Wall clock time and date at job start Wed Apr 1 2020 04:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47312 * 2 1 4 4 N 1.30619 * 125.42675 * 89.97755 * 3 2 1 5 5 C 1.33689 * 108.99806 * 179.97438 * 4 3 2 6 6 C 1.50702 * 126.27286 * 179.97438 * 5 4 3 7 7 C 1.36334 * 107.45356 * 359.97438 * 5 4 3 8 8 C 1.46722 * 126.64374 * 179.97438 * 7 5 4 9 9 O 1.21686 * 120.00241 * 6.90234 * 8 7 5 10 10 N 1.34777 * 120.00337 * 186.90572 * 8 7 5 11 11 C 1.46944 * 120.84854 * 186.08732 * 10 8 7 12 12 C 1.53134 * 109.02923 * 233.99170 * 11 10 8 13 13 C 1.53117 * 109.47950 * 305.92704 * 12 11 10 14 14 C 1.52852 * 109.34236 * 60.65156 * 13 12 11 15 15 H 1.09005 * 109.24878 * 56.70423 * 14 13 12 16 16 C 1.52764 * 110.21649 * 176.75293 * 14 13 12 17 17 N 1.46892 * 109.19133 * 66.55493 * 16 14 13 18 18 C 1.36940 * 120.76869 * 233.35657 * 17 16 14 19 19 H 1.08003 * 120.00268 * 151.51773 * 18 17 16 20 20 C 1.38816 * 120.00121 * 331.51226 * 18 17 16 21 21 N 1.31613 * 120.00052 * 163.75995 * 20 18 17 22 22 Si 1.86796 * 119.99855 * 343.75971 * 20 18 17 23 23 H 1.48503 * 109.47381 * 95.19705 * 22 20 18 24 24 H 1.48501 * 109.47333 * 215.20091 * 22 20 18 25 25 H 1.48502 * 109.47136 * 335.20068 * 22 20 18 26 26 C 1.46970 * 118.45982 * 53.33169 * 17 16 14 27 27 C 1.53091 * 108.62106 * 305.69172 * 26 17 16 28 28 C 1.47235 * 121.49564 * 5.54761 * 10 8 7 29 29 H 1.08998 * 110.00711 * 4.17924 * 28 10 8 30 30 O 1.33669 * 125.42750 * 270.26403 * 3 2 1 31 31 H 1.08996 * 109.46691 * 300.00237 * 1 2 3 32 32 H 1.09002 * 109.47022 * 59.99616 * 1 2 3 33 33 H 1.08995 * 109.47196 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47061 * 239.99713 * 2 1 3 35 35 H 1.09002 * 109.47022 * 120.00384 * 2 1 3 36 36 H 1.08998 * 109.47007 * 270.02872 * 6 5 4 37 37 H 1.09009 * 109.47080 * 30.02352 * 6 5 4 38 38 H 1.08990 * 109.47565 * 150.02496 * 6 5 4 39 39 H 1.09002 * 109.54672 * 114.12125 * 11 10 8 40 40 H 1.09004 * 109.61819 * 353.90148 * 11 10 8 41 41 H 1.09005 * 109.46619 * 185.92903 * 12 11 10 42 42 H 1.08997 * 109.47377 * 65.93226 * 12 11 10 43 43 H 1.09005 * 109.49346 * 300.69627 * 13 12 11 44 44 H 1.08996 * 109.49211 * 180.61744 * 13 12 11 45 45 H 1.08999 * 109.51884 * 306.64398 * 16 14 13 46 46 H 1.08997 * 109.56830 * 186.49331 * 16 14 13 47 47 H 0.96998 * 119.99848 * 179.97438 * 21 20 18 48 48 H 1.09003 * 109.61226 * 185.95387 * 26 17 16 49 49 H 1.09000 * 109.75665 * 65.51916 * 26 17 16 50 50 H 1.08997 * 109.45741 * 175.37812 * 27 26 17 51 51 H 1.09002 * 109.45772 * 295.31647 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2844 2.1347 1.0644 5 6 2.7125 3.3434 0.6863 6 6 3.1115 4.4739 1.5995 7 6 2.7221 3.3659 -0.6769 8 6 3.1203 4.4902 -1.5314 9 8 3.6070 5.4890 -1.0352 10 7 2.9471 4.4168 -2.8659 11 6 3.4586 5.4721 -3.7513 12 6 2.3133 5.9874 -4.6275 13 6 1.6583 4.8106 -5.3559 14 6 1.0957 3.8289 -4.3282 15 1 0.3970 4.3527 -3.6759 16 6 0.3667 2.6865 -5.0334 17 7 1.3398 1.8857 -5.7880 18 6 1.1547 1.6317 -7.1208 19 1 2.0077 1.4714 -7.7636 20 6 -0.1293 1.5801 -7.6458 21 7 -0.3119 1.6573 -8.9469 22 14 -1.5980 1.4011 -6.5056 23 1 -2.1600 2.7430 -6.2078 24 1 -2.6350 0.5646 -7.1615 25 1 -1.1667 0.7534 -5.2408 26 6 2.5169 1.3637 -5.0795 27 6 3.2349 2.5316 -4.3980 28 6 2.2530 3.2781 -3.4900 29 1 1.8712 2.6070 -2.7206 30 8 2.2860 2.1529 -1.0892 31 1 -0.3632 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.2388 5.0890 1.8189 37 1 3.5119 4.0669 2.5281 38 1 3.8724 5.0835 1.1121 39 1 4.2478 5.0663 -4.3843 40 1 3.8567 6.2912 -3.1524 41 1 2.7051 6.6946 -5.3586 42 1 1.5725 6.4850 -4.0016 43 1 2.4017 4.3053 -5.9726 44 1 0.8501 5.1785 -5.9880 45 1 -0.3764 3.0961 -5.7176 46 1 -0.1273 2.0569 -4.2935 47 1 -1.2091 1.6209 -9.3138 48 1 3.1901 0.8856 -5.7911 49 1 2.2034 0.6386 -4.3285 50 1 4.0631 2.1500 -3.8010 51 1 3.6187 3.2141 -5.1564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021706168.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:48 Heat of formation + Delta-G solvation = -5.443749 kcal Electronic energy + Delta-G solvation = -33393.477131 eV Core-core repulsion = 29294.394293 eV Total energy + Delta-G solvation = -4099.082839 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.63087 -41.70578 -39.82142 -37.29181 -36.46148 -35.21265 -34.31128 -34.23232 -32.29909 -31.88936 -31.56430 -29.03645 -27.30614 -26.68551 -25.58206 -24.40176 -23.95519 -23.16891 -22.52105 -22.24140 -21.23650 -19.84874 -18.94873 -18.37418 -18.10438 -17.26977 -17.19114 -17.16273 -16.25454 -16.21028 -15.82406 -15.58449 -15.48941 -15.37845 -14.99584 -14.60881 -14.50607 -14.30291 -14.26881 -14.09811 -14.07004 -13.81088 -13.65058 -13.56715 -13.29183 -13.18187 -12.66676 -12.62866 -12.47972 -12.20704 -12.19884 -12.09783 -12.04075 -11.97571 -11.84964 -11.79149 -11.51183 -11.35090 -11.25399 -10.96620 -10.74055 -10.08391 -9.64497 -8.90786 -8.12551 -5.47667 -0.34618 1.21100 1.24556 1.30351 1.41553 1.49178 1.80689 1.90770 2.42821 2.77227 3.09135 3.24159 3.36653 3.55386 3.59061 3.78122 3.89412 3.98550 4.00160 4.12191 4.13038 4.17674 4.25000 4.30920 4.38728 4.50343 4.56697 4.58052 4.61848 4.64947 4.69740 4.75382 4.77842 4.80297 4.83811 4.92191 4.92850 4.96399 4.99810 5.02602 5.03310 5.05662 5.22274 5.24263 5.26751 5.31036 5.44668 5.56195 5.89732 6.11097 6.16812 6.46241 6.79411 6.92335 7.63403 8.04368 9.07228 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.004575 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.888265 B = 6118.794373 C = 7739.011972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.033 4.033 3 C 0.226 3.774 4 N -0.507 5.507 5 C 0.078 3.922 6 C -0.078 4.078 7 C -0.142 4.142 8 C 0.609 3.391 9 O -0.542 6.542 10 N -0.592 5.592 11 C 0.112 3.888 12 C -0.122 4.122 13 C -0.105 4.105 14 C -0.105 4.105 15 H 0.069 0.931 16 C 0.132 3.868 17 N -0.611 5.611 18 C -0.236 4.236 19 H 0.056 0.944 20 C -0.032 4.032 21 N -0.961 5.961 22 Si 0.940 3.060 23 H -0.285 1.285 24 H -0.316 1.316 25 H -0.249 1.249 26 C 0.150 3.850 27 C -0.131 4.131 28 C 0.146 3.854 29 H 0.107 0.893 30 O -0.184 6.184 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.035 0.965 47 H 0.259 0.741 48 H 0.064 0.936 49 H 0.041 0.959 50 H 0.075 0.925 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.842 1.768 20.078 20.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.071 4.071 3 C 0.021 3.979 4 N -0.236 5.236 5 C -0.046 4.046 6 C -0.135 4.135 7 C -0.196 4.196 8 C 0.398 3.602 9 O -0.423 6.423 10 N -0.322 5.322 11 C -0.009 4.009 12 C -0.160 4.160 13 C -0.142 4.142 14 C -0.126 4.126 15 H 0.087 0.913 16 C 0.006 3.994 17 N -0.335 5.335 18 C -0.365 4.365 19 H 0.073 0.927 20 C -0.226 4.226 21 N -0.607 5.607 22 Si 0.770 3.230 23 H -0.212 1.212 24 H -0.246 1.246 25 H -0.172 1.172 26 C 0.025 3.975 27 C -0.171 4.171 28 C 0.044 3.956 29 H 0.124 0.876 30 O -0.072 6.072 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.132 0.868 35 H 0.147 0.853 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.053 0.947 47 H 0.068 0.932 48 H 0.082 0.918 49 H 0.059 0.941 50 H 0.093 0.907 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.939 2.054 20.760 21.690 hybrid contribution -1.045 0.125 -1.044 1.482 sum 4.894 2.179 19.715 20.430 Atomic orbital electron populations 1.21787 0.92274 1.04545 1.02098 1.20520 0.97345 0.81805 1.07400 1.27609 0.94285 0.97542 0.78481 1.70390 1.19089 1.03705 1.30460 1.22448 0.96237 0.94573 0.91346 1.20435 1.02973 0.92532 0.97561 1.22808 1.14566 0.86992 0.95246 1.16476 0.78299 0.84092 0.81335 1.90790 1.47179 1.30598 1.73683 1.48296 1.55503 1.23523 1.04909 1.21761 0.96544 0.90342 0.92290 1.21871 0.97680 0.97607 0.98863 1.21425 1.00319 0.95440 0.97034 1.21762 0.96800 0.96973 0.97038 0.91272 1.21282 0.92232 0.91695 0.94196 1.44355 1.24561 1.58233 1.06348 1.18805 0.92186 1.41959 0.83595 0.92651 1.25845 1.00033 1.00408 0.96334 1.69916 1.22095 1.56049 1.12662 0.86048 0.79827 0.77192 0.79966 1.21222 1.24552 1.17238 1.21002 0.87958 0.93681 0.94857 1.22258 0.97736 0.98509 0.98558 1.21677 0.92127 0.86544 0.95288 0.87627 1.84650 1.63538 1.22285 1.36736 0.92226 0.93420 0.88292 0.86803 0.85268 0.89314 0.88975 0.89255 0.90129 0.88602 0.88735 0.91829 0.91680 0.93258 0.93134 0.94744 0.93158 0.91758 0.94116 0.90684 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.90 71.98 0.71 -1.38 16 2 C -0.03 -0.47 6.56 29.85 0.20 -0.27 16 3 C 0.23 5.14 7.57 88.29 0.67 5.81 16 4 N -0.51 -12.88 11.26 -291.06 -3.28 -16.16 16 5 C 0.08 2.06 7.16 41.83 0.30 2.36 16 6 C -0.08 -1.65 9.95 71.24 0.71 -0.94 16 7 C -0.14 -3.99 6.85 24.04 0.16 -3.83 16 8 C 0.61 17.87 7.67 86.46 0.66 18.53 16 9 O -0.54 -17.07 14.21 -4.30 -0.06 -17.13 16 10 N -0.59 -16.33 2.68 -798.75 -2.14 -18.47 16 11 C 0.11 2.73 5.94 86.34 0.51 3.24 16 12 C -0.12 -3.00 6.08 30.68 0.19 -2.82 16 13 C -0.10 -3.31 4.85 30.58 0.15 -3.17 16 14 C -0.10 -3.42 2.50 -10.87 -0.03 -3.44 16 15 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 16 C 0.13 5.22 3.55 86.23 0.31 5.52 16 17 N -0.61 -26.20 2.39 -700.08 -1.67 -27.88 16 18 C -0.24 -12.53 10.08 84.03 0.85 -11.68 16 19 H 0.06 3.24 8.06 -2.91 -0.02 3.21 16 20 C -0.03 -1.78 5.31 84.86 0.45 -1.33 16 21 N -0.96 -58.79 13.97 21.65 0.30 -58.48 16 22 Si 0.94 44.77 24.31 68.60 1.67 46.44 16 23 H -0.28 -13.15 6.76 99.48 0.67 -12.48 16 24 H -0.32 -15.57 7.11 99.48 0.71 -14.86 16 25 H -0.25 -10.92 6.08 99.48 0.61 -10.32 16 26 C 0.15 5.19 6.51 86.32 0.56 5.75 16 27 C -0.13 -3.82 5.00 30.68 0.15 -3.66 16 28 C 0.15 4.25 2.40 44.95 0.11 4.36 16 29 H 0.11 3.14 4.22 -16.95 -0.07 3.07 16 30 O -0.18 -4.86 7.43 -7.05 -0.05 -4.91 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.09 2.04 6.35 -2.39 -0.02 2.02 16 39 H 0.08 1.84 7.22 -2.39 -0.02 1.83 16 40 H 0.10 2.28 7.02 -2.39 -0.02 2.26 16 41 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 2.30 6.03 -2.38 -0.01 2.28 16 44 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.05 2.26 4.42 -2.39 -0.01 2.25 16 46 H 0.03 1.33 6.74 -2.39 -0.02 1.32 16 47 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 48 H 0.06 2.26 7.94 -2.39 -0.02 2.24 16 49 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 51 H 0.07 2.08 5.25 -2.39 -0.01 2.07 16 Total: -1.00 -67.31 381.48 2.17 -65.14 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.74 Total: 18.41 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 6.66 Total: 13.05 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -6.79 Total: -120.99 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.11 Total: -22.04 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.67 Total: 46.44 kcal Total: -67.31 2.17 -65.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021706168.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.694 kcal (2) G-P(sol) polarization free energy of solvation -67.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds