Wall clock time and date at job start Wed Apr 1 2020 04:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47477 * 2 1 4 4 N 1.29935 * 125.37841 * 89.99433 * 3 2 1 5 5 C 1.36070 * 108.47821 * 179.97438 * 4 3 2 6 6 C 1.47419 * 126.44757 * 179.97438 * 5 4 3 7 7 O 1.21612 * 119.99699 * 187.07909 * 6 5 4 8 8 N 1.34779 * 119.99997 * 6.81145 * 6 5 4 9 9 C 1.46923 * 120.62872 * 6.64826 * 8 6 5 10 10 C 1.53193 * 108.77574 * 126.37179 * 9 8 6 11 11 C 1.53039 * 109.31414 * 54.63271 * 10 9 8 12 12 C 1.53047 * 109.53685 * 298.63882 * 11 10 9 13 13 C 1.46925 * 120.62815 * 186.36984 * 8 6 5 14 14 H 1.09002 * 109.58506 * 113.84194 * 13 8 6 15 15 C 1.52999 * 109.58911 * 353.41638 * 13 8 6 16 16 H 1.09000 * 109.87050 * 51.43827 * 15 13 8 17 17 C 1.54323 * 109.88158 * 290.26719 * 15 13 8 18 18 C 1.55160 * 102.94229 * 218.39066 * 17 15 13 19 19 C 1.54912 * 101.58145 * 35.49883 * 18 17 15 20 20 N 1.47019 * 109.88379 * 172.45583 * 15 13 8 21 21 C 1.36932 * 125.64828 * 298.32286 * 20 15 13 22 22 H 1.08004 * 119.99764 * 153.19303 * 21 20 15 23 23 C 1.38812 * 120.00151 * 333.19796 * 21 20 15 24 24 N 1.31619 * 120.00072 * 165.19099 * 23 21 20 25 25 Si 1.86805 * 119.99850 * 345.18336 * 23 21 20 26 26 H 1.48499 * 109.46805 * 84.06701 * 25 23 21 27 27 H 1.48492 * 109.47058 * 204.06824 * 25 23 21 28 28 H 1.48506 * 109.47069 * 324.06862 * 25 23 21 29 29 C 1.36085 * 107.09980 * 0.24948 * 5 4 3 30 30 O 1.34048 * 125.37681 * 269.98112 * 3 2 1 31 31 H 1.08999 * 109.46775 * 299.99798 * 1 2 3 32 32 H 1.08996 * 109.47117 * 59.99934 * 1 2 3 33 33 H 1.09002 * 109.46841 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46876 * 239.99969 * 2 1 3 35 35 H 1.08998 * 109.47358 * 120.00556 * 2 1 3 36 36 H 1.09005 * 109.58661 * 246.15329 * 9 8 6 37 37 H 1.08998 * 109.59284 * 6.44058 * 9 8 6 38 38 H 1.09000 * 109.50149 * 174.58496 * 10 9 8 39 39 H 1.08998 * 109.49580 * 294.68522 * 10 9 8 40 40 H 1.09002 * 109.46027 * 58.65395 * 11 10 9 41 41 H 1.08993 * 109.46515 * 178.61600 * 11 10 9 42 42 H 1.08997 * 109.49559 * 181.31965 * 12 11 10 43 43 H 1.09000 * 109.49263 * 301.37576 * 12 11 10 44 44 H 1.09000 * 110.72077 * 336.74620 * 17 15 13 45 45 H 1.08992 * 110.72294 * 100.02509 * 17 15 13 46 46 H 1.09007 * 111.00115 * 277.42497 * 18 17 15 47 47 H 1.09002 * 111.03918 * 153.58882 * 18 17 15 48 48 H 1.08998 * 110.36763 * 204.15592 * 19 18 17 49 49 H 1.08997 * 110.45932 * 81.87988 * 19 18 17 50 50 H 0.97006 * 119.99926 * 179.97438 * 24 23 21 51 51 H 1.08008 * 126.52479 * 179.75750 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2831 2.1301 1.0594 5 6 2.7178 3.3573 0.6639 6 6 3.1117 4.4725 1.5439 7 8 3.3606 5.5637 1.0682 8 7 3.1908 4.2841 2.8761 9 6 3.0302 2.9425 3.4532 10 6 4.2411 2.6397 4.3414 11 6 4.4003 3.7547 5.3775 12 6 4.6458 5.0859 4.6633 13 6 3.4452 5.4155 3.7783 14 1 2.5696 5.5877 4.4043 15 6 3.7458 6.6700 2.9556 16 1 2.9653 6.8198 2.2097 17 6 5.1176 6.5272 2.2631 18 6 5.7103 7.9573 2.3678 19 6 5.1790 8.4137 3.7496 20 7 3.8234 7.8415 3.8405 21 6 2.8049 8.3220 4.6195 22 1 3.0285 8.8720 5.5217 23 6 1.4852 8.1021 4.2498 24 7 0.5168 8.2965 5.1198 25 14 1.0834 7.5303 2.5174 26 1 1.2231 6.0540 2.4386 27 1 -0.3108 7.9144 2.1802 28 1 2.0188 8.1681 1.5563 29 6 2.7145 3.3635 -0.6970 30 8 2.2915 2.1523 -1.0930 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 2.1202 2.9089 4.0523 37 1 2.9682 2.2053 2.6527 38 1 4.0895 1.6883 4.8513 39 1 5.1389 2.5842 3.7259 40 1 3.4924 3.8262 5.9765 41 1 5.2464 3.5294 6.0266 42 1 4.7824 5.8754 5.4022 43 1 5.5403 5.0074 4.0453 44 1 5.7445 5.8103 2.7933 45 1 4.9945 6.2361 1.2200 46 1 5.3293 8.5973 1.5719 47 1 6.7999 7.9310 2.3574 48 1 5.1356 9.5017 3.7988 49 1 5.8099 8.0235 4.5482 50 1 -0.4055 8.1432 4.8613 51 1 3.0002 4.1855 -1.3368 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025224663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:16 Heat of formation + Delta-G solvation = 67.029332 kcal Electronic energy + Delta-G solvation = -33755.740618 eV Core-core repulsion = 29659.800448 eV Total energy + Delta-G solvation = -4095.940170 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.57411 -40.49883 -37.44945 -36.78184 -35.22109 -34.21783 -32.49930 -32.31777 -31.22106 -29.80202 -29.58498 -27.42021 -25.21241 -24.63430 -24.10977 -23.74418 -22.62538 -21.47325 -20.95986 -20.16903 -19.73246 -18.71834 -17.41062 -17.04855 -16.94898 -15.95690 -15.56780 -15.47890 -15.20259 -14.93843 -14.78475 -14.67170 -14.07881 -13.88093 -13.64434 -13.28692 -13.23971 -13.02829 -12.95590 -12.73095 -12.61396 -12.15228 -11.97395 -11.87446 -11.59509 -11.44361 -11.39921 -11.28005 -11.06527 -10.90900 -10.66062 -10.59476 -10.37020 -10.25795 -9.98361 -9.83260 -9.63910 -9.54668 -9.28216 -8.99744 -8.84343 -8.42035 -7.90588 -6.70690 -5.84051 -3.20525 1.07608 1.92635 2.42249 3.24252 3.41991 3.58455 3.62338 3.71792 3.76023 4.54888 4.61232 4.67288 4.74340 4.85183 4.98076 5.13237 5.19286 5.25594 5.32024 5.36177 5.40685 5.41939 5.46049 5.53435 5.59185 5.62398 5.71113 5.75795 5.80815 5.83877 5.86527 5.98830 6.06316 6.13910 6.26520 6.34268 6.36863 6.44340 6.46921 6.55568 6.61896 6.67352 6.77212 6.83861 7.03100 7.05938 7.13233 7.36617 7.40787 7.82277 7.99814 8.44069 8.54609 9.01076 9.82027 10.38079 11.31820 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012401 B = 0.004479 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.328190 B = 6250.314222 C = 6580.141737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.026 4.026 3 C 0.191 3.809 4 N -0.455 5.455 5 C -0.057 4.057 6 C 0.582 3.418 7 O -0.515 6.515 8 N -0.579 5.579 9 C 0.078 3.922 10 C -0.129 4.129 11 C -0.122 4.122 12 C -0.123 4.123 13 C 0.135 3.865 14 H 0.086 0.914 15 C 0.142 3.858 16 H 0.089 0.911 17 C -0.128 4.128 18 C -0.138 4.138 19 C 0.133 3.867 20 N -0.609 5.609 21 C -0.239 4.239 22 H 0.087 0.913 23 C 0.025 3.975 24 N -0.916 5.916 25 Si 0.898 3.102 26 H -0.279 1.279 27 H -0.317 1.317 28 H -0.275 1.275 29 C 0.002 3.998 30 O -0.197 6.197 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.060 0.940 37 H 0.133 0.867 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.089 0.911 46 H 0.061 0.939 47 H 0.057 0.943 48 H 0.044 0.956 49 H 0.022 0.978 50 H 0.261 0.739 51 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.173 -19.127 -10.023 22.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.064 4.064 3 C -0.017 4.017 4 N -0.186 5.186 5 C -0.177 4.177 6 C 0.369 3.631 7 O -0.393 6.393 8 N -0.310 5.310 9 C -0.045 4.045 10 C -0.167 4.167 11 C -0.160 4.160 12 C -0.161 4.161 13 C 0.031 3.969 14 H 0.104 0.896 15 C 0.036 3.964 16 H 0.105 0.895 17 C -0.165 4.165 18 C -0.176 4.176 19 C 0.007 3.993 20 N -0.336 5.336 21 C -0.367 4.367 22 H 0.104 0.896 23 C -0.173 4.173 24 N -0.560 5.560 25 Si 0.732 3.268 26 H -0.206 1.206 27 H -0.246 1.246 28 H -0.201 1.201 29 C -0.072 4.072 30 O -0.083 6.083 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.126 0.874 36 H 0.079 0.921 37 H 0.149 0.851 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.107 0.893 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.063 0.937 49 H 0.040 0.960 50 H 0.070 0.930 51 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 5.981 -18.710 -9.549 21.841 hybrid contribution -0.347 0.020 -1.368 1.411 sum 5.633 -18.690 -10.917 22.366 Atomic orbital electron populations 1.21801 0.92922 1.03044 1.03262 1.20108 0.96996 0.83997 1.05295 1.26534 0.99371 0.97062 0.78722 1.70613 1.16332 1.03071 1.28578 1.22142 1.08202 0.94086 0.93244 1.16827 0.78754 0.85541 0.81973 1.90810 1.49692 1.23309 1.75536 1.47928 1.68543 1.09551 1.04953 1.22572 0.97280 0.84860 0.99758 1.21887 0.98548 0.98520 0.97776 1.21569 1.01636 0.95201 0.97553 1.21912 0.98162 0.96975 0.99084 1.21900 0.98446 0.85183 0.91327 0.89583 1.22065 0.97974 0.85184 0.91131 0.89498 1.23111 0.95617 0.96012 1.01737 1.22788 0.98438 0.97651 0.98742 1.21642 0.87132 0.96828 0.93662 1.44972 1.09342 1.27238 1.52036 1.18624 0.83753 1.32441 1.01853 0.89582 1.25130 0.95405 0.99477 0.97324 1.69785 0.99558 1.52944 1.33682 0.86820 0.74469 0.78923 0.86589 1.20641 1.24610 1.20147 1.25243 0.99728 0.86442 0.95745 1.84360 1.63678 1.22528 1.37779 0.91501 0.92116 0.90795 0.88812 0.87429 0.92145 0.85058 0.91406 0.92247 0.91850 0.92392 0.89950 0.91731 0.92113 0.89309 0.92001 0.92479 0.93745 0.95997 0.92955 0.75376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.90 37.16 0.37 -0.60 16 2 C -0.03 -0.17 6.56 -27.88 -0.18 -0.35 16 3 C 0.19 2.13 7.56 -13.08 -0.10 2.03 16 4 N -0.46 -6.38 7.81 -7.66 -0.06 -6.44 16 5 C -0.06 -0.91 6.67 -83.02 -0.55 -1.46 16 6 C 0.58 11.23 6.26 -12.52 -0.08 11.15 16 7 O -0.52 -11.02 9.29 5.27 0.05 -10.97 16 8 N -0.58 -11.08 2.85 -166.73 -0.48 -11.56 16 9 C 0.08 1.23 6.12 -3.71 -0.02 1.21 16 10 C -0.13 -1.74 6.08 -26.61 -0.16 -1.91 16 11 C -0.12 -1.85 5.89 -26.69 -0.16 -2.00 16 12 C -0.12 -2.25 4.94 -26.83 -0.13 -2.38 16 13 C 0.14 2.90 1.73 -67.82 -0.12 2.78 16 14 H 0.09 2.19 6.84 -51.93 -0.35 1.83 16 15 C 0.14 3.29 1.04 -66.96 -0.07 3.22 16 16 H 0.09 2.27 0.86 -52.47 -0.05 2.22 16 17 C -0.13 -2.54 5.19 -24.90 -0.13 -2.66 16 18 C -0.14 -2.60 7.09 -24.58 -0.17 -2.77 16 19 C 0.13 2.83 7.23 -2.53 -0.02 2.82 16 20 N -0.61 -15.40 2.57 -162.58 -0.42 -15.82 16 21 C -0.24 -6.97 10.12 -15.06 -0.15 -7.12 16 22 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 23 C 0.03 0.76 4.97 -17.43 -0.09 0.67 16 24 N -0.92 -29.04 13.97 55.49 0.78 -28.27 16 25 Si 0.90 25.10 23.27 -169.99 -3.96 21.15 16 26 H -0.28 -7.56 5.10 56.52 0.29 -7.28 16 27 H -0.32 -9.05 7.11 56.52 0.40 -8.64 16 28 H -0.27 -7.90 6.77 56.52 0.38 -7.52 16 29 C 0.00 0.02 11.95 29.96 0.36 0.38 16 30 O -0.20 -2.29 10.73 6.50 0.07 -2.22 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 35 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.13 1.93 4.08 -61.79 -0.25 1.68 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.64 8.02 -51.93 -0.42 1.23 16 43 H 0.06 1.12 5.43 -51.93 -0.28 0.84 16 44 H 0.06 1.12 5.08 -51.93 -0.26 0.86 16 45 H 0.09 1.79 5.62 -51.85 -0.29 1.50 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 51 H 0.23 2.35 8.06 -52.48 -0.42 1.93 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -35.10 373.10 -7.74 -42.84 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.94 Total: 2.66 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.41 Total: 3.00 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -0.18 Total: -62.08 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.12 Total: -13.19 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -3.96 Total: 21.15 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.10 -7.74 -42.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025224663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.871 kcal (2) G-P(sol) polarization free energy of solvation -35.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds