Wall clock time and date at job start Wed Apr 1 2020 05:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47361 * 2 1 4 4 C 1.53000 * 109.47089 * 240.00143 * 2 1 3 5 5 C 1.50701 * 109.46971 * 120.00235 * 2 1 3 6 6 C 1.35320 * 126.66493 * 60.28678 * 5 2 1 7 7 C 1.42273 * 103.91932 * 180.09007 * 6 5 2 8 8 C 1.48328 * 126.93496 * 179.91123 * 7 6 5 9 9 O 1.21495 * 120.00271 * 359.70528 * 8 7 6 10 10 N 1.34779 * 119.99547 * 179.70736 * 8 7 6 11 11 C 1.46901 * 125.61963 * 359.97088 * 10 8 7 12 12 C 1.54217 * 107.63439 * 178.51679 * 11 10 8 13 13 H 1.08998 * 113.72979 * 215.27962 * 12 11 10 14 14 C 1.54979 * 108.03054 * 87.01203 * 12 11 10 15 15 C 1.54132 * 104.56695 * 214.53821 * 14 12 11 16 16 C 1.53872 * 106.53977 * 24.51247 * 15 14 12 17 17 H 1.09000 * 109.91779 * 238.93636 * 16 15 14 18 18 N 1.46502 * 109.92063 * 117.82543 * 16 15 14 19 19 C 1.36936 * 119.99628 * 86.45577 * 18 16 15 20 20 H 1.08004 * 120.00231 * 359.97438 * 19 18 16 21 21 C 1.38819 * 119.99824 * 179.97438 * 19 18 16 22 22 N 1.31614 * 119.99795 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99712 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47487 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46867 * 120.00230 * 23 21 19 26 26 H 1.48505 * 109.46706 * 239.99395 * 23 21 19 27 27 C 1.53714 * 107.02923 * 358.28007 * 16 15 14 28 28 H 1.08997 * 112.96845 * 214.88141 * 27 16 15 29 29 C 1.47345 * 125.61683 * 180.02562 * 10 8 7 30 30 N 1.30988 * 106.12376 * 359.64679 * 7 6 5 31 31 O 1.20903 * 111.43982 * 0.22555 * 30 7 6 32 32 H 1.08995 * 109.47046 * 300.00028 * 1 2 3 33 33 H 1.09006 * 109.47154 * 59.99996 * 1 2 3 34 34 H 1.08994 * 109.47215 * 179.97438 * 1 2 3 35 35 H 1.08993 * 109.47510 * 179.97438 * 3 2 1 36 36 H 1.08994 * 109.47082 * 300.00454 * 3 2 1 37 37 H 1.09005 * 109.46697 * 59.99621 * 3 2 1 38 38 H 1.09002 * 109.46985 * 300.00192 * 4 2 1 39 39 H 1.09000 * 109.47001 * 60.00253 * 4 2 1 40 40 H 1.08999 * 109.47055 * 180.02562 * 4 2 1 41 41 H 1.07992 * 128.03782 * 359.96520 * 6 5 2 42 42 H 1.09006 * 109.82348 * 58.99502 * 11 10 8 43 43 H 1.08999 * 109.89737 * 298.08440 * 11 10 8 44 44 H 1.08998 * 110.44543 * 95.76032 * 14 12 11 45 45 H 1.09003 * 110.42209 * 333.29701 * 14 12 11 46 46 H 1.09002 * 110.05258 * 265.22682 * 15 14 12 47 47 H 1.09000 * 110.04775 * 143.79498 * 15 14 12 48 48 H 0.96999 * 120.00502 * 266.45224 * 18 16 15 49 49 H 0.97001 * 119.99605 * 180.02562 * 22 21 19 50 50 H 1.08994 * 110.30063 * 84.93590 * 29 10 8 51 51 H 1.09005 * 110.29785 * 322.80089 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.7944 -1.9975 1.5741 7 6 2.4870 -2.1563 2.8067 8 6 2.5616 -3.3842 3.6354 9 8 1.9867 -4.3935 3.2791 10 7 3.2672 -3.3802 4.7838 11 6 4.0070 -2.2344 5.3294 12 6 4.6273 -2.6747 6.6709 13 1 4.6556 -1.8847 7.4213 14 6 6.0010 -3.3274 6.3730 15 6 6.1351 -4.4458 7.4251 16 6 4.7044 -4.8258 7.8452 17 1 4.5802 -4.6761 8.9177 18 7 4.4387 -6.2252 7.5027 19 6 4.7833 -7.2214 8.3768 20 1 5.2513 -6.9754 9.3186 21 6 4.5310 -8.5473 8.0525 22 7 3.9602 -8.8470 6.9051 23 14 5.0004 -9.9061 9.2453 24 1 5.6222 -9.3101 10.4549 25 1 3.7845 -10.6640 9.6355 26 1 5.9681 -10.8246 8.5932 27 6 3.7483 -3.9025 7.0732 28 1 2.8640 -3.6289 7.6488 29 6 3.4244 -4.5248 5.6982 30 7 3.0502 -1.0009 3.0589 31 8 2.8062 -0.1921 2.1940 32 1 -0.3633 0.5138 0.8899 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8899 37 1 1.6766 1.9563 0.8900 38 1 1.6766 -1.7489 -1.2493 39 1 1.6767 -0.2073 -2.1392 40 1 3.1300 -0.7216 -1.2490 41 1 1.2122 -2.7326 1.0384 42 1 3.3263 -1.3990 5.4935 43 1 4.7953 -1.9382 4.6373 44 1 6.8024 -2.5979 6.4894 45 1 6.0121 -3.7483 5.3675 46 1 6.6938 -4.0825 8.2876 47 1 6.6388 -5.3092 6.9905 48 1 4.0186 -6.4462 6.6567 49 1 3.7836 -9.7735 6.6786 50 1 4.2448 -5.1622 5.3687 51 1 2.4980 -5.0968 5.7509 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026312679.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:40 Heat of formation + Delta-G solvation = 18.949189 kcal Electronic energy + Delta-G solvation = -31248.231452 eV Core-core repulsion = 27150.206371 eV Total energy + Delta-G solvation = -4098.025082 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.23845 -41.79909 -39.88306 -38.28733 -36.78283 -35.24581 -34.85720 -32.77648 -32.06187 -30.69483 -29.94752 -28.30224 -28.16457 -27.30864 -26.06329 -25.20485 -24.27786 -23.92107 -22.03135 -21.05012 -20.38704 -20.01154 -19.13893 -18.92747 -18.33224 -18.00806 -17.27991 -16.77504 -16.74091 -16.22650 -15.74207 -15.67566 -15.16539 -15.03585 -14.96721 -14.64027 -14.53778 -14.46191 -14.09384 -13.90337 -13.67903 -13.30353 -13.22436 -13.20673 -13.05958 -12.70678 -12.66580 -12.55172 -12.41697 -12.29409 -12.13305 -12.00952 -11.89096 -11.78598 -11.74193 -11.66174 -11.61444 -11.54028 -11.48455 -11.24419 -10.94613 -10.48863 -9.90646 -9.00744 -7.94467 -5.23481 -0.04470 0.57874 1.45256 1.46212 1.52481 1.56342 1.89080 1.90727 2.54961 2.70119 3.18871 3.29252 3.38031 3.47246 3.71295 3.79598 3.88569 3.91907 3.96454 4.11597 4.15137 4.21587 4.24318 4.31220 4.36128 4.38640 4.54482 4.60126 4.67507 4.70583 4.77423 4.78837 4.81833 4.82805 4.90296 4.99117 5.01854 5.02698 5.05088 5.09402 5.11250 5.20041 5.26922 5.30518 5.39727 5.44837 5.46089 5.49857 5.62759 6.19723 6.27664 6.67094 6.96131 7.32847 8.10279 8.30911 9.29410 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021037 B = 0.002300 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.679901 B =12170.392901 C =13084.138186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.018 3.982 3 C -0.147 4.147 4 C -0.143 4.143 5 C -0.002 4.002 6 C -0.191 4.191 7 C -0.039 4.039 8 C 0.597 3.403 9 O -0.567 6.567 10 N -0.599 5.599 11 C 0.113 3.887 12 C -0.081 4.081 13 H 0.146 0.854 14 C -0.107 4.107 15 C -0.138 4.138 16 C 0.174 3.826 17 H 0.059 0.941 18 N -0.741 5.741 19 C -0.233 4.233 20 H 0.081 0.919 21 C -0.082 4.082 22 N -0.974 5.974 23 Si 0.973 3.027 24 H -0.262 1.262 25 H -0.297 1.297 26 H -0.297 1.297 27 C -0.100 4.100 28 H 0.100 0.900 29 C 0.126 3.874 30 N -0.333 5.333 31 O 0.135 5.865 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.184 0.816 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.042 0.958 46 H 0.075 0.925 47 H 0.038 0.962 48 H 0.373 0.627 49 H 0.249 0.751 50 H 0.057 0.943 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.089 27.918 -14.194 31.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.016 3.984 3 C -0.204 4.204 4 C -0.200 4.200 5 C -0.065 4.065 6 C -0.214 4.214 7 C -0.197 4.197 8 C 0.385 3.615 9 O -0.445 6.445 10 N -0.331 5.331 11 C -0.009 4.009 12 C -0.100 4.100 13 H 0.164 0.836 14 C -0.145 4.145 15 C -0.178 4.178 16 C 0.065 3.935 17 H 0.077 0.923 18 N -0.382 5.382 19 C -0.365 4.365 20 H 0.099 0.901 21 C -0.274 4.274 22 N -0.625 5.625 23 Si 0.802 3.198 24 H -0.186 1.186 25 H -0.224 1.224 26 H -0.225 1.225 27 C -0.120 4.120 28 H 0.118 0.882 29 C 0.004 3.996 30 N -0.031 5.031 31 O 0.057 5.943 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.201 0.799 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.061 0.939 46 H 0.094 0.906 47 H 0.057 0.943 48 H 0.207 0.793 49 H 0.057 0.943 50 H 0.075 0.925 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.569 27.673 -13.209 30.771 hybrid contribution -0.469 -2.465 -0.190 2.517 sum -3.038 25.208 -13.398 28.709 Atomic orbital electron populations 1.21988 0.91012 1.03073 1.03903 1.19443 0.96760 0.95865 0.86289 1.21938 1.01820 0.92687 1.03987 1.21994 1.01579 1.00658 0.95811 1.25029 0.94768 0.92779 0.93963 1.22484 1.05204 0.98035 0.95685 1.23159 1.03954 0.93767 0.98784 1.16962 0.78736 0.85904 0.79923 1.90800 1.47686 1.34355 1.71648 1.48455 1.48784 1.15072 1.20837 1.22246 0.95760 0.87365 0.95519 1.23308 0.94062 0.96952 0.95676 0.83641 1.22381 0.97077 0.97317 0.97734 1.22786 0.98266 0.97683 0.99057 1.20983 0.92404 0.82876 0.97242 0.92290 1.42959 1.72937 1.01262 1.21081 1.19714 1.30772 0.87069 0.98938 0.90133 1.25600 1.02821 0.99842 0.99143 1.69855 1.50560 1.17543 1.24591 0.85073 0.76802 0.79321 0.78587 1.18568 1.22399 1.22453 1.23153 0.99373 0.95944 0.93497 0.88162 1.21935 1.00313 0.88093 0.89276 1.74247 1.18293 0.99951 1.10656 1.84753 1.50589 1.34758 1.24186 0.92248 0.88688 0.92300 0.91968 0.89155 0.91860 0.92314 0.88655 0.92377 0.79905 0.89886 0.90336 0.88758 0.93916 0.90609 0.94295 0.79324 0.94266 0.92511 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.36 71.98 0.60 -0.53 16 2 C 0.02 0.17 0.94 -52.93 -0.05 0.12 16 3 C -0.15 -1.01 8.07 71.98 0.58 -0.43 16 4 C -0.14 -1.18 8.36 71.98 0.60 -0.58 16 5 C 0.00 -0.04 5.76 25.01 0.14 0.11 16 6 C -0.19 -4.41 10.40 22.60 0.24 -4.18 16 7 C -0.04 -1.15 7.03 42.96 0.30 -0.85 16 8 C 0.60 22.10 7.88 86.93 0.68 22.78 16 9 O -0.57 -25.42 17.20 -3.70 -0.06 -25.49 16 10 N -0.60 -20.57 3.32 -816.45 -2.71 -23.29 16 11 C 0.11 2.90 4.79 86.72 0.42 3.31 16 12 C -0.08 -1.94 4.25 -8.57 -0.04 -1.98 16 13 H 0.15 2.43 8.14 -2.39 -0.02 2.41 16 14 C -0.11 -2.84 5.59 31.65 0.18 -2.67 16 15 C -0.14 -4.60 6.56 31.27 0.21 -4.39 16 16 C 0.17 6.65 3.22 45.53 0.15 6.80 16 17 H 0.06 2.21 8.09 -2.39 -0.02 2.19 16 18 N -0.74 -37.85 4.80 -320.39 -1.54 -39.38 16 19 C -0.23 -13.05 9.95 84.04 0.84 -12.21 16 20 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 21 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 22 N -0.97 -62.41 13.06 21.65 0.28 -62.13 16 23 Si 0.97 47.44 29.55 68.60 2.03 49.47 16 24 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 25 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 26 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 27 C -0.10 -3.24 4.03 -8.95 -0.04 -3.28 16 28 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 29 C 0.13 4.97 4.40 86.68 0.38 5.35 16 30 N -0.33 -8.35 9.72 -49.51 -0.48 -8.83 16 31 O 0.14 2.74 10.65 71.88 0.77 3.50 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.35 8.14 -2.38 -0.02 0.33 16 34 H 0.06 0.55 8.03 -2.39 -0.02 0.53 16 35 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 38 H 0.06 0.57 8.02 -2.39 -0.02 0.55 16 39 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.18 3.91 8.06 -2.91 -0.02 3.88 16 42 H 0.08 1.93 7.65 -2.38 -0.02 1.91 16 43 H 0.08 1.95 7.50 -2.39 -0.02 1.93 16 44 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.04 1.31 7.28 -2.39 -0.02 1.30 16 46 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.04 1.57 7.91 -2.39 -0.02 1.56 16 48 H 0.37 20.91 5.36 -92.71 -0.50 20.41 16 49 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 50 H 0.06 2.56 6.31 -2.39 -0.02 2.55 16 51 H 0.05 2.26 8.02 -2.38 -0.02 2.24 16 Total: -1.00 -75.90 402.66 4.37 -71.54 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: 0.43 Total: 31.62 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 5.66 Total: 2.98 kcal Atomic # 7 Polarization: -129.18 SS G_CDS: -4.45 Total: -133.63 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: 0.70 Total: -21.98 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -75.90 4.37 -71.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026312679.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.485 kcal (2) G-P(sol) polarization free energy of solvation -75.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds