Wall clock time and date at job start Wed Apr 1 2020 05:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47089 * 2 1 4 4 C 1.52995 * 109.47292 * 239.99427 * 2 1 3 5 5 C 1.50700 * 109.46861 * 119.99813 * 2 1 3 6 6 O 1.34260 * 126.52673 * 242.10542 * 5 2 1 7 7 C 1.34042 * 108.22677 * 180.26281 * 6 5 2 8 8 N 1.29934 * 109.24554 * 359.72814 * 7 6 5 9 9 C 1.36067 * 108.47670 * 0.02562 * 8 7 6 10 10 C 1.47416 * 126.44869 * 179.97438 * 9 8 7 11 11 O 1.21614 * 120.00264 * 175.12441 * 10 9 8 12 12 N 1.34772 * 120.00149 * 355.12744 * 10 9 8 13 13 C 1.49216 * 126.06131 * 0.02562 * 12 10 9 14 14 C 1.50351 * 104.86461 * 172.91538 * 13 12 10 15 15 H 1.08999 * 109.73874 * 279.05019 * 14 13 12 16 16 C 1.51015 * 125.53727 * 144.29914 * 14 13 12 17 17 C 1.57466 * 101.09930 * 203.44007 * 16 14 13 18 18 C 1.55948 * 105.70067 * 25.60132 * 17 16 14 19 19 H 1.08994 * 110.49166 * 248.48173 * 18 17 16 20 20 N 1.46504 * 110.60836 * 125.87573 * 18 17 16 21 21 C 1.36931 * 120.00048 * 90.19516 * 20 18 17 22 22 H 1.07997 * 120.00037 * 0.02562 * 21 20 18 23 23 C 1.38816 * 120.00118 * 179.97438 * 21 20 18 24 24 N 1.31626 * 119.99751 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00176 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46833 * 60.00506 * 25 23 21 27 27 H 1.48500 * 109.46975 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47462 * 300.00661 * 25 23 21 29 29 C 1.50284 * 104.15265 * 7.15129 * 18 17 16 30 30 H 1.08998 * 109.99395 * 80.47627 * 29 18 17 31 31 C 1.49696 * 126.06183 * 179.97438 * 12 10 9 32 32 H 1.08998 * 109.47086 * 308.54802 * 1 2 3 33 33 H 1.09003 * 109.46706 * 68.54177 * 1 2 3 34 34 H 1.08997 * 109.47226 * 188.54571 * 1 2 3 35 35 H 1.09001 * 109.46686 * 179.97438 * 3 2 1 36 36 H 1.08996 * 109.47012 * 299.99436 * 3 2 1 37 37 H 1.08994 * 109.47209 * 59.99583 * 3 2 1 38 38 H 1.09000 * 109.47168 * 291.65326 * 4 2 1 39 39 H 1.09006 * 109.46964 * 51.65025 * 4 2 1 40 40 H 1.08996 * 109.47144 * 171.64905 * 4 2 1 41 41 H 1.08007 * 125.37650 * 179.76855 * 7 6 5 42 42 H 1.09005 * 110.35950 * 54.06972 * 13 12 10 43 43 H 1.09001 * 110.35920 * 291.76505 * 13 12 10 44 44 H 1.09001 * 110.99830 * 322.08179 * 16 14 13 45 45 H 1.08996 * 111.00093 * 85.92348 * 16 14 13 46 46 H 1.09002 * 110.56437 * 266.37639 * 17 16 14 47 47 H 1.08997 * 109.90105 * 144.47836 * 17 16 14 48 48 H 0.97001 * 119.99209 * 270.20006 * 20 18 17 49 49 H 0.96998 * 119.99696 * 179.97438 * 24 23 21 50 50 H 1.09004 * 110.84889 * 36.68872 * 31 12 10 51 51 H 1.09005 * 110.84675 * 273.07761 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2305 6 8 2.7746 -0.1772 2.2140 7 6 3.0179 -1.1335 3.1212 8 7 2.4502 -2.2388 2.7411 9 6 1.8172 -2.0137 1.5579 10 6 1.0483 -2.9980 0.7749 11 8 0.4541 -2.6478 -0.2267 12 7 1.0037 -4.2860 1.1691 13 6 1.6777 -4.8609 2.3698 14 6 1.1731 -6.2746 2.4554 15 1 0.1896 -6.2866 2.9253 16 6 1.9788 -7.4682 2.9101 17 6 1.1953 -8.6449 2.2164 18 6 0.4960 -8.0119 0.9746 19 1 -0.5850 -7.9944 1.1131 20 7 0.8439 -8.7473 -0.2438 21 6 0.0701 -9.8006 -0.6522 22 1 -0.7970 -10.0889 -0.0765 23 6 0.3994 -10.4971 -1.8069 24 7 1.4558 -10.1454 -2.5089 25 14 -0.6566 -11.9335 -2.3646 26 1 -2.0426 -11.4617 -2.6133 27 1 -0.0955 -12.5041 -3.6155 28 1 -0.6711 -12.9769 -1.3080 29 6 1.0420 -6.6129 0.9188 30 1 2.0279 -6.6159 0.4539 31 6 0.2683 -5.3933 0.4806 32 1 -0.3633 0.6404 0.8037 33 1 -0.3633 0.3760 -0.9565 34 1 -0.3633 -1.0162 0.1527 35 1 3.1301 1.4424 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6767 1.9564 0.8899 38 1 1.8037 -1.7830 -1.1776 39 1 1.5600 -0.3010 -2.1329 40 1 3.1198 -0.5939 -1.3269 41 1 3.5943 -1.0054 4.0256 42 1 1.3989 -4.3039 3.2643 43 1 2.7597 -4.8518 2.2381 44 1 3.0072 -7.4035 2.5547 45 1 1.9477 -7.5702 3.9948 46 1 0.4513 -9.0620 2.8951 47 1 1.8935 -9.4200 1.9005 48 1 1.6225 -8.4881 -0.7610 49 1 1.6862 -10.6323 -3.3156 50 1 0.3128 -5.2742 -0.6020 51 1 -0.7649 -5.4451 0.8240 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026394655.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:25 Heat of formation + Delta-G solvation = 22.311857 kcal Electronic energy + Delta-G solvation = -31734.346461 eV Core-core repulsion = 27636.467196 eV Total energy + Delta-G solvation = -4097.879265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.71227 -40.41336 -38.81757 -36.99907 -35.26701 -34.94155 -33.33199 -30.88302 -30.29104 -29.23638 -28.40378 -27.50765 -27.38318 -25.53850 -24.46291 -23.18487 -23.05295 -22.41311 -20.38148 -20.13376 -19.23534 -19.08250 -17.78603 -17.08719 -16.97605 -16.37606 -16.17712 -15.44252 -15.30998 -14.83160 -14.72007 -14.51090 -14.27046 -13.91967 -13.70429 -13.66905 -13.59589 -12.82261 -12.73513 -12.54281 -12.31554 -12.18484 -11.98777 -11.87966 -11.71266 -11.48351 -11.39631 -11.26547 -11.24887 -11.15287 -11.04693 -10.77406 -10.74775 -10.62095 -10.39464 -10.16072 -10.07003 -9.82128 -9.72311 -9.51297 -9.14537 -8.89385 -8.48935 -6.95709 -5.75790 -3.04839 0.93589 1.87625 2.29391 2.88440 3.23614 3.44924 3.49547 3.50366 3.79125 4.15739 4.25100 4.50269 4.59703 4.68998 4.70984 4.85515 4.98475 5.16355 5.27335 5.35520 5.36041 5.43582 5.44385 5.52281 5.56885 5.59500 5.65055 5.67723 5.68131 5.78024 5.79665 5.83219 5.88133 5.94158 5.96423 6.00353 6.03051 6.14940 6.17290 6.23718 6.31678 6.35025 6.38585 6.46466 6.53849 6.69468 6.81514 7.08320 7.23605 7.55546 7.71048 8.14486 8.42479 9.53657 10.10737 10.45256 11.46609 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.002588 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.376462 B =10815.736642 C =11989.454529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.023 3.977 3 C -0.145 4.145 4 C -0.154 4.154 5 C 0.055 3.945 6 O -0.197 6.197 7 C 0.165 3.835 8 N -0.456 5.456 9 C -0.068 4.068 10 C 0.609 3.391 11 O -0.525 6.525 12 N -0.606 5.606 13 C 0.135 3.865 14 C -0.131 4.131 15 H 0.079 0.921 16 C -0.096 4.096 17 C -0.143 4.143 18 C 0.196 3.804 19 H 0.056 0.944 20 N -0.720 5.720 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.933 5.933 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.286 1.286 29 C -0.119 4.119 30 H 0.081 0.919 31 C 0.130 3.870 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.049 0.951 41 H 0.253 0.747 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.384 0.616 49 H 0.256 0.744 50 H 0.085 0.915 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 22.497 12.585 25.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.022 3.978 3 C -0.202 4.202 4 C -0.211 4.211 5 C -0.001 4.001 6 O -0.083 6.083 7 C -0.064 4.064 8 N -0.185 5.185 9 C -0.188 4.188 10 C 0.398 3.602 11 O -0.404 6.404 12 N -0.339 5.339 13 C 0.013 3.987 14 C -0.151 4.151 15 H 0.098 0.902 16 C -0.135 4.135 17 C -0.184 4.184 18 C 0.085 3.915 19 H 0.074 0.926 20 N -0.360 5.360 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.139 4.139 30 H 0.100 0.900 31 C 0.010 3.990 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.269 0.731 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.218 0.782 49 H 0.065 0.935 50 H 0.103 0.897 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.875 22.053 12.298 25.413 hybrid contribution 0.010 -0.117 -0.450 0.465 sum 2.884 21.936 11.848 25.097 Atomic orbital electron populations 1.22187 0.91507 1.05363 1.01899 1.19240 0.96811 0.94274 0.87444 1.21935 1.01352 0.94374 1.02579 1.22188 0.99969 1.04205 0.94716 1.23882 0.93048 0.92510 0.90704 1.84363 1.54631 1.41340 1.27978 1.28038 1.01357 0.80986 0.95991 1.70861 1.10310 1.26621 1.10725 1.21396 1.07390 0.94136 0.95891 1.16296 0.80199 0.80286 0.83469 1.90679 1.46044 1.77922 1.25760 1.49625 1.49868 1.06928 1.27438 1.21271 0.97092 0.92894 0.87431 1.22253 1.01266 0.93419 0.98125 0.90250 1.21912 0.98564 0.93685 0.99305 1.23989 0.99235 0.97372 0.97800 1.20093 0.96865 0.87069 0.87488 0.92598 1.42488 1.32740 1.35816 1.24943 1.19201 1.06187 1.06149 1.05616 0.91204 1.24743 0.98213 0.99912 0.97990 1.69653 1.27448 1.42870 1.18094 0.86287 0.79707 0.82498 0.77797 1.21261 1.21748 1.21302 1.22525 1.01179 0.95149 0.95032 0.90017 1.21576 0.95002 0.84274 0.98157 0.93373 0.91336 0.88546 0.92259 0.91334 0.92271 0.88743 0.91235 0.93227 0.73146 0.90217 0.91337 0.91574 0.92245 0.92616 0.90877 0.78167 0.93461 0.89656 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.19 37.16 0.30 -1.32 16 2 C 0.02 0.24 0.75 -155.66 -0.12 0.12 16 3 C -0.15 -1.17 8.05 37.16 0.30 -0.88 16 4 C -0.15 -1.73 8.17 37.16 0.30 -1.42 16 5 C 0.06 0.64 5.73 -35.08 -0.20 0.44 16 6 O -0.20 -1.93 10.19 6.52 0.07 -1.87 16 7 C 0.16 1.36 13.19 51.96 0.69 2.04 16 8 N -0.46 -5.29 8.92 -11.48 -0.10 -5.39 16 9 C -0.07 -0.91 6.62 -83.02 -0.55 -1.46 16 10 C 0.61 9.24 7.23 -12.53 -0.09 9.15 16 11 O -0.52 -8.56 10.60 5.26 0.06 -8.50 16 12 N -0.61 -9.00 3.43 -172.81 -0.59 -9.59 16 13 C 0.13 1.76 5.47 -3.86 -0.02 1.74 16 14 C -0.13 -1.75 2.75 -90.26 -0.25 -2.00 16 15 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 16 C -0.10 -1.29 6.78 -25.29 -0.17 -1.46 16 17 C -0.14 -2.38 6.77 -22.72 -0.15 -2.54 16 18 C 0.20 3.72 3.40 -67.71 -0.23 3.49 16 19 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 20 N -0.72 -17.55 5.11 -53.21 -0.27 -17.82 16 21 C -0.24 -6.54 9.96 -15.06 -0.15 -6.69 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 25 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 C -0.12 -1.94 2.42 -90.33 -0.22 -2.15 16 30 H 0.08 1.46 7.92 -51.93 -0.41 1.05 16 31 C 0.13 2.07 6.80 -3.30 -0.02 2.04 16 32 H 0.05 0.46 8.13 -51.93 -0.42 0.04 16 33 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 34 H 0.10 1.28 4.72 -51.93 -0.25 1.04 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 1.33 4.56 -51.93 -0.24 1.09 16 39 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 40 H 0.05 0.51 8.13 -51.93 -0.42 0.09 16 41 H 0.25 0.72 8.06 -52.48 -0.42 0.30 16 42 H 0.08 0.99 7.26 -51.93 -0.38 0.62 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.07 1.39 7.98 -51.93 -0.41 0.97 16 48 H 0.38 10.08 7.67 -40.82 -0.31 9.77 16 49 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 50 H 0.09 1.49 8.10 -51.93 -0.42 1.07 16 51 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 396.14 15.07 5.97 5.97 Total: -1.00 -31.48 396.14 -8.14 -39.62 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -8.29 Total: 8.94 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -0.68 Total: -1.34 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -0.24 Total: -60.10 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.12 Total: -10.37 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.48 -8.14 -39.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026394655.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.936 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds