Wall clock time and date at job start Wed Apr 1 2020 05:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47103 * 2 1 4 4 C 1.50702 * 109.47157 * 180.02562 * 3 2 1 5 5 N 1.29933 * 125.37631 * 89.99626 * 4 3 2 6 6 C 1.36071 * 108.47685 * 179.97438 * 5 4 3 7 7 C 1.47418 * 126.45163 * 179.97438 * 6 5 4 8 8 O 1.21612 * 120.00014 * 173.30201 * 7 6 5 9 9 N 1.34776 * 119.99869 * 353.29621 * 7 6 5 10 10 C 1.47069 * 120.84532 * 4.66087 * 9 7 6 11 11 C 1.52666 * 109.30242 * 233.36366 * 10 9 7 12 12 C 1.53147 * 109.69086 * 306.24826 * 11 10 9 13 13 C 1.52818 * 109.26063 * 60.71041 * 12 11 10 14 14 H 1.09004 * 109.47263 * 57.99184 * 13 12 11 15 15 C 1.53068 * 110.34196 * 178.53265 * 13 12 11 16 16 N 1.47068 * 108.33438 * 175.44405 * 15 13 12 17 17 C 1.36936 * 120.47029 * 126.69965 * 16 15 13 18 18 H 1.08002 * 119.99951 * 215.57233 * 17 16 15 19 19 C 1.38816 * 120.00293 * 35.56910 * 17 16 15 20 20 N 1.31622 * 119.99727 * 356.17880 * 19 17 16 21 21 Si 1.86791 * 120.00116 * 176.17416 * 19 17 16 22 22 H 1.48499 * 109.47447 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47356 * 120.00288 * 21 19 17 24 24 H 1.48503 * 109.47358 * 240.00094 * 21 19 17 25 25 C 1.46864 * 119.05337 * 306.67615 * 16 15 13 26 26 C 1.53311 * 109.10421 * 52.66192 * 25 16 15 27 27 C 1.46716 * 120.84779 * 184.93090 * 9 7 6 28 28 H 1.08997 * 109.53296 * 245.43569 * 27 9 7 29 29 C 1.36094 * 107.10042 * 0.02562 * 6 5 4 30 30 O 1.34046 * 125.37871 * 269.97703 * 4 3 2 31 31 H 1.08997 * 109.47429 * 59.99941 * 1 2 3 32 32 H 1.08996 * 109.47189 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46971 * 299.99758 * 1 2 3 34 34 H 1.09004 * 109.46971 * 240.00242 * 2 1 3 35 35 H 1.08997 * 109.47429 * 120.00059 * 2 1 3 36 36 H 1.08996 * 109.47272 * 60.00320 * 3 2 1 37 37 H 1.09002 * 109.47047 * 299.99806 * 3 2 1 38 38 H 1.09004 * 109.53837 * 353.28943 * 10 9 7 39 39 H 1.09007 * 109.54465 * 113.54517 * 10 9 7 40 40 H 1.08998 * 109.52262 * 186.11007 * 11 10 9 41 41 H 1.09006 * 109.29037 * 66.24576 * 11 10 9 42 42 H 1.08996 * 109.50728 * 300.76892 * 12 11 10 43 43 H 1.09000 * 109.50248 * 180.64386 * 12 11 10 44 44 H 1.09000 * 109.68831 * 55.73156 * 15 13 12 45 45 H 1.09000 * 109.72209 * 295.17422 * 15 13 12 46 46 H 0.96997 * 119.99673 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.53340 * 292.76753 * 25 16 15 48 48 H 1.09008 * 109.59092 * 172.58070 * 25 16 15 49 49 H 1.09002 * 109.55745 * 186.05443 * 26 25 16 50 50 H 1.08999 * 109.56096 * 65.72894 * 26 25 16 51 51 H 1.07993 * 126.52565 * 179.97438 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.2988 1.4426 -1.0604 6 6 5.6009 1.4431 -0.6654 7 6 6.7833 1.4429 -1.5458 8 8 7.8957 1.5663 -1.0701 9 7 6.6315 1.3058 -2.8780 10 6 5.2919 1.2573 -3.4832 11 6 5.1747 0.0058 -4.3497 12 6 6.3275 -0.0342 -5.3571 13 6 7.6554 -0.0780 -4.6021 14 1 7.6729 -0.9497 -3.9478 15 6 8.8249 -0.1553 -5.5865 16 7 10.0790 -0.0844 -4.8216 17 6 11.0443 -1.0426 -4.9802 18 1 11.6358 -1.3585 -4.1336 19 6 11.2624 -1.6081 -6.2291 20 7 10.4922 -1.2787 -7.2443 21 14 12.6491 -2.8364 -6.4688 22 1 13.3623 -3.0354 -5.1816 23 1 12.0886 -4.1322 -6.9290 24 1 13.5987 -2.3186 -7.4864 25 6 10.2815 1.0291 -3.8856 26 6 9.0818 1.1096 -2.9345 27 6 7.7981 1.1952 -3.7607 28 1 7.8435 2.0655 -4.4154 29 6 5.6063 1.4428 0.6955 30 8 4.3236 1.4428 1.0920 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 4.5376 1.2267 -2.6970 39 1 5.1393 2.1414 -4.1024 40 1 4.2253 0.0211 -4.8849 41 1 5.2179 -0.8781 -3.7133 42 1 6.2942 0.8569 -5.9838 43 1 6.2343 -0.9228 -5.9815 44 1 8.7729 0.6799 -6.2850 45 1 8.7821 -1.0961 -6.1353 46 1 10.6448 -1.6735 -8.1170 47 1 10.3684 1.9620 -4.4425 48 1 11.1921 0.8619 -3.3103 49 1 9.1721 1.9967 -2.3076 50 1 9.0531 0.2188 -2.3071 51 1 6.4766 1.4427 1.3349 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021711743.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:44 Heat of formation + Delta-G solvation = 21.835858 kcal Electronic energy + Delta-G solvation = -31994.734731 eV Core-core repulsion = 27896.834825 eV Total energy + Delta-G solvation = -4097.899906 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.69001 -40.23746 -37.60296 -35.99472 -35.71787 -34.87528 -32.71639 -32.47190 -30.96867 -30.08414 -29.06956 -27.50687 -25.50877 -25.36245 -23.48499 -22.83042 -22.36655 -22.15240 -21.25430 -20.24090 -19.30175 -19.18195 -17.39388 -17.00064 -16.64745 -16.47850 -15.77101 -15.49291 -15.10108 -14.95773 -14.72159 -14.23804 -14.00563 -13.87749 -13.77150 -13.61947 -13.35802 -13.01531 -12.73202 -12.64084 -12.34296 -12.27852 -12.20703 -11.99098 -11.86575 -11.47588 -11.43639 -11.30914 -11.21876 -10.89508 -10.86024 -10.64990 -10.62603 -10.18370 -10.05864 -9.94290 -9.82248 -9.64938 -9.29111 -9.19676 -8.83796 -8.39635 -8.12433 -6.44268 -5.72133 -3.24287 0.97034 1.80508 2.31806 3.11547 3.38524 3.40250 3.47609 3.50198 3.59811 4.41444 4.45978 4.49046 4.53742 4.67372 4.81497 5.03419 5.12572 5.17078 5.27166 5.30527 5.31550 5.36988 5.43204 5.45950 5.50872 5.57183 5.63706 5.65577 5.68183 5.79236 5.80661 5.91370 5.99823 6.14791 6.29581 6.35969 6.44137 6.50447 6.55565 6.64782 6.70901 6.78151 6.90130 7.04224 7.16113 7.25832 7.28052 7.50110 7.74289 7.85693 7.86314 8.38422 8.60592 9.31871 9.91323 10.51203 11.33778 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018386 B = 0.002651 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.508725 B =10559.618526 C =11247.340296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.025 4.025 4 C 0.195 3.805 5 N -0.455 5.455 6 C -0.060 4.060 7 C 0.593 3.407 8 O -0.530 6.530 9 N -0.584 5.584 10 C 0.064 3.936 11 C -0.128 4.128 12 C -0.113 4.113 13 C -0.119 4.119 14 H 0.063 0.937 15 C 0.179 3.821 16 N -0.596 5.596 17 C -0.248 4.248 18 H 0.063 0.937 19 C 0.006 3.994 20 N -0.906 5.906 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.140 3.860 26 C -0.123 4.123 27 C 0.155 3.845 28 H 0.065 0.935 29 C 0.006 3.994 30 O -0.196 6.196 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.147 0.853 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.016 0.984 45 H 0.102 0.898 46 H 0.253 0.747 47 H 0.014 0.986 48 H 0.055 0.945 49 H 0.082 0.918 50 H 0.061 0.939 51 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.570 6.015 14.317 26.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.063 4.063 4 C -0.012 4.012 5 N -0.185 5.185 6 C -0.180 4.180 7 C 0.380 3.620 8 O -0.408 6.408 9 N -0.314 5.314 10 C -0.059 4.059 11 C -0.166 4.166 12 C -0.151 4.151 13 C -0.140 4.140 14 H 0.082 0.918 15 C 0.053 3.947 16 N -0.319 5.319 17 C -0.378 4.378 18 H 0.081 0.919 19 C -0.192 4.192 20 N -0.551 5.551 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.215 1.215 25 C 0.013 3.987 26 C -0.162 4.162 27 C 0.054 3.946 28 H 0.083 0.917 29 C -0.067 4.067 30 O -0.082 6.082 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.127 0.873 38 H 0.163 0.837 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.034 0.966 45 H 0.119 0.881 46 H 0.063 0.937 47 H 0.032 0.968 48 H 0.073 0.927 49 H 0.101 0.899 50 H 0.080 0.920 51 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -21.172 6.030 13.790 25.976 hybrid contribution 1.025 -0.677 0.257 1.255 sum -20.147 5.352 14.047 25.137 Atomic orbital electron populations 1.21752 0.94492 1.02417 1.02208 1.21559 0.96624 0.94554 1.03446 1.20256 0.80792 0.99737 1.05500 1.26540 0.96400 0.99587 0.78714 1.70364 1.01178 1.18795 1.28172 1.22150 0.92028 1.10536 0.93264 1.16906 0.85836 0.77510 0.81789 1.90860 1.23402 1.51171 1.75366 1.48121 1.08587 1.69438 1.05243 1.22807 0.85400 0.97465 1.00230 1.21783 0.98774 0.98106 0.97983 1.21508 0.94264 1.01917 0.97423 1.22293 0.96630 0.96353 0.98758 0.91836 1.20956 0.81163 1.02422 0.90200 1.44079 1.15658 1.24639 1.47506 1.19227 1.11821 1.14268 0.92505 0.91919 1.25321 0.98177 1.00223 0.95458 1.69900 1.38626 1.45877 1.00678 0.86216 0.82430 0.80392 0.77782 1.20256 1.21753 1.21544 1.21133 0.95570 0.90691 0.91281 1.22548 0.93376 1.03112 0.97166 1.21401 0.84306 0.98113 0.90787 0.91656 1.25262 0.84623 1.01119 0.95707 1.84373 1.16809 1.69282 1.37746 0.92167 0.92085 0.92424 0.90764 0.91376 0.88703 0.87334 0.83701 0.92535 0.91512 0.92337 0.92303 0.91775 0.96633 0.88051 0.93669 0.96788 0.92686 0.89931 0.92040 0.75307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.91 37.16 0.37 -0.23 16 2 C -0.12 -0.66 5.92 -26.73 -0.16 -0.82 16 3 C -0.02 -0.14 5.84 -27.88 -0.16 -0.30 16 4 C 0.20 1.86 7.56 -13.08 -0.10 1.76 16 5 N -0.45 -5.48 7.69 -7.65 -0.06 -5.54 16 6 C -0.06 -0.83 6.75 -83.02 -0.56 -1.39 16 7 C 0.59 10.04 7.58 -12.52 -0.09 9.95 16 8 O -0.53 -10.06 12.56 5.27 0.07 -10.00 16 9 N -0.58 -9.90 2.98 -166.85 -0.50 -10.39 16 10 C 0.06 0.91 6.29 -3.90 -0.02 0.88 16 11 C -0.13 -1.81 6.05 -26.83 -0.16 -1.97 16 12 C -0.11 -1.89 5.24 -26.75 -0.14 -2.03 16 13 C -0.12 -2.41 2.21 -90.54 -0.20 -2.61 16 14 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 15 C 0.18 4.39 4.58 -3.70 -0.02 4.37 16 16 N -0.60 -15.69 3.00 -172.25 -0.52 -16.20 16 17 C -0.25 -7.06 9.54 -15.06 -0.14 -7.20 16 18 H 0.06 1.78 7.83 -52.49 -0.41 1.36 16 19 C 0.01 0.18 5.31 -17.43 -0.09 0.09 16 20 N -0.91 -26.47 10.64 55.49 0.59 -25.88 16 21 Si 0.90 22.16 29.55 -169.99 -5.02 17.13 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 C 0.14 3.23 6.50 -3.68 -0.02 3.20 16 26 C -0.12 -2.55 3.81 -26.62 -0.10 -2.65 16 27 C 0.16 2.99 2.64 -67.72 -0.18 2.81 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 C 0.01 0.07 11.95 29.96 0.36 0.43 16 30 O -0.20 -1.96 10.73 6.52 0.07 -1.89 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.15 1.94 3.66 -78.27 -0.29 1.65 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.10 2.78 5.96 -51.93 -0.31 2.47 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.05 1.25 7.93 -51.92 -0.41 0.84 16 49 H 0.08 1.69 6.12 -51.93 -0.32 1.38 16 50 H 0.06 1.39 7.45 -51.93 -0.39 1.00 16 51 H 0.23 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 391.74 15.07 5.90 5.90 Total: -1.00 -32.48 391.74 -9.35 -41.83 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.45 Total: 0.74 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -1.43 Total: 4.30 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.48 Total: -58.02 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.14 Total: -11.89 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.48 -9.35 -41.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021711743.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.666 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds