Wall clock time and date at job start Wed Apr 1 2020 04:26:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.50699 * 109.47477 * 2 1
4 4 N 1.29935 * 125.37841 * 89.99433 * 3 2 1
5 5 C 1.36070 * 108.47821 * 179.97438 * 4 3 2
6 6 C 1.47419 * 126.44757 * 179.97438 * 5 4 3
7 7 O 1.21612 * 119.99699 * 187.07909 * 6 5 4
8 8 N 1.34779 * 119.99997 * 6.81145 * 6 5 4
9 9 C 1.46923 * 120.62872 * 6.64826 * 8 6 5
10 10 C 1.53193 * 108.77574 * 126.37179 * 9 8 6
11 11 C 1.53039 * 109.31414 * 54.63271 * 10 9 8
12 12 C 1.53047 * 109.53685 * 298.63882 * 11 10 9
13 13 C 1.46925 * 120.62815 * 186.36984 * 8 6 5
14 14 H 1.09002 * 109.58506 * 113.84194 * 13 8 6
15 15 C 1.52999 * 109.58911 * 353.41638 * 13 8 6
16 16 H 1.09000 * 109.87050 * 51.43827 * 15 13 8
17 17 C 1.54323 * 109.88158 * 290.26719 * 15 13 8
18 18 C 1.55160 * 102.94229 * 218.39066 * 17 15 13
19 19 C 1.54912 * 101.58145 * 35.49883 * 18 17 15
20 20 N 1.47019 * 109.88379 * 172.45583 * 15 13 8
21 21 C 1.36932 * 125.64828 * 298.32286 * 20 15 13
22 22 H 1.08004 * 119.99764 * 153.19303 * 21 20 15
23 23 C 1.38812 * 120.00151 * 333.19796 * 21 20 15
24 24 N 1.31619 * 120.00072 * 165.19099 * 23 21 20
25 25 Si 1.86805 * 119.99850 * 345.18336 * 23 21 20
26 26 H 1.48499 * 109.46805 * 84.06701 * 25 23 21
27 27 H 1.48492 * 109.47058 * 204.06824 * 25 23 21
28 28 H 1.48506 * 109.47069 * 324.06862 * 25 23 21
29 29 C 1.36085 * 107.09980 * 0.24948 * 5 4 3
30 30 O 1.34048 * 125.37681 * 269.98112 * 3 2 1
31 31 H 1.08999 * 109.46775 * 299.99798 * 1 2 3
32 32 H 1.08996 * 109.47117 * 59.99934 * 1 2 3
33 33 H 1.09002 * 109.46841 * 179.97438 * 1 2 3
34 34 H 1.09007 * 109.46876 * 239.99969 * 2 1 3
35 35 H 1.08998 * 109.47358 * 120.00556 * 2 1 3
36 36 H 1.09005 * 109.58661 * 246.15329 * 9 8 6
37 37 H 1.08998 * 109.59284 * 6.44058 * 9 8 6
38 38 H 1.09000 * 109.50149 * 174.58496 * 10 9 8
39 39 H 1.08998 * 109.49580 * 294.68522 * 10 9 8
40 40 H 1.09002 * 109.46027 * 58.65395 * 11 10 9
41 41 H 1.08993 * 109.46515 * 178.61600 * 11 10 9
42 42 H 1.08997 * 109.49559 * 181.31965 * 12 11 10
43 43 H 1.09000 * 109.49263 * 301.37576 * 12 11 10
44 44 H 1.09000 * 110.72077 * 336.74620 * 17 15 13
45 45 H 1.08992 * 110.72294 * 100.02509 * 17 15 13
46 46 H 1.09007 * 111.00115 * 277.42497 * 18 17 15
47 47 H 1.09002 * 111.03918 * 153.58882 * 18 17 15
48 48 H 1.08998 * 110.36763 * 204.15592 * 19 18 17
49 49 H 1.08997 * 110.45932 * 81.87988 * 19 18 17
50 50 H 0.97006 * 119.99926 * 179.97438 * 24 23 21
51 51 H 1.08008 * 126.52479 * 179.75750 * 29 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.2831 2.1301 1.0594
5 6 2.7178 3.3573 0.6639
6 6 3.1117 4.4725 1.5439
7 8 3.3606 5.5637 1.0682
8 7 3.1908 4.2841 2.8761
9 6 3.0302 2.9425 3.4532
10 6 4.2411 2.6397 4.3414
11 6 4.4003 3.7547 5.3775
12 6 4.6458 5.0859 4.6633
13 6 3.4452 5.4155 3.7783
14 1 2.5696 5.5877 4.4043
15 6 3.7458 6.6700 2.9556
16 1 2.9653 6.8198 2.2097
17 6 5.1176 6.5272 2.2631
18 6 5.7103 7.9573 2.3678
19 6 5.1790 8.4137 3.7496
20 7 3.8234 7.8415 3.8405
21 6 2.8049 8.3220 4.6195
22 1 3.0285 8.8720 5.5217
23 6 1.4852 8.1021 4.2498
24 7 0.5168 8.2965 5.1198
25 14 1.0834 7.5303 2.5174
26 1 1.2231 6.0540 2.4386
27 1 -0.3108 7.9144 2.1802
28 1 2.0188 8.1681 1.5563
29 6 2.7145 3.3635 -0.6970
30 8 2.2915 2.1523 -1.0930
31 1 -0.3633 0.5138 0.8900
32 1 -0.3633 0.5138 -0.8899
33 1 -0.3633 -1.0277 -0.0005
34 1 1.8933 -0.5139 -0.8901
35 1 1.8934 -0.5139 0.8899
36 1 2.1202 2.9089 4.0523
37 1 2.9682 2.2053 2.6527
38 1 4.0895 1.6883 4.8513
39 1 5.1389 2.5842 3.7259
40 1 3.4924 3.8262 5.9765
41 1 5.2464 3.5294 6.0266
42 1 4.7824 5.8754 5.4022
43 1 5.5403 5.0074 4.0453
44 1 5.7445 5.8103 2.7933
45 1 4.9945 6.2361 1.2200
46 1 5.3293 8.5973 1.5719
47 1 6.7999 7.9310 2.3574
48 1 5.1356 9.5017 3.7988
49 1 5.8099 8.0235 4.5482
50 1 -0.4055 8.1432 4.8613
51 1 3.0002 4.1855 -1.3368
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001025224663.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:26:15
Heat of formation + Delta-G solvation = 42.371906 kcal
Electronic energy + Delta-G solvation = -33756.809844 eV
Core-core repulsion = 29659.800448 eV
Total energy + Delta-G solvation = -4097.009396 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-44.55000 -42.01660 -39.08795 -38.22202 -36.20318 -34.96406 -34.60741 -33.74021
-32.68134 -31.79702 -30.56488 -28.93004 -26.68253 -26.08941 -25.31208 -25.02570
-24.04504 -22.55821 -22.37270 -21.60523 -21.34301 -20.07423 -19.14503 -18.30657
-17.94085 -17.53449 -17.22891 -17.08637 -16.69585 -16.46959 -15.76017 -15.52090
-15.37626 -15.27260 -15.10949 -14.89392 -14.77266 -14.47789 -14.24039 -14.13195
-13.76287 -13.59041 -13.33562 -13.20909 -12.95931 -12.92586 -12.65597 -12.57485
-12.47283 -12.27754 -12.10292 -12.05914 -11.95534 -11.94102 -11.63553 -11.57846
-11.36122 -11.05323 -10.93365 -10.73604 -10.30196 -10.06908 -9.47164 -8.78043
-8.22650 -5.51815 0.03338 0.88875 1.25034 1.28521 1.43987 1.52735
1.90783 2.17457 2.34330 2.77001 3.07561 3.39269 3.54003 3.74486
3.82167 3.89175 3.94789 4.07642 4.11508 4.19097 4.21707 4.24428
4.32120 4.32284 4.39807 4.45127 4.53664 4.58869 4.64973 4.73405
4.77305 4.86607 4.94609 4.96826 4.97587 5.02593 5.05313 5.07211
5.13602 5.17159 5.19747 5.27935 5.29025 5.37655 5.40649 5.47916
5.59404 5.75828 5.79447 6.09708 6.32059 6.51102 6.80195 7.11676
7.56593 8.18747 8.97628
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012401 B = 0.004479 C = 0.004254
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2257.328190 B = 6250.314222 C = 6580.141737
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.025 4.025
3 C 0.205 3.795
4 N -0.479 5.479
5 C -0.094 4.094
6 C 0.575 3.425
7 O -0.545 6.545
8 N -0.585 5.585
9 C 0.074 3.926
10 C -0.118 4.118
11 C -0.119 4.119
12 C -0.114 4.114
13 C 0.142 3.858
14 H 0.033 0.967
15 C 0.134 3.866
16 H 0.063 0.937
17 C -0.116 4.116
18 C -0.126 4.126
19 C 0.125 3.875
20 N -0.627 5.627
21 C -0.218 4.218
22 H 0.060 0.940
23 C -0.021 4.021
24 N -0.956 5.956
25 Si 0.960 3.040
26 H -0.276 1.276
27 H -0.329 1.329
28 H -0.288 1.288
29 C 0.022 3.978
30 O -0.191 6.191
31 H 0.044 0.956
32 H 0.054 0.946
33 H 0.100 0.900
34 H 0.124 0.876
35 H 0.124 0.876
36 H 0.044 0.956
37 H 0.148 0.852
38 H 0.099 0.901
39 H 0.070 0.930
40 H 0.046 0.954
41 H 0.085 0.915
42 H 0.058 0.942
43 H 0.080 0.920
44 H 0.079 0.921
45 H 0.090 0.910
46 H 0.052 0.948
47 H 0.100 0.900
48 H 0.039 0.961
49 H 0.039 0.961
50 H 0.258 0.742
51 H 0.251 0.749
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.435 -22.525 -11.955 26.860
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.063 4.063
3 C -0.003 4.003
4 N -0.210 5.210
5 C -0.213 4.213
6 C 0.364 3.636
7 O -0.425 6.425
8 N -0.316 5.316
9 C -0.048 4.048
10 C -0.156 4.156
11 C -0.156 4.156
12 C -0.152 4.152
13 C 0.037 3.963
14 H 0.051 0.949
15 C 0.029 3.971
16 H 0.080 0.920
17 C -0.153 4.153
18 C -0.164 4.164
19 C 0.001 3.999
20 N -0.354 5.354
21 C -0.347 4.347
22 H 0.078 0.922
23 C -0.216 4.216
24 N -0.604 5.604
25 Si 0.796 3.204
26 H -0.203 1.203
27 H -0.259 1.259
28 H -0.215 1.215
29 C -0.051 4.051
30 O -0.077 6.077
31 H 0.064 0.936
32 H 0.073 0.927
33 H 0.118 0.882
34 H 0.142 0.858
35 H 0.142 0.858
36 H 0.063 0.937
37 H 0.165 0.835
38 H 0.118 0.882
39 H 0.088 0.912
40 H 0.065 0.935
41 H 0.104 0.896
42 H 0.077 0.923
43 H 0.098 0.902
44 H 0.097 0.903
45 H 0.108 0.892
46 H 0.071 0.929
47 H 0.118 0.882
48 H 0.058 0.942
49 H 0.057 0.943
50 H 0.067 0.933
51 H 0.267 0.733
Dipole moment (debyes) X Y Z Total
from point charges 8.282 -22.144 -11.484 26.284
hybrid contribution -1.042 1.025 -0.779 1.656
sum 7.240 -21.120 -12.263 25.472
Atomic orbital electron populations
1.21801 0.92765 1.04372 1.01915 1.20461 0.96882 0.81370 1.07562
1.27482 0.97067 0.97980 0.77794 1.70466 1.17800 1.02772 1.29919
1.21775 1.11289 0.94377 0.93821 1.17268 0.77994 0.86200 0.82155
1.90771 1.51045 1.24661 1.76068 1.48017 1.68646 1.09945 1.04996
1.22811 0.97889 0.83577 1.00495 1.21848 0.97688 0.99073 0.97007
1.21560 1.01975 0.94114 0.98002 1.21803 0.97075 0.98062 0.98295
1.21489 0.97589 0.85907 0.91317 0.94910 1.22113 0.99474 0.85048
0.90471 0.92019 1.23019 0.93646 0.97104 1.01574 1.22749 1.00862
0.96404 0.96365 1.21853 0.85372 0.96630 0.96037 1.45141 1.09901
1.28761 1.51614 1.18556 0.84835 1.30262 1.01048 0.92229 1.25525
0.95583 1.00942 0.99525 1.69878 0.99713 1.55793 1.34972 0.85831
0.72766 0.78551 0.83292 1.20263 1.25933 1.21503 1.25612 0.97523
0.87066 0.94944 1.84418 1.63423 1.22068 1.37835 0.93644 0.92662
0.88163 0.85819 0.85837 0.93708 0.83543 0.88246 0.91174 0.93547
0.89624 0.92293 0.90196 0.90330 0.89163 0.92881 0.88182 0.94212
0.94277 0.93256 0.73277
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.50 9.90 71.98 0.71 -0.79 16
2 C -0.03 -0.24 6.56 29.85 0.20 -0.04 16
3 C 0.21 4.01 7.56 88.39 0.67 4.68 16
4 N -0.48 -12.61 7.81 -293.04 -2.29 -14.90 16
5 C -0.09 -2.89 6.67 40.40 0.27 -2.62 16
6 C 0.57 21.97 6.26 86.66 0.54 22.51 16
7 O -0.54 -23.21 9.29 -4.07 -0.04 -23.24 16
8 N -0.59 -22.35 2.85 -799.68 -2.28 -24.63 16
9 C 0.07 2.26 6.12 86.36 0.53 2.79 16
10 C -0.12 -2.88 6.08 30.67 0.19 -2.69 16
11 C -0.12 -3.41 5.89 30.62 0.18 -3.23 16
12 C -0.11 -4.10 4.94 30.53 0.15 -3.95 16
13 C 0.14 6.19 1.73 44.83 0.08 6.27 16
14 H 0.03 1.77 6.84 -2.39 -0.02 1.75 16
15 C 0.13 6.25 1.04 45.34 0.05 6.30 16
16 H 0.06 3.29 0.86 -16.61 -0.01 3.27 16
17 C -0.12 -4.43 5.19 31.78 0.16 -4.26 16
18 C -0.13 -4.44 7.09 31.99 0.23 -4.22 16
19 C 0.13 5.25 7.23 86.86 0.63 5.88 16
20 N -0.63 -32.29 2.57 -668.27 -1.72 -34.01 16
21 C -0.22 -13.22 10.12 84.03 0.85 -12.37 16
22 H 0.06 3.87 8.06 -2.91 -0.02 3.85 16
23 C -0.02 -1.33 4.97 84.86 0.42 -0.91 16
24 N -0.96 -63.56 13.97 21.65 0.30 -63.26 16
25 Si 0.96 55.24 23.27 68.60 1.60 56.83 16
26 H -0.28 -15.42 5.10 99.48 0.51 -14.91 16
27 H -0.33 -19.21 7.11 99.48 0.71 -18.50 16
28 H -0.29 -16.88 6.77 99.48 0.67 -16.20 16
29 C 0.02 0.54 11.95 67.32 0.80 1.34 16
30 O -0.19 -3.91 10.73 0.34 0.00 -3.90 16
31 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16
32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16
33 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16
34 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16
35 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16
36 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16
37 H 0.15 4.09 4.08 -21.85 -0.09 4.00 16
38 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16
39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16
40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16
41 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16
42 H 0.06 2.36 8.02 -2.39 -0.02 2.34 16
43 H 0.08 2.60 5.43 -2.39 -0.01 2.58 16
44 H 0.08 2.68 5.08 -2.39 -0.01 2.67 16
45 H 0.09 3.49 5.62 -6.59 -0.04 3.46 16
46 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16
47 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16
48 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16
49 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16
50 H 0.26 16.55 8.31 -92.70 -0.77 15.78 16
51 H 0.25 4.58 8.06 -2.91 -0.02 4.56 16
Total: -1.00 -81.45 373.10 2.83 -78.62
By element:
Atomic # 1 Polarization: 13.21 SS G_CDS: 0.60 Total: 13.80 kcal
Atomic # 6 Polarization: 8.04 SS G_CDS: 6.66 Total: 14.69 kcal
Atomic # 7 Polarization: -130.82 SS G_CDS: -5.99 Total: -136.80 kcal
Atomic # 8 Polarization: -27.11 SS G_CDS: -0.03 Total: -27.15 kcal
Atomic # 14 Polarization: 55.24 SS G_CDS: 1.60 Total: 56.83 kcal
Total: -81.45 2.83 -78.62 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001025224663.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 120.990 kcal
(2) G-P(sol) polarization free energy of solvation -81.446 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.545 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.619 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.372 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds