Wall clock time and date at job start Wed Apr 1 2020 04:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47312 * 2 1 4 4 N 1.30619 * 125.42675 * 89.97755 * 3 2 1 5 5 C 1.33689 * 108.99806 * 179.97438 * 4 3 2 6 6 C 1.50702 * 126.27286 * 179.97438 * 5 4 3 7 7 C 1.36334 * 107.45356 * 359.97438 * 5 4 3 8 8 C 1.46722 * 126.64374 * 179.97438 * 7 5 4 9 9 O 1.21686 * 120.00241 * 6.90234 * 8 7 5 10 10 N 1.34777 * 120.00337 * 186.90572 * 8 7 5 11 11 C 1.46944 * 120.84854 * 186.08732 * 10 8 7 12 12 C 1.53134 * 109.02923 * 233.99170 * 11 10 8 13 13 C 1.53117 * 109.47950 * 305.92704 * 12 11 10 14 14 C 1.52852 * 109.34236 * 60.65156 * 13 12 11 15 15 H 1.09005 * 109.24878 * 56.70423 * 14 13 12 16 16 C 1.52764 * 110.21649 * 176.75293 * 14 13 12 17 17 N 1.46892 * 109.19133 * 66.55493 * 16 14 13 18 18 C 1.36940 * 120.76869 * 233.35657 * 17 16 14 19 19 H 1.08003 * 120.00268 * 151.51773 * 18 17 16 20 20 C 1.38816 * 120.00121 * 331.51226 * 18 17 16 21 21 N 1.31613 * 120.00052 * 163.75995 * 20 18 17 22 22 Si 1.86796 * 119.99855 * 343.75971 * 20 18 17 23 23 H 1.48503 * 109.47381 * 95.19705 * 22 20 18 24 24 H 1.48501 * 109.47333 * 215.20091 * 22 20 18 25 25 H 1.48502 * 109.47136 * 335.20068 * 22 20 18 26 26 C 1.46970 * 118.45982 * 53.33169 * 17 16 14 27 27 C 1.53091 * 108.62106 * 305.69172 * 26 17 16 28 28 C 1.47235 * 121.49564 * 5.54761 * 10 8 7 29 29 H 1.08998 * 110.00711 * 4.17924 * 28 10 8 30 30 O 1.33669 * 125.42750 * 270.26403 * 3 2 1 31 31 H 1.08996 * 109.46691 * 300.00237 * 1 2 3 32 32 H 1.09002 * 109.47022 * 59.99616 * 1 2 3 33 33 H 1.08995 * 109.47196 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47061 * 239.99713 * 2 1 3 35 35 H 1.09002 * 109.47022 * 120.00384 * 2 1 3 36 36 H 1.08998 * 109.47007 * 270.02872 * 6 5 4 37 37 H 1.09009 * 109.47080 * 30.02352 * 6 5 4 38 38 H 1.08990 * 109.47565 * 150.02496 * 6 5 4 39 39 H 1.09002 * 109.54672 * 114.12125 * 11 10 8 40 40 H 1.09004 * 109.61819 * 353.90148 * 11 10 8 41 41 H 1.09005 * 109.46619 * 185.92903 * 12 11 10 42 42 H 1.08997 * 109.47377 * 65.93226 * 12 11 10 43 43 H 1.09005 * 109.49346 * 300.69627 * 13 12 11 44 44 H 1.08996 * 109.49211 * 180.61744 * 13 12 11 45 45 H 1.08999 * 109.51884 * 306.64398 * 16 14 13 46 46 H 1.08997 * 109.56830 * 186.49331 * 16 14 13 47 47 H 0.96998 * 119.99848 * 179.97438 * 21 20 18 48 48 H 1.09003 * 109.61226 * 185.95387 * 26 17 16 49 49 H 1.09000 * 109.75665 * 65.51916 * 26 17 16 50 50 H 1.08997 * 109.45741 * 175.37812 * 27 26 17 51 51 H 1.09002 * 109.45772 * 295.31647 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2844 2.1347 1.0644 5 6 2.7125 3.3434 0.6863 6 6 3.1115 4.4739 1.5995 7 6 2.7221 3.3659 -0.6769 8 6 3.1203 4.4902 -1.5314 9 8 3.6070 5.4890 -1.0352 10 7 2.9471 4.4168 -2.8659 11 6 3.4586 5.4721 -3.7513 12 6 2.3133 5.9874 -4.6275 13 6 1.6583 4.8106 -5.3559 14 6 1.0957 3.8289 -4.3282 15 1 0.3970 4.3527 -3.6759 16 6 0.3667 2.6865 -5.0334 17 7 1.3398 1.8857 -5.7880 18 6 1.1547 1.6317 -7.1208 19 1 2.0077 1.4714 -7.7636 20 6 -0.1293 1.5801 -7.6458 21 7 -0.3119 1.6573 -8.9469 22 14 -1.5980 1.4011 -6.5056 23 1 -2.1600 2.7430 -6.2078 24 1 -2.6350 0.5646 -7.1615 25 1 -1.1667 0.7534 -5.2408 26 6 2.5169 1.3637 -5.0795 27 6 3.2349 2.5316 -4.3980 28 6 2.2530 3.2781 -3.4900 29 1 1.8712 2.6070 -2.7206 30 8 2.2860 2.1529 -1.0892 31 1 -0.3632 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.2388 5.0890 1.8189 37 1 3.5119 4.0669 2.5281 38 1 3.8724 5.0835 1.1121 39 1 4.2478 5.0663 -4.3843 40 1 3.8567 6.2912 -3.1524 41 1 2.7051 6.6946 -5.3586 42 1 1.5725 6.4850 -4.0016 43 1 2.4017 4.3053 -5.9726 44 1 0.8501 5.1785 -5.9880 45 1 -0.3764 3.0961 -5.7176 46 1 -0.1273 2.0569 -4.2935 47 1 -1.2091 1.6209 -9.3138 48 1 3.1901 0.8856 -5.7911 49 1 2.2034 0.6386 -4.3285 50 1 4.0631 2.1500 -3.8010 51 1 3.6187 3.2141 -5.1564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021706168.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:50 Heat of formation + Delta-G solvation = 14.403199 kcal Electronic energy + Delta-G solvation = -33392.616503 eV Core-core repulsion = 29294.394293 eV Total energy + Delta-G solvation = -4098.222210 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.61427 -40.45543 -38.50613 -35.87064 -35.37077 -34.42402 -33.02584 -32.45333 -31.05771 -30.51139 -30.22759 -28.00742 -25.86815 -25.31758 -24.54557 -22.89303 -22.76864 -21.73851 -21.56749 -21.12120 -20.00071 -18.49215 -17.42992 -17.17579 -16.85115 -16.19197 -15.94542 -15.43344 -15.04786 -14.95954 -14.84507 -14.30064 -14.05108 -13.94430 -13.90586 -13.49112 -13.37060 -13.15884 -12.98954 -12.89902 -12.70239 -12.48623 -12.41263 -12.37054 -11.97885 -11.96341 -11.79316 -11.48997 -11.16969 -11.10541 -10.95342 -10.83246 -10.63404 -10.55588 -10.49926 -10.18371 -10.14661 -9.88667 -9.63863 -9.49731 -9.00341 -8.73987 -8.47438 -7.04145 -5.99937 -3.39923 0.70531 2.22128 2.25607 2.93725 3.03067 3.25228 3.40848 3.43140 3.67392 4.36022 4.45411 4.54387 4.74465 4.82702 4.83695 4.88404 4.96111 5.07640 5.12267 5.13686 5.27303 5.31803 5.36837 5.38025 5.50005 5.51548 5.53768 5.58448 5.62050 5.69067 5.76903 5.77576 5.87726 5.92641 5.98328 6.00420 6.07936 6.14088 6.16988 6.19525 6.25807 6.34698 6.45462 6.51641 6.54092 6.60826 6.73175 6.90555 7.28090 7.49674 7.88987 7.95059 8.26769 8.85810 9.64719 10.01883 11.15998 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.004575 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.888265 B = 6118.794373 C = 7739.011972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.032 4.032 3 C 0.218 3.782 4 N -0.490 5.490 5 C 0.078 3.922 6 C -0.080 4.080 7 C -0.115 4.115 8 C 0.609 3.391 9 O -0.528 6.528 10 N -0.593 5.593 11 C 0.112 3.888 12 C -0.133 4.133 13 C -0.108 4.108 14 C -0.109 4.109 15 H 0.061 0.939 16 C 0.133 3.867 17 N -0.602 5.602 18 C -0.258 4.258 19 H 0.087 0.913 20 C 0.025 3.975 21 N -0.911 5.911 22 Si 0.883 3.117 23 H -0.290 1.290 24 H -0.304 1.304 25 H -0.267 1.267 26 C 0.153 3.847 27 C -0.143 4.143 28 C 0.137 3.863 29 H 0.105 0.895 30 O -0.174 6.174 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.028 0.972 47 H 0.263 0.737 48 H 0.068 0.932 49 H 0.024 0.976 50 H 0.055 0.945 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 1.977 17.272 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.070 4.070 3 C 0.013 3.987 4 N -0.220 5.220 5 C -0.046 4.046 6 C -0.137 4.137 7 C -0.170 4.170 8 C 0.396 3.604 9 O -0.407 6.407 10 N -0.323 5.323 11 C -0.009 4.009 12 C -0.171 4.171 13 C -0.146 4.146 14 C -0.130 4.130 15 H 0.079 0.921 16 C 0.007 3.993 17 N -0.325 5.325 18 C -0.386 4.386 19 H 0.104 0.896 20 C -0.174 4.174 21 N -0.554 5.554 22 Si 0.714 3.286 23 H -0.218 1.218 24 H -0.232 1.232 25 H -0.192 1.192 26 C 0.027 3.973 27 C -0.183 4.183 28 C 0.035 3.965 29 H 0.122 0.878 30 O -0.062 6.062 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.046 0.954 47 H 0.073 0.927 48 H 0.086 0.914 49 H 0.042 0.958 50 H 0.074 0.926 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.469 2.251 17.896 18.848 hybrid contribution -0.989 0.099 -0.223 1.019 sum 4.480 2.350 17.673 18.383 Atomic orbital electron populations 1.21794 0.92624 1.03400 1.03171 1.20214 0.97245 0.83916 1.05643 1.26721 0.96193 0.96675 0.79146 1.70335 1.18094 1.03572 1.29981 1.22023 0.97378 0.94023 0.91180 1.20383 1.02796 0.93143 0.97423 1.22886 1.12541 0.86581 0.94970 1.16413 0.78613 0.84049 0.81282 1.90802 1.46471 1.29964 1.73487 1.48343 1.55587 1.23540 1.04870 1.21661 0.96478 0.90408 0.92381 1.21955 0.97788 0.98671 0.98728 1.21501 1.01198 0.94536 0.97316 1.21872 0.96216 0.98061 0.96882 0.92072 1.21310 0.92571 0.90761 0.94690 1.44305 1.23247 1.57440 1.07523 1.18897 0.93347 1.44483 0.81870 0.89582 1.25279 0.97385 0.99382 0.95329 1.69779 1.21839 1.53050 1.10705 0.86976 0.83185 0.77207 0.81243 1.21835 1.23237 1.19201 1.20849 0.89282 0.92425 0.94770 1.22418 0.97570 0.99614 0.98687 1.21867 0.92752 0.86301 0.95578 0.87808 1.84695 1.63144 1.22303 1.36037 0.91788 0.91752 0.90519 0.88222 0.87392 0.90249 0.90567 0.88527 0.91001 0.89222 0.90726 0.92044 0.89887 0.91669 0.90728 0.95377 0.92737 0.91359 0.95794 0.92618 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.90 37.16 0.37 -0.91 16 2 C -0.03 -0.28 6.56 -27.88 -0.18 -0.46 16 3 C 0.22 2.75 7.57 -12.80 -0.10 2.65 16 4 N -0.49 -6.76 11.26 -7.07 -0.08 -6.84 16 5 C 0.08 1.10 7.16 -82.47 -0.59 0.51 16 6 C -0.08 -0.92 9.95 36.01 0.36 -0.57 16 7 C -0.12 -1.73 6.85 -36.84 -0.25 -1.98 16 8 C 0.61 9.49 7.67 -12.83 -0.10 9.39 16 9 O -0.53 -8.75 14.21 5.20 0.07 -8.68 16 10 N -0.59 -8.80 2.68 -166.45 -0.45 -9.24 16 11 C 0.11 1.50 5.94 -3.73 -0.02 1.47 16 12 C -0.13 -1.77 6.08 -26.60 -0.16 -1.93 16 13 C -0.11 -1.76 4.85 -26.75 -0.13 -1.89 16 14 C -0.11 -1.86 2.50 -90.74 -0.23 -2.09 16 15 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 16 C 0.13 2.71 3.55 -3.95 -0.01 2.70 16 17 N -0.60 -13.10 2.39 -172.63 -0.41 -13.51 16 18 C -0.26 -6.74 10.08 -15.06 -0.15 -6.89 16 19 H 0.09 2.42 8.06 -52.48 -0.42 2.00 16 20 C 0.03 0.69 5.31 -17.43 -0.09 0.60 16 21 N -0.91 -26.97 13.97 55.49 0.78 -26.20 16 22 Si 0.88 21.48 24.31 -169.99 -4.13 17.35 16 23 H -0.29 -6.91 6.76 56.52 0.38 -6.53 16 24 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 25 H -0.27 -6.24 6.08 56.52 0.34 -5.89 16 26 C 0.15 2.77 6.51 -3.74 -0.02 2.74 16 27 C -0.14 -2.23 5.00 -26.60 -0.13 -2.36 16 28 C 0.14 2.14 2.40 -67.37 -0.16 1.97 16 29 H 0.10 1.67 4.22 -52.85 -0.22 1.45 16 30 O -0.17 -2.50 7.43 4.43 0.03 -2.47 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 38 H 0.10 1.17 6.35 -51.93 -0.33 0.84 16 39 H 0.07 0.91 7.22 -51.93 -0.37 0.53 16 40 H 0.09 1.17 7.02 -51.93 -0.36 0.81 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.48 6.03 -51.93 -0.31 1.17 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.07 1.69 4.42 -51.93 -0.23 1.46 16 46 H 0.03 0.58 6.74 -51.93 -0.35 0.23 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.07 1.23 7.94 -51.93 -0.41 0.82 16 49 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.07 1.18 5.25 -51.93 -0.27 0.90 16 LS Contribution 381.48 15.07 5.75 5.75 Total: -1.00 -30.82 381.48 -8.05 -38.88 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -8.00 Total: 2.00 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -1.61 Total: 2.97 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.16 Total: -55.80 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.11 Total: -11.15 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.13 Total: 17.35 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.82 -8.05 -38.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021706168.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.279 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds