Wall clock time and date at job start Wed Apr 1 2020 05:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47361 * 2 1 4 4 C 1.53000 * 109.47089 * 240.00143 * 2 1 3 5 5 C 1.50701 * 109.46971 * 120.00235 * 2 1 3 6 6 C 1.35320 * 126.66493 * 60.28678 * 5 2 1 7 7 C 1.42273 * 103.91932 * 180.09007 * 6 5 2 8 8 C 1.48328 * 126.93496 * 179.91123 * 7 6 5 9 9 O 1.21495 * 120.00271 * 359.70528 * 8 7 6 10 10 N 1.34779 * 119.99547 * 179.70736 * 8 7 6 11 11 C 1.46901 * 125.61963 * 359.97088 * 10 8 7 12 12 C 1.54217 * 107.63439 * 178.51679 * 11 10 8 13 13 H 1.08998 * 113.72979 * 215.27962 * 12 11 10 14 14 C 1.54979 * 108.03054 * 87.01203 * 12 11 10 15 15 C 1.54132 * 104.56695 * 214.53821 * 14 12 11 16 16 C 1.53872 * 106.53977 * 24.51247 * 15 14 12 17 17 H 1.09000 * 109.91779 * 238.93636 * 16 15 14 18 18 N 1.46502 * 109.92063 * 117.82543 * 16 15 14 19 19 C 1.36936 * 119.99628 * 86.45577 * 18 16 15 20 20 H 1.08004 * 120.00231 * 359.97438 * 19 18 16 21 21 C 1.38819 * 119.99824 * 179.97438 * 19 18 16 22 22 N 1.31614 * 119.99795 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99712 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47487 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46867 * 120.00230 * 23 21 19 26 26 H 1.48505 * 109.46706 * 239.99395 * 23 21 19 27 27 C 1.53714 * 107.02923 * 358.28007 * 16 15 14 28 28 H 1.08997 * 112.96845 * 214.88141 * 27 16 15 29 29 C 1.47345 * 125.61683 * 180.02562 * 10 8 7 30 30 N 1.30988 * 106.12376 * 359.64679 * 7 6 5 31 31 O 1.20903 * 111.43982 * 0.22555 * 30 7 6 32 32 H 1.08995 * 109.47046 * 300.00028 * 1 2 3 33 33 H 1.09006 * 109.47154 * 59.99996 * 1 2 3 34 34 H 1.08994 * 109.47215 * 179.97438 * 1 2 3 35 35 H 1.08993 * 109.47510 * 179.97438 * 3 2 1 36 36 H 1.08994 * 109.47082 * 300.00454 * 3 2 1 37 37 H 1.09005 * 109.46697 * 59.99621 * 3 2 1 38 38 H 1.09002 * 109.46985 * 300.00192 * 4 2 1 39 39 H 1.09000 * 109.47001 * 60.00253 * 4 2 1 40 40 H 1.08999 * 109.47055 * 180.02562 * 4 2 1 41 41 H 1.07992 * 128.03782 * 359.96520 * 6 5 2 42 42 H 1.09006 * 109.82348 * 58.99502 * 11 10 8 43 43 H 1.08999 * 109.89737 * 298.08440 * 11 10 8 44 44 H 1.08998 * 110.44543 * 95.76032 * 14 12 11 45 45 H 1.09003 * 110.42209 * 333.29701 * 14 12 11 46 46 H 1.09002 * 110.05258 * 265.22682 * 15 14 12 47 47 H 1.09000 * 110.04775 * 143.79498 * 15 14 12 48 48 H 0.96999 * 120.00502 * 266.45224 * 18 16 15 49 49 H 0.97001 * 119.99605 * 180.02562 * 22 21 19 50 50 H 1.08994 * 110.30063 * 84.93590 * 29 10 8 51 51 H 1.09005 * 110.29785 * 322.80089 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.7944 -1.9975 1.5741 7 6 2.4870 -2.1563 2.8067 8 6 2.5616 -3.3842 3.6354 9 8 1.9867 -4.3935 3.2791 10 7 3.2672 -3.3802 4.7838 11 6 4.0070 -2.2344 5.3294 12 6 4.6273 -2.6747 6.6709 13 1 4.6556 -1.8847 7.4213 14 6 6.0010 -3.3274 6.3730 15 6 6.1351 -4.4458 7.4251 16 6 4.7044 -4.8258 7.8452 17 1 4.5802 -4.6761 8.9177 18 7 4.4387 -6.2252 7.5027 19 6 4.7833 -7.2214 8.3768 20 1 5.2513 -6.9754 9.3186 21 6 4.5310 -8.5473 8.0525 22 7 3.9602 -8.8470 6.9051 23 14 5.0004 -9.9061 9.2453 24 1 5.6222 -9.3101 10.4549 25 1 3.7845 -10.6640 9.6355 26 1 5.9681 -10.8246 8.5932 27 6 3.7483 -3.9025 7.0732 28 1 2.8640 -3.6289 7.6488 29 6 3.4244 -4.5248 5.6982 30 7 3.0502 -1.0009 3.0589 31 8 2.8062 -0.1921 2.1940 32 1 -0.3633 0.5138 0.8899 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8899 37 1 1.6766 1.9563 0.8900 38 1 1.6766 -1.7489 -1.2493 39 1 1.6767 -0.2073 -2.1392 40 1 3.1300 -0.7216 -1.2490 41 1 1.2122 -2.7326 1.0384 42 1 3.3263 -1.3990 5.4935 43 1 4.7953 -1.9382 4.6373 44 1 6.8024 -2.5979 6.4894 45 1 6.0121 -3.7483 5.3675 46 1 6.6938 -4.0825 8.2876 47 1 6.6388 -5.3092 6.9905 48 1 4.0186 -6.4462 6.6567 49 1 3.7836 -9.7735 6.6786 50 1 4.2448 -5.1622 5.3687 51 1 2.4980 -5.0968 5.7509 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026312679.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:41 Heat of formation + Delta-G solvation = 38.383162 kcal Electronic energy + Delta-G solvation = -31247.388732 eV Core-core repulsion = 27150.206371 eV Total energy + Delta-G solvation = -4097.182361 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.25442 -40.42483 -38.44895 -37.75981 -35.16316 -34.05821 -33.24837 -31.16478 -30.96172 -29.29372 -28.39274 -27.85517 -27.77273 -25.85088 -24.69912 -23.39880 -23.34243 -22.74417 -21.11986 -19.73764 -18.89034 -18.78086 -17.94787 -17.39819 -17.23779 -16.91630 -15.81361 -15.46603 -15.09729 -14.90613 -14.71441 -14.52515 -14.44401 -13.98234 -13.87153 -13.45416 -13.14175 -12.94034 -12.84662 -12.80035 -12.59717 -12.48654 -12.24536 -12.15882 -11.98428 -11.60560 -11.57473 -11.56657 -11.32709 -11.26609 -10.81870 -10.68149 -10.59225 -10.54791 -10.43946 -10.27799 -10.15237 -10.03780 -9.79427 -9.65320 -9.60301 -8.89814 -8.49641 -6.95276 -5.74932 -3.04758 1.00763 1.52133 2.63815 2.88882 3.19439 3.44371 3.49761 3.52340 3.82862 4.02944 4.36228 4.39385 4.48683 4.59744 4.61143 4.78992 4.82760 4.95203 5.05686 5.08539 5.13793 5.21727 5.29206 5.38673 5.39853 5.45431 5.48439 5.52025 5.53749 5.58504 5.63417 5.65455 5.72086 5.77825 5.78485 5.82204 5.92851 5.97270 6.00348 6.07928 6.24585 6.35405 6.47095 6.50725 6.53879 6.67028 6.80660 7.10798 7.52968 7.72837 7.82678 8.14162 8.43169 9.54010 10.10854 10.44281 11.47404 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021037 B = 0.002300 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.679901 B =12170.392901 C =13084.138186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.016 3.984 3 C -0.147 4.147 4 C -0.143 4.143 5 C -0.025 4.025 6 C -0.178 4.178 7 C -0.014 4.014 8 C 0.604 3.396 9 O -0.520 6.520 10 N -0.599 5.599 11 C 0.111 3.889 12 C -0.103 4.103 13 H 0.104 0.896 14 C -0.115 4.115 15 C -0.145 4.145 16 C 0.183 3.817 17 H 0.055 0.945 18 N -0.726 5.726 19 C -0.241 4.241 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.930 5.930 23 Si 0.906 3.094 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.105 4.105 28 H 0.089 0.911 29 C 0.118 3.882 30 N -0.330 5.330 31 O 0.121 5.879 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.178 0.822 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.052 0.948 47 H 0.074 0.926 48 H 0.386 0.614 49 H 0.255 0.745 50 H 0.087 0.913 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 24.044 -14.281 28.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.015 3.985 3 C -0.205 4.205 4 C -0.200 4.200 5 C -0.089 4.089 6 C -0.200 4.200 7 C -0.173 4.173 8 C 0.389 3.611 9 O -0.395 6.395 10 N -0.332 5.332 11 C -0.012 4.012 12 C -0.122 4.122 13 H 0.122 0.878 14 C -0.152 4.152 15 C -0.186 4.186 16 C 0.072 3.928 17 H 0.073 0.927 18 N -0.368 5.368 19 C -0.372 4.372 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.125 4.125 28 H 0.107 0.893 29 C -0.003 4.003 30 N -0.031 5.031 31 O 0.046 5.954 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.196 0.804 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.093 0.907 48 H 0.222 0.778 49 H 0.065 0.935 50 H 0.105 0.895 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.272 23.732 -13.355 27.427 hybrid contribution -0.264 -1.386 -0.098 1.415 sum -3.536 22.346 -13.453 26.321 Atomic orbital electron populations 1.21955 0.91999 1.03104 1.02905 1.19189 0.96124 0.95305 0.87867 1.21908 1.01954 0.93682 1.02922 1.21959 1.01854 1.00747 0.95433 1.24418 0.96833 0.93573 0.94036 1.22348 1.04655 0.96762 0.96268 1.23492 1.01664 0.94370 0.97820 1.16473 0.79506 0.85294 0.79793 1.90841 1.45751 1.32375 1.70496 1.48368 1.48799 1.14826 1.21225 1.22078 0.95518 0.88226 0.95365 1.23221 0.96031 0.97706 0.95227 0.87810 1.22429 0.95214 0.97692 0.99913 1.22981 1.00245 0.97851 0.97515 1.20669 0.90377 0.85094 0.96616 0.92742 1.42711 1.73002 0.99224 1.21909 1.19283 1.32862 0.86332 0.98726 0.91078 1.24763 1.01550 0.97279 0.97333 1.69672 1.48085 1.17747 1.22337 0.86137 0.77579 0.82434 0.80143 1.20581 1.21905 1.21933 1.23226 0.98806 0.95089 0.95386 0.89270 1.22274 1.03240 0.87589 0.87243 1.74284 1.18411 1.00432 1.09968 1.84777 1.50939 1.35420 1.24263 0.91898 0.90997 0.91685 0.91701 0.91323 0.91718 0.91677 0.90988 0.91877 0.80423 0.91509 0.91146 0.92279 0.91881 0.92939 0.90741 0.77794 0.93478 0.89535 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.36 37.16 0.31 -0.42 16 2 C 0.02 0.10 0.94 -155.66 -0.15 -0.05 16 3 C -0.15 -0.73 8.07 37.16 0.30 -0.43 16 4 C -0.14 -0.75 8.36 37.16 0.31 -0.44 16 5 C -0.03 -0.24 5.76 -35.35 -0.20 -0.44 16 6 C -0.18 -2.06 10.40 -39.07 -0.41 -2.47 16 7 C -0.01 -0.21 7.03 -82.53 -0.58 -0.79 16 8 C 0.60 10.65 7.88 -12.11 -0.10 10.56 16 9 O -0.52 -10.83 17.20 5.37 0.09 -10.74 16 10 N -0.60 -10.01 3.32 -172.02 -0.57 -10.58 16 11 C 0.11 1.53 4.79 -3.19 -0.02 1.52 16 12 C -0.10 -1.38 4.25 -87.19 -0.37 -1.75 16 13 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 14 C -0.11 -1.65 5.59 -25.10 -0.14 -1.79 16 15 C -0.15 -2.51 6.56 -25.69 -0.17 -2.67 16 16 C 0.18 3.53 3.22 -67.10 -0.22 3.32 16 17 H 0.05 1.06 8.09 -51.93 -0.42 0.64 16 18 N -0.73 -17.89 4.80 -52.62 -0.25 -18.14 16 19 C -0.24 -6.63 9.95 -15.06 -0.15 -6.78 16 20 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 23 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 C -0.11 -1.74 4.03 -87.78 -0.35 -2.09 16 28 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 29 C 0.12 2.19 4.40 -2.87 -0.01 2.17 16 30 N -0.33 -4.34 9.72 33.29 0.32 -4.02 16 31 O 0.12 1.33 10.65 17.24 0.18 1.52 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.35 8.03 -51.93 -0.42 -0.06 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.36 8.02 -51.93 -0.42 -0.05 16 39 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.18 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.07 0.87 7.65 -51.93 -0.40 0.48 16 43 H 0.07 0.95 7.50 -51.93 -0.39 0.56 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.99 7.28 -51.93 -0.38 0.61 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.07 1.49 7.91 -51.93 -0.41 1.08 16 48 H 0.39 10.16 5.36 -40.82 -0.22 9.94 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 50 H 0.09 1.80 6.31 -51.93 -0.33 1.47 16 51 H 0.08 1.75 8.02 -51.93 -0.42 1.33 16 LS Contribution 402.66 15.07 6.07 6.07 Total: -1.00 -32.67 402.66 -8.90 -41.57 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -8.41 Total: 7.55 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -2.03 Total: -3.02 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.22 Total: -60.47 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.28 Total: -9.23 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.67 -8.90 -41.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026312679.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.954 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds