Wall clock time and date at job start Wed Apr 1 2020 04:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47477 * 2 1 4 4 N 1.29935 * 125.37841 * 89.99433 * 3 2 1 5 5 C 1.36070 * 108.47821 * 179.97438 * 4 3 2 6 6 C 1.47419 * 126.44757 * 179.97438 * 5 4 3 7 7 O 1.21612 * 119.99699 * 187.07909 * 6 5 4 8 8 N 1.34779 * 119.99997 * 6.81145 * 6 5 4 9 9 C 1.46923 * 120.62872 * 6.64826 * 8 6 5 10 10 C 1.53193 * 108.77574 * 126.37179 * 9 8 6 11 11 C 1.53039 * 109.31414 * 54.63271 * 10 9 8 12 12 C 1.53047 * 109.53685 * 298.63882 * 11 10 9 13 13 C 1.46925 * 120.62815 * 186.36984 * 8 6 5 14 14 H 1.09002 * 109.58506 * 113.84194 * 13 8 6 15 15 C 1.52999 * 109.58911 * 353.41638 * 13 8 6 16 16 H 1.09000 * 109.87050 * 51.43827 * 15 13 8 17 17 C 1.54323 * 109.88158 * 290.26719 * 15 13 8 18 18 C 1.55160 * 102.94229 * 218.39066 * 17 15 13 19 19 C 1.54912 * 101.58145 * 35.49883 * 18 17 15 20 20 N 1.47019 * 109.88379 * 172.45583 * 15 13 8 21 21 C 1.36932 * 125.64828 * 298.32286 * 20 15 13 22 22 H 1.08004 * 119.99764 * 153.19303 * 21 20 15 23 23 C 1.38812 * 120.00151 * 333.19796 * 21 20 15 24 24 N 1.31619 * 120.00072 * 165.19099 * 23 21 20 25 25 Si 1.86805 * 119.99850 * 345.18336 * 23 21 20 26 26 H 1.48499 * 109.46805 * 84.06701 * 25 23 21 27 27 H 1.48492 * 109.47058 * 204.06824 * 25 23 21 28 28 H 1.48506 * 109.47069 * 324.06862 * 25 23 21 29 29 C 1.36085 * 107.09980 * 0.24948 * 5 4 3 30 30 O 1.34048 * 125.37681 * 269.98112 * 3 2 1 31 31 H 1.08999 * 109.46775 * 299.99798 * 1 2 3 32 32 H 1.08996 * 109.47117 * 59.99934 * 1 2 3 33 33 H 1.09002 * 109.46841 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46876 * 239.99969 * 2 1 3 35 35 H 1.08998 * 109.47358 * 120.00556 * 2 1 3 36 36 H 1.09005 * 109.58661 * 246.15329 * 9 8 6 37 37 H 1.08998 * 109.59284 * 6.44058 * 9 8 6 38 38 H 1.09000 * 109.50149 * 174.58496 * 10 9 8 39 39 H 1.08998 * 109.49580 * 294.68522 * 10 9 8 40 40 H 1.09002 * 109.46027 * 58.65395 * 11 10 9 41 41 H 1.08993 * 109.46515 * 178.61600 * 11 10 9 42 42 H 1.08997 * 109.49559 * 181.31965 * 12 11 10 43 43 H 1.09000 * 109.49263 * 301.37576 * 12 11 10 44 44 H 1.09000 * 110.72077 * 336.74620 * 17 15 13 45 45 H 1.08992 * 110.72294 * 100.02509 * 17 15 13 46 46 H 1.09007 * 111.00115 * 277.42497 * 18 17 15 47 47 H 1.09002 * 111.03918 * 153.58882 * 18 17 15 48 48 H 1.08998 * 110.36763 * 204.15592 * 19 18 17 49 49 H 1.08997 * 110.45932 * 81.87988 * 19 18 17 50 50 H 0.97006 * 119.99926 * 179.97438 * 24 23 21 51 51 H 1.08008 * 126.52479 * 179.75750 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2831 2.1301 1.0594 5 6 2.7178 3.3573 0.6639 6 6 3.1117 4.4725 1.5439 7 8 3.3606 5.5637 1.0682 8 7 3.1908 4.2841 2.8761 9 6 3.0302 2.9425 3.4532 10 6 4.2411 2.6397 4.3414 11 6 4.4003 3.7547 5.3775 12 6 4.6458 5.0859 4.6633 13 6 3.4452 5.4155 3.7783 14 1 2.5696 5.5877 4.4043 15 6 3.7458 6.6700 2.9556 16 1 2.9653 6.8198 2.2097 17 6 5.1176 6.5272 2.2631 18 6 5.7103 7.9573 2.3678 19 6 5.1790 8.4137 3.7496 20 7 3.8234 7.8415 3.8405 21 6 2.8049 8.3220 4.6195 22 1 3.0285 8.8720 5.5217 23 6 1.4852 8.1021 4.2498 24 7 0.5168 8.2965 5.1198 25 14 1.0834 7.5303 2.5174 26 1 1.2231 6.0540 2.4386 27 1 -0.3108 7.9144 2.1802 28 1 2.0188 8.1681 1.5563 29 6 2.7145 3.3635 -0.6970 30 8 2.2915 2.1523 -1.0930 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 2.1202 2.9089 4.0523 37 1 2.9682 2.2053 2.6527 38 1 4.0895 1.6883 4.8513 39 1 5.1389 2.5842 3.7259 40 1 3.4924 3.8262 5.9765 41 1 5.2464 3.5294 6.0266 42 1 4.7824 5.8754 5.4022 43 1 5.5403 5.0074 4.0453 44 1 5.7445 5.8103 2.7933 45 1 4.9945 6.2361 1.2200 46 1 5.3293 8.5973 1.5719 47 1 6.7999 7.9310 2.3574 48 1 5.1356 9.5017 3.7988 49 1 5.8099 8.0235 4.5482 50 1 -0.4055 8.1432 4.8613 51 1 3.0002 4.1855 -1.3368 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025224663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:15 Heat of formation + Delta-G solvation = 42.371906 kcal Electronic energy + Delta-G solvation = -33756.809844 eV Core-core repulsion = 29659.800448 eV Total energy + Delta-G solvation = -4097.009396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.55000 -42.01660 -39.08795 -38.22202 -36.20318 -34.96406 -34.60741 -33.74021 -32.68134 -31.79702 -30.56488 -28.93004 -26.68253 -26.08941 -25.31208 -25.02570 -24.04504 -22.55821 -22.37270 -21.60523 -21.34301 -20.07423 -19.14503 -18.30657 -17.94085 -17.53449 -17.22891 -17.08637 -16.69585 -16.46959 -15.76017 -15.52090 -15.37626 -15.27260 -15.10949 -14.89392 -14.77266 -14.47789 -14.24039 -14.13195 -13.76287 -13.59041 -13.33562 -13.20909 -12.95931 -12.92586 -12.65597 -12.57485 -12.47283 -12.27754 -12.10292 -12.05914 -11.95534 -11.94102 -11.63553 -11.57846 -11.36122 -11.05323 -10.93365 -10.73604 -10.30196 -10.06908 -9.47164 -8.78043 -8.22650 -5.51815 0.03338 0.88875 1.25034 1.28521 1.43987 1.52735 1.90783 2.17457 2.34330 2.77001 3.07561 3.39269 3.54003 3.74486 3.82167 3.89175 3.94789 4.07642 4.11508 4.19097 4.21707 4.24428 4.32120 4.32284 4.39807 4.45127 4.53664 4.58869 4.64973 4.73405 4.77305 4.86607 4.94609 4.96826 4.97587 5.02593 5.05313 5.07211 5.13602 5.17159 5.19747 5.27935 5.29025 5.37655 5.40649 5.47916 5.59404 5.75828 5.79447 6.09708 6.32059 6.51102 6.80195 7.11676 7.56593 8.18747 8.97628 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012401 B = 0.004479 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.328190 B = 6250.314222 C = 6580.141737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.025 4.025 3 C 0.205 3.795 4 N -0.479 5.479 5 C -0.094 4.094 6 C 0.575 3.425 7 O -0.545 6.545 8 N -0.585 5.585 9 C 0.074 3.926 10 C -0.118 4.118 11 C -0.119 4.119 12 C -0.114 4.114 13 C 0.142 3.858 14 H 0.033 0.967 15 C 0.134 3.866 16 H 0.063 0.937 17 C -0.116 4.116 18 C -0.126 4.126 19 C 0.125 3.875 20 N -0.627 5.627 21 C -0.218 4.218 22 H 0.060 0.940 23 C -0.021 4.021 24 N -0.956 5.956 25 Si 0.960 3.040 26 H -0.276 1.276 27 H -0.329 1.329 28 H -0.288 1.288 29 C 0.022 3.978 30 O -0.191 6.191 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.044 0.956 37 H 0.148 0.852 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.046 0.954 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.052 0.948 47 H 0.100 0.900 48 H 0.039 0.961 49 H 0.039 0.961 50 H 0.258 0.742 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.435 -22.525 -11.955 26.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.063 4.063 3 C -0.003 4.003 4 N -0.210 5.210 5 C -0.213 4.213 6 C 0.364 3.636 7 O -0.425 6.425 8 N -0.316 5.316 9 C -0.048 4.048 10 C -0.156 4.156 11 C -0.156 4.156 12 C -0.152 4.152 13 C 0.037 3.963 14 H 0.051 0.949 15 C 0.029 3.971 16 H 0.080 0.920 17 C -0.153 4.153 18 C -0.164 4.164 19 C 0.001 3.999 20 N -0.354 5.354 21 C -0.347 4.347 22 H 0.078 0.922 23 C -0.216 4.216 24 N -0.604 5.604 25 Si 0.796 3.204 26 H -0.203 1.203 27 H -0.259 1.259 28 H -0.215 1.215 29 C -0.051 4.051 30 O -0.077 6.077 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.118 0.882 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.063 0.937 37 H 0.165 0.835 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.071 0.929 47 H 0.118 0.882 48 H 0.058 0.942 49 H 0.057 0.943 50 H 0.067 0.933 51 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 8.282 -22.144 -11.484 26.284 hybrid contribution -1.042 1.025 -0.779 1.656 sum 7.240 -21.120 -12.263 25.472 Atomic orbital electron populations 1.21801 0.92765 1.04372 1.01915 1.20461 0.96882 0.81370 1.07562 1.27482 0.97067 0.97980 0.77794 1.70466 1.17800 1.02772 1.29919 1.21775 1.11289 0.94377 0.93821 1.17268 0.77994 0.86200 0.82155 1.90771 1.51045 1.24661 1.76068 1.48017 1.68646 1.09945 1.04996 1.22811 0.97889 0.83577 1.00495 1.21848 0.97688 0.99073 0.97007 1.21560 1.01975 0.94114 0.98002 1.21803 0.97075 0.98062 0.98295 1.21489 0.97589 0.85907 0.91317 0.94910 1.22113 0.99474 0.85048 0.90471 0.92019 1.23019 0.93646 0.97104 1.01574 1.22749 1.00862 0.96404 0.96365 1.21853 0.85372 0.96630 0.96037 1.45141 1.09901 1.28761 1.51614 1.18556 0.84835 1.30262 1.01048 0.92229 1.25525 0.95583 1.00942 0.99525 1.69878 0.99713 1.55793 1.34972 0.85831 0.72766 0.78551 0.83292 1.20263 1.25933 1.21503 1.25612 0.97523 0.87066 0.94944 1.84418 1.63423 1.22068 1.37835 0.93644 0.92662 0.88163 0.85819 0.85837 0.93708 0.83543 0.88246 0.91174 0.93547 0.89624 0.92293 0.90196 0.90330 0.89163 0.92881 0.88182 0.94212 0.94277 0.93256 0.73277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.90 71.98 0.71 -0.79 16 2 C -0.03 -0.24 6.56 29.85 0.20 -0.04 16 3 C 0.21 4.01 7.56 88.39 0.67 4.68 16 4 N -0.48 -12.61 7.81 -293.04 -2.29 -14.90 16 5 C -0.09 -2.89 6.67 40.40 0.27 -2.62 16 6 C 0.57 21.97 6.26 86.66 0.54 22.51 16 7 O -0.54 -23.21 9.29 -4.07 -0.04 -23.24 16 8 N -0.59 -22.35 2.85 -799.68 -2.28 -24.63 16 9 C 0.07 2.26 6.12 86.36 0.53 2.79 16 10 C -0.12 -2.88 6.08 30.67 0.19 -2.69 16 11 C -0.12 -3.41 5.89 30.62 0.18 -3.23 16 12 C -0.11 -4.10 4.94 30.53 0.15 -3.95 16 13 C 0.14 6.19 1.73 44.83 0.08 6.27 16 14 H 0.03 1.77 6.84 -2.39 -0.02 1.75 16 15 C 0.13 6.25 1.04 45.34 0.05 6.30 16 16 H 0.06 3.29 0.86 -16.61 -0.01 3.27 16 17 C -0.12 -4.43 5.19 31.78 0.16 -4.26 16 18 C -0.13 -4.44 7.09 31.99 0.23 -4.22 16 19 C 0.13 5.25 7.23 86.86 0.63 5.88 16 20 N -0.63 -32.29 2.57 -668.27 -1.72 -34.01 16 21 C -0.22 -13.22 10.12 84.03 0.85 -12.37 16 22 H 0.06 3.87 8.06 -2.91 -0.02 3.85 16 23 C -0.02 -1.33 4.97 84.86 0.42 -0.91 16 24 N -0.96 -63.56 13.97 21.65 0.30 -63.26 16 25 Si 0.96 55.24 23.27 68.60 1.60 56.83 16 26 H -0.28 -15.42 5.10 99.48 0.51 -14.91 16 27 H -0.33 -19.21 7.11 99.48 0.71 -18.50 16 28 H -0.29 -16.88 6.77 99.48 0.67 -16.20 16 29 C 0.02 0.54 11.95 67.32 0.80 1.34 16 30 O -0.19 -3.91 10.73 0.34 0.00 -3.90 16 31 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.15 4.09 4.08 -21.85 -0.09 4.00 16 38 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.06 2.36 8.02 -2.39 -0.02 2.34 16 43 H 0.08 2.60 5.43 -2.39 -0.01 2.58 16 44 H 0.08 2.68 5.08 -2.39 -0.01 2.67 16 45 H 0.09 3.49 5.62 -6.59 -0.04 3.46 16 46 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 47 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 48 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.26 16.55 8.31 -92.70 -0.77 15.78 16 51 H 0.25 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -81.45 373.10 2.83 -78.62 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.60 Total: 13.80 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 6.66 Total: 14.69 kcal Atomic # 7 Polarization: -130.82 SS G_CDS: -5.99 Total: -136.80 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.03 Total: -27.15 kcal Atomic # 14 Polarization: 55.24 SS G_CDS: 1.60 Total: 56.83 kcal Total: -81.45 2.83 -78.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025224663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.990 kcal (2) G-P(sol) polarization free energy of solvation -81.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds