Wall clock time and date at job start Wed Apr 1 2020 05:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47103 * 2 1 4 4 C 1.50702 * 109.47157 * 180.02562 * 3 2 1 5 5 N 1.29933 * 125.37631 * 89.99626 * 4 3 2 6 6 C 1.36071 * 108.47685 * 179.97438 * 5 4 3 7 7 C 1.47418 * 126.45163 * 179.97438 * 6 5 4 8 8 O 1.21612 * 120.00014 * 173.30201 * 7 6 5 9 9 N 1.34776 * 119.99869 * 353.29621 * 7 6 5 10 10 C 1.47069 * 120.84532 * 4.66087 * 9 7 6 11 11 C 1.52666 * 109.30242 * 233.36366 * 10 9 7 12 12 C 1.53147 * 109.69086 * 306.24826 * 11 10 9 13 13 C 1.52818 * 109.26063 * 60.71041 * 12 11 10 14 14 H 1.09004 * 109.47263 * 57.99184 * 13 12 11 15 15 C 1.53068 * 110.34196 * 178.53265 * 13 12 11 16 16 N 1.47068 * 108.33438 * 175.44405 * 15 13 12 17 17 C 1.36936 * 120.47029 * 126.69965 * 16 15 13 18 18 H 1.08002 * 119.99951 * 215.57233 * 17 16 15 19 19 C 1.38816 * 120.00293 * 35.56910 * 17 16 15 20 20 N 1.31622 * 119.99727 * 356.17880 * 19 17 16 21 21 Si 1.86791 * 120.00116 * 176.17416 * 19 17 16 22 22 H 1.48499 * 109.47447 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47356 * 120.00288 * 21 19 17 24 24 H 1.48503 * 109.47358 * 240.00094 * 21 19 17 25 25 C 1.46864 * 119.05337 * 306.67615 * 16 15 13 26 26 C 1.53311 * 109.10421 * 52.66192 * 25 16 15 27 27 C 1.46716 * 120.84779 * 184.93090 * 9 7 6 28 28 H 1.08997 * 109.53296 * 245.43569 * 27 9 7 29 29 C 1.36094 * 107.10042 * 0.02562 * 6 5 4 30 30 O 1.34046 * 125.37871 * 269.97703 * 4 3 2 31 31 H 1.08997 * 109.47429 * 59.99941 * 1 2 3 32 32 H 1.08996 * 109.47189 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46971 * 299.99758 * 1 2 3 34 34 H 1.09004 * 109.46971 * 240.00242 * 2 1 3 35 35 H 1.08997 * 109.47429 * 120.00059 * 2 1 3 36 36 H 1.08996 * 109.47272 * 60.00320 * 3 2 1 37 37 H 1.09002 * 109.47047 * 299.99806 * 3 2 1 38 38 H 1.09004 * 109.53837 * 353.28943 * 10 9 7 39 39 H 1.09007 * 109.54465 * 113.54517 * 10 9 7 40 40 H 1.08998 * 109.52262 * 186.11007 * 11 10 9 41 41 H 1.09006 * 109.29037 * 66.24576 * 11 10 9 42 42 H 1.08996 * 109.50728 * 300.76892 * 12 11 10 43 43 H 1.09000 * 109.50248 * 180.64386 * 12 11 10 44 44 H 1.09000 * 109.68831 * 55.73156 * 15 13 12 45 45 H 1.09000 * 109.72209 * 295.17422 * 15 13 12 46 46 H 0.96997 * 119.99673 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.53340 * 292.76753 * 25 16 15 48 48 H 1.09008 * 109.59092 * 172.58070 * 25 16 15 49 49 H 1.09002 * 109.55745 * 186.05443 * 26 25 16 50 50 H 1.08999 * 109.56096 * 65.72894 * 26 25 16 51 51 H 1.07993 * 126.52565 * 179.97438 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.2988 1.4426 -1.0604 6 6 5.6009 1.4431 -0.6654 7 6 6.7833 1.4429 -1.5458 8 8 7.8957 1.5663 -1.0701 9 7 6.6315 1.3058 -2.8780 10 6 5.2919 1.2573 -3.4832 11 6 5.1747 0.0058 -4.3497 12 6 6.3275 -0.0342 -5.3571 13 6 7.6554 -0.0780 -4.6021 14 1 7.6729 -0.9497 -3.9478 15 6 8.8249 -0.1553 -5.5865 16 7 10.0790 -0.0844 -4.8216 17 6 11.0443 -1.0426 -4.9802 18 1 11.6358 -1.3585 -4.1336 19 6 11.2624 -1.6081 -6.2291 20 7 10.4922 -1.2787 -7.2443 21 14 12.6491 -2.8364 -6.4688 22 1 13.3623 -3.0354 -5.1816 23 1 12.0886 -4.1322 -6.9290 24 1 13.5987 -2.3186 -7.4864 25 6 10.2815 1.0291 -3.8856 26 6 9.0818 1.1096 -2.9345 27 6 7.7981 1.1952 -3.7607 28 1 7.8435 2.0655 -4.4154 29 6 5.6063 1.4428 0.6955 30 8 4.3236 1.4428 1.0920 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 4.5376 1.2267 -2.6970 39 1 5.1393 2.1414 -4.1024 40 1 4.2253 0.0211 -4.8849 41 1 5.2179 -0.8781 -3.7133 42 1 6.2942 0.8569 -5.9838 43 1 6.2343 -0.9228 -5.9815 44 1 8.7729 0.6799 -6.2850 45 1 8.7821 -1.0961 -6.1353 46 1 10.6448 -1.6735 -8.1170 47 1 10.3684 1.9620 -4.4425 48 1 11.1921 0.8619 -3.3103 49 1 9.1721 1.9967 -2.3076 50 1 9.0531 0.2188 -2.3071 51 1 6.4766 1.4427 1.3349 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021711743.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:43 Heat of formation + Delta-G solvation = 2.098050 kcal Electronic energy + Delta-G solvation = -31995.590627 eV Core-core repulsion = 27896.834825 eV Total energy + Delta-G solvation = -4098.755802 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.53704 -41.65631 -39.14579 -37.42751 -36.41800 -35.81292 -34.43457 -34.07695 -32.04373 -31.59102 -30.76259 -28.12462 -27.39077 -26.65735 -24.94732 -23.92692 -23.86184 -23.14512 -22.11953 -21.57814 -21.04771 -20.41288 -18.73511 -18.42277 -17.84142 -17.52921 -17.16411 -16.79463 -16.30705 -15.99652 -15.80045 -15.58265 -15.51189 -15.29843 -15.15330 -14.89609 -14.54964 -14.16554 -14.11440 -14.00151 -13.76087 -13.53410 -13.15818 -12.99022 -12.86429 -12.76916 -12.75204 -12.68772 -12.48852 -12.42805 -12.13833 -12.05379 -12.02098 -11.80154 -11.70135 -11.63846 -11.57914 -11.18592 -10.73489 -10.54857 -10.31163 -10.09006 -9.53634 -8.55339 -7.87963 -5.45170 0.06271 0.90219 1.43621 1.44865 1.54404 1.55986 1.88719 2.20635 2.47434 2.75559 3.25240 3.48454 3.62300 3.76329 3.86496 3.91082 4.03486 4.06694 4.12520 4.13012 4.25814 4.30088 4.37292 4.47204 4.51304 4.53897 4.61381 4.71069 4.74524 4.76940 4.83269 4.85173 4.89936 4.96251 4.96442 5.01567 5.07177 5.13420 5.26591 5.29718 5.30554 5.35290 5.39851 5.46614 5.49249 5.55891 5.62340 5.78120 5.81530 6.32384 6.44433 6.52445 7.07469 7.15679 7.81951 8.36982 9.15236 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018386 B = 0.002651 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.508725 B =10559.618526 C =11247.340296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.024 4.024 4 C 0.209 3.791 5 N -0.474 5.474 6 C -0.093 4.093 7 C 0.588 3.412 8 O -0.560 6.560 9 N -0.588 5.588 10 C 0.062 3.938 11 C -0.118 4.118 12 C -0.109 4.109 13 C -0.105 4.105 14 H 0.039 0.961 15 C 0.189 3.811 16 N -0.615 5.615 17 C -0.268 4.268 18 H 0.058 0.942 19 C -0.043 4.043 20 N -0.930 5.930 21 Si 0.970 3.030 22 H -0.270 1.270 23 H -0.287 1.287 24 H -0.287 1.287 25 C 0.138 3.862 26 C -0.102 4.102 27 C 0.162 3.838 28 H 0.065 0.935 29 C 0.027 3.973 30 O -0.191 6.191 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.162 0.838 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.049 0.951 42 H 0.066 0.934 43 H 0.061 0.939 44 H -0.001 1.001 45 H 0.070 0.930 46 H 0.252 0.748 47 H 0.016 0.984 48 H 0.051 0.949 49 H 0.088 0.912 50 H 0.039 0.961 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.071 6.464 15.678 29.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.061 4.061 4 C 0.001 3.999 5 N -0.203 5.203 6 C -0.211 4.211 7 C 0.377 3.623 8 O -0.441 6.441 9 N -0.318 5.318 10 C -0.059 4.059 11 C -0.156 4.156 12 C -0.147 4.147 13 C -0.126 4.126 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.339 5.339 17 C -0.399 4.399 18 H 0.075 0.925 19 C -0.238 4.238 20 N -0.576 5.576 21 Si 0.798 3.202 22 H -0.195 1.195 23 H -0.214 1.214 24 H -0.213 1.213 25 C 0.012 3.988 26 C -0.141 4.141 27 C 0.059 3.941 28 H 0.083 0.917 29 C -0.047 4.047 30 O -0.077 6.077 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.178 0.822 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.017 0.983 45 H 0.088 0.912 46 H 0.062 0.938 47 H 0.034 0.966 48 H 0.069 0.931 49 H 0.107 0.893 50 H 0.058 0.942 51 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -23.707 6.488 15.158 28.877 hybrid contribution 1.742 -0.799 -0.096 1.919 sum -21.965 5.690 15.061 27.234 Atomic orbital electron populations 1.21731 0.93230 1.02580 1.03031 1.21521 0.97618 0.94185 1.02573 1.20550 0.77938 1.00211 1.07423 1.27324 0.97580 0.97151 0.77874 1.70162 1.00568 1.20292 1.29326 1.21708 0.91773 1.13898 0.93703 1.17289 0.86630 0.76550 0.81853 1.90817 1.24934 1.52510 1.75805 1.48130 1.08693 1.69655 1.05334 1.23049 0.84209 0.97835 1.00818 1.21733 0.98962 0.97708 0.97208 1.21481 0.93244 1.02161 0.97834 1.22009 0.96940 0.95986 0.97705 0.94264 1.20705 0.82425 0.99893 0.90671 1.44338 1.16166 1.25238 1.48150 1.19462 1.12491 1.15184 0.92734 0.92471 1.26057 1.00317 1.02337 0.95119 1.70077 1.39665 1.46956 1.00875 0.85169 0.79311 0.78010 0.77750 1.19469 1.21363 1.21334 1.21222 0.96673 0.89766 0.91104 1.22291 0.93389 1.02195 0.96223 1.21093 0.84848 0.97279 0.90836 0.91717 1.25637 0.85557 0.98520 0.95000 1.84431 1.16392 1.69092 1.37804 0.91634 0.92311 0.91321 0.92193 0.91785 0.86213 0.85965 0.82228 0.91501 0.88050 0.93245 0.91556 0.92062 0.98306 0.91208 0.93832 0.96592 0.93058 0.89345 0.94244 0.73245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 71.98 0.71 -0.04 16 2 C -0.12 -0.98 5.92 30.59 0.18 -0.80 16 3 C -0.02 -0.18 5.84 29.85 0.17 -0.01 16 4 C 0.21 3.41 7.56 88.39 0.67 4.07 16 5 N -0.47 -10.43 7.69 -293.04 -2.25 -12.68 16 6 C -0.09 -2.42 6.75 40.41 0.27 -2.15 16 7 C 0.59 19.77 7.58 86.66 0.66 20.43 16 8 O -0.56 -21.48 12.56 -4.07 -0.05 -21.53 16 9 N -0.59 -19.74 2.98 -800.04 -2.38 -22.12 16 10 C 0.06 1.67 6.29 86.16 0.54 2.21 16 11 C -0.12 -3.12 6.05 30.53 0.18 -2.93 16 12 C -0.11 -3.61 5.24 30.58 0.16 -3.45 16 13 C -0.11 -4.39 2.21 -10.74 -0.02 -4.41 16 14 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 15 C 0.19 9.69 4.58 86.29 0.40 10.09 16 16 N -0.62 -33.71 3.00 -698.89 -2.10 -35.81 16 17 C -0.27 -15.77 9.54 84.03 0.80 -14.96 16 18 H 0.06 3.34 7.83 -2.91 -0.02 3.32 16 19 C -0.04 -2.47 5.31 84.86 0.45 -2.02 16 20 N -0.93 -55.87 10.64 21.65 0.23 -55.64 16 21 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 25 C 0.14 6.61 6.50 86.41 0.56 7.17 16 26 C -0.10 -4.36 3.81 30.66 0.12 -4.25 16 27 C 0.16 6.34 2.64 45.01 0.12 6.46 16 28 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 29 C 0.03 0.54 11.95 67.32 0.80 1.34 16 30 O -0.19 -3.30 10.73 0.43 0.00 -3.29 16 31 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.07 0.21 8.14 -2.38 -0.02 0.20 16 34 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 36 H 0.12 0.38 8.14 -2.39 -0.02 0.37 16 37 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.16 3.94 3.66 -54.40 -0.20 3.74 16 39 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.07 4.02 5.96 -2.39 -0.01 4.01 16 46 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 47 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.05 2.43 7.93 -2.38 -0.02 2.41 16 49 H 0.09 3.70 6.12 -2.39 -0.01 3.69 16 50 H 0.04 1.85 7.45 -2.39 -0.02 1.83 16 51 H 0.25 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -72.72 391.74 2.98 -69.73 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.73 Total: 16.17 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 6.78 Total: 16.75 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -6.50 Total: -126.26 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.05 Total: -24.82 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -72.72 2.98 -69.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021711743.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.831 kcal (2) G-P(sol) polarization free energy of solvation -72.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds