 C 0.166 3.834 29 H 0.073 0.927 30 O -0.179 6.179 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.053 0.947 42 H 0.109 0.891 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.003 0.997 47 H 0.252 0.748 48 H 0.050 0.950 49 H 0.017 0.983 50 H 0.041 0.959 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.344 -18.902 12.036 26.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.069 4.069 3 C 0.019 3.981 4 N -0.240 5.240 5 C -0.050 4.050 6 C -0.133 4.133 7 C -0.188 4.188 8 C 0.387 3.613 9 O -0.412 6.412 10 N -0.326 5.326 11 C -0.031 4.031 12 C -0.159 4.159 13 C -0.147 4.147 14 C -0.129 4.129 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.337 5.337 18 C -0.396 4.396 19 H 0.076 0.924 20 C -0.241 4.241 21 N -0.578 5.578 22 Si 0.796 3.204 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.197 1.197 26 C 0.013 3.987 27 C -0.144 4.144 28 C 0.064 3.936 29 H 0.091 0.909 30 O -0.068 6.068 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.127 0.873 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.021 0.979 47 H 0.061 0.939 48 H 0.068 0.932 49 H 0.035 0.965 50 H 0.060 0.940 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.239 -18.550 12.675 26.599 hybrid contribution 1.314 1.045 -1.094 2.004 sum -12.925 -17.505 11.581 24.650 Atomic orbital electron populations 1.21785 0.91849 1.04594 1.02294 1.20556 0.97618 0.81197 1.07494 1.27791 0.94038 0.97743 0.78558 1.70381 1.19027 1.03654 1.30889 1.22331 0.96604 0.94601 0.91442 1.20357 1.02718 0.92766 0.97485 1.22874 1.14345 0.86535 0.95083 1.16807 0.77733 0.85216 0.81559 1.90868 1.51818 1.24259 1.74227 1.48205 1.62917 1.16397 1.05080 1.22512 0.98133 0.84260 0.98225 1.21855 0.97796 0.98761 0.97464 1.21472 1.01369 0.94114 0.97728 1.22032 0.96237 0.96921 0.97670 0.93941 1.20582 0.97689 0.84427 0.90618 1.44365 1.13429 1.29277 1.46631 1.19471 0.95232 1.30855 0.94043 0.92384 1.25862 1.02657 1.00827 0.94772 1.70107 1.36874 1.51833 0.99009 0.85259 0.80203 0.78111 0.76814 1.21125 1.21599 1.19709 1.21201 0.91480 0.94978 0.91061 1.22312 1.00712 0.95043 0.96292 1.21113 0.95346 0.86276 0.90887 0.90873 1.84569 1.64233 1.21762 1.36204 0.92983 0.92400 0.88105 0.85962 0.86003 0.89203 0.89220 0.90255 0.86811 0.89343 0.92791 0.87268 0.90987 0.91742 0.92064 0.97864 0.93918 0.93155 0.96493 0.93988 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 71.98 0.71 -0.32 16 2 C -0.03 -0.26 6.56 29.85 0.20 -0.07 16 3 C 0.22 4.26 7.57 88.29 0.67 4.93 16 4 N -0.51 -12.35 11.26 -291.07 -3.28 -15.62 16 5 C 0.07 1.99 7.16 41.83 0.30 2.28 16 6 C -0.08 -1.82 9.81 71.24 0.70 -1.12 16 7 C -0.13 -3.73 6.89 24.04 0.17 -3.57 16 8 C 0.60 19.30 7.56 86.46 0.65 19.96 16 9 O -0.53 -19.47 10.53 -4.29 -0.05 -19.52 16 10 N -0.60 -18.08 2.97 -799.96 -2.38 -20.46 16 11 C 0.09 2.00 6.33 86.32 0.55 2.55 16 12 C -0.12 -2.67 6.07 30.69 0.19 -2.48 16 13 C -0.11 -3.18 5.24 30.58 0.16 -3.02 16 14 C -0.11 -4.13 2.21 -10.74 -0.02 -4.16 16 15 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 16 C 0.19 9.39 4.58 86.29 0.39 9.79 16 17 N -0.61 -32.41 3.00 -698.91 -2.09 -34.51 16 18 C -0.27 -15.26 9.57 84.03 0.80 -14.46 16 19 H 0.06 3.32 7.85 -2.91 -0.02 3.30 16 20 C -0.05 -2.60 5.07 84.86 0.43 -2.17 16 21 N -0.93 -55.15 10.97 21.65 0.24 -54.91 16 22 Si 0.97 45.85 29.56 68.60 2.03 47.88 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 26 C 0.14 6.35 6.50 86.42 0.56 6.91 16 27 C -0.10 -4.21 3.82 30.66 0.12 -4.09 16 28 C 0.17 5.94 2.64 45.01 0.12 6.06 16 29 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 30 O -0.18 -3.96 7.27 -7.10 -0.05 -4.01 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.10 0.23 8.14 -2.38 -0.02 0.21 16 34 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.12 0.76 8.14 -2.38 -0.02 0.75 16 36 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.08 2.16 6.63 -2.38 -0.02 2.14 16 39 H 0.11 2.31 3.81 -49.21 -0.19 2.12 16 40 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 45 H 0.06 3.37 6.06 -2.39 -0.01 3.36 16 46 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 47 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 48 H 0.05 2.30 7.93 -2.39 -0.02 2.29 16 49 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 50 H 0.04 1.86 7.44 -2.39 -0.02 1.84 16 51 H 0.09 3.54 6.12 -2.39 -0.01 3.53 16 Total: -1.00 -71.15 388.77 1.86 -69.29 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.75 Total: 14.84 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 6.69 Total: 17.02 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -7.51 Total: -125.49 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.10 Total: -23.53 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -71.15 1.86 -69.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021706166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.769 kcal (2) G-P(sol) polarization free energy of solvation -71.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds