Wall clock time and date at job start Wed Apr 1 2020 05:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47089 * 2 1 4 4 C 1.52995 * 109.47292 * 239.99427 * 2 1 3 5 5 C 1.50700 * 109.46861 * 119.99813 * 2 1 3 6 6 O 1.34260 * 126.52673 * 242.10542 * 5 2 1 7 7 C 1.34042 * 108.22677 * 180.26281 * 6 5 2 8 8 N 1.29934 * 109.24554 * 359.72814 * 7 6 5 9 9 C 1.36067 * 108.47670 * 0.02562 * 8 7 6 10 10 C 1.47416 * 126.44869 * 179.97438 * 9 8 7 11 11 O 1.21614 * 120.00264 * 175.12441 * 10 9 8 12 12 N 1.34772 * 120.00149 * 355.12744 * 10 9 8 13 13 C 1.49216 * 126.06131 * 0.02562 * 12 10 9 14 14 C 1.50351 * 104.86461 * 172.91538 * 13 12 10 15 15 H 1.08999 * 109.73874 * 279.05019 * 14 13 12 16 16 C 1.51015 * 125.53727 * 144.29914 * 14 13 12 17 17 C 1.57466 * 101.09930 * 203.44007 * 16 14 13 18 18 C 1.55948 * 105.70067 * 25.60132 * 17 16 14 19 19 H 1.08994 * 110.49166 * 248.48173 * 18 17 16 20 20 N 1.46504 * 110.60836 * 125.87573 * 18 17 16 21 21 C 1.36931 * 120.00048 * 90.19516 * 20 18 17 22 22 H 1.07997 * 120.00037 * 0.02562 * 21 20 18 23 23 C 1.38816 * 120.00118 * 179.97438 * 21 20 18 24 24 N 1.31626 * 119.99751 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00176 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46833 * 60.00506 * 25 23 21 27 27 H 1.48500 * 109.46975 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47462 * 300.00661 * 25 23 21 29 29 C 1.50284 * 104.15265 * 7.15129 * 18 17 16 30 30 H 1.08998 * 109.99395 * 80.47627 * 29 18 17 31 31 C 1.49696 * 126.06183 * 179.97438 * 12 10 9 32 32 H 1.08998 * 109.47086 * 308.54802 * 1 2 3 33 33 H 1.09003 * 109.46706 * 68.54177 * 1 2 3 34 34 H 1.08997 * 109.47226 * 188.54571 * 1 2 3 35 35 H 1.09001 * 109.46686 * 179.97438 * 3 2 1 36 36 H 1.08996 * 109.47012 * 299.99436 * 3 2 1 37 37 H 1.08994 * 109.47209 * 59.99583 * 3 2 1 38 38 H 1.09000 * 109.47168 * 291.65326 * 4 2 1 39 39 H 1.09006 * 109.46964 * 51.65025 * 4 2 1 40 40 H 1.08996 * 109.47144 * 171.64905 * 4 2 1 41 41 H 1.08007 * 125.37650 * 179.76855 * 7 6 5 42 42 H 1.09005 * 110.35950 * 54.06972 * 13 12 10 43 43 H 1.09001 * 110.35920 * 291.76505 * 13 12 10 44 44 H 1.09001 * 110.99830 * 322.08179 * 16 14 13 45 45 H 1.08996 * 111.00093 * 85.92348 * 16 14 13 46 46 H 1.09002 * 110.56437 * 266.37639 * 17 16 14 47 47 H 1.08997 * 109.90105 * 144.47836 * 17 16 14 48 48 H 0.97001 * 119.99209 * 270.20006 * 20 18 17 49 49 H 0.96998 * 119.99696 * 179.97438 * 24 23 21 50 50 H 1.09004 * 110.84889 * 36.68872 * 31 12 10 51 51 H 1.09005 * 110.84675 * 273.07761 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2305 6 8 2.7746 -0.1772 2.2140 7 6 3.0179 -1.1335 3.1212 8 7 2.4502 -2.2388 2.7411 9 6 1.8172 -2.0137 1.5579 10 6 1.0483 -2.9980 0.7749 11 8 0.4541 -2.6478 -0.2267 12 7 1.0037 -4.2860 1.1691 13 6 1.6777 -4.8609 2.3698 14 6 1.1731 -6.2746 2.4554 15 1 0.1896 -6.2866 2.9253 16 6 1.9788 -7.4682 2.9101 17 6 1.1953 -8.6449 2.2164 18 6 0.4960 -8.0119 0.9746 19 1 -0.5850 -7.9944 1.1131 20 7 0.8439 -8.7473 -0.2438 21 6 0.0701 -9.8006 -0.6522 22 1 -0.7970 -10.0889 -0.0765 23 6 0.3994 -10.4971 -1.8069 24 7 1.4558 -10.1454 -2.5089 25 14 -0.6566 -11.9335 -2.3646 26 1 -2.0426 -11.4617 -2.6133 27 1 -0.0955 -12.5041 -3.6155 28 1 -0.6711 -12.9769 -1.3080 29 6 1.0420 -6.6129 0.9188 30 1 2.0279 -6.6159 0.4539 31 6 0.2683 -5.3933 0.4806 32 1 -0.3633 0.6404 0.8037 33 1 -0.3633 0.3760 -0.9565 34 1 -0.3633 -1.0162 0.1527 35 1 3.1301 1.4424 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6767 1.9564 0.8899 38 1 1.8037 -1.7830 -1.1776 39 1 1.5600 -0.3010 -2.1329 40 1 3.1198 -0.5939 -1.3269 41 1 3.5943 -1.0054 4.0256 42 1 1.3989 -4.3039 3.2643 43 1 2.7597 -4.8518 2.2381 44 1 3.0072 -7.4035 2.5547 45 1 1.9477 -7.5702 3.9948 46 1 0.4513 -9.0620 2.8951 47 1 1.8935 -9.4200 1.9005 48 1 1.6225 -8.4881 -0.7610 49 1 1.6862 -10.6323 -3.3156 50 1 0.3128 -5.2742 -0.6020 51 1 -0.7649 -5.4451 0.8240 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026394655.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:24 Heat of formation + Delta-G solvation = 1.858803 kcal Electronic energy + Delta-G solvation = -31735.233372 eV Core-core repulsion = 27636.467196 eV Total energy + Delta-G solvation = -4098.766176 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.50279 -41.64744 -39.98110 -37.87860 -36.69536 -35.84302 -35.01182 -32.67425 -31.33426 -30.35957 -29.78065 -28.25966 -28.22247 -27.09421 -25.57507 -24.89358 -23.86903 -23.57968 -21.42919 -21.31480 -20.48581 -20.11997 -19.16462 -18.68477 -17.81329 -17.63044 -17.18622 -16.57792 -16.43376 -16.16142 -15.84537 -15.62392 -15.46177 -15.34891 -15.08765 -14.73798 -14.46613 -14.40982 -14.06843 -13.60542 -13.28566 -13.21024 -13.16456 -13.03127 -12.93301 -12.70198 -12.58982 -12.53877 -12.43729 -12.23574 -12.19695 -12.15919 -12.04805 -12.01209 -11.79156 -11.58840 -11.52485 -11.35123 -10.99908 -10.93749 -10.80774 -10.03438 -9.62931 -8.98193 -7.92304 -5.20493 0.05020 1.08299 1.47411 1.49030 1.50476 1.56226 1.81618 2.19597 2.57586 2.92059 3.11873 3.41016 3.41570 3.63492 3.69857 3.85287 3.91403 3.94828 4.05373 4.06977 4.24735 4.29040 4.44630 4.48731 4.53093 4.54144 4.59186 4.70087 4.71906 4.73740 4.75770 4.78206 4.84225 4.92018 4.94200 4.94807 4.97113 5.00646 5.08639 5.15717 5.20864 5.21367 5.29808 5.36680 5.40338 5.49111 5.50091 5.52434 5.63896 6.29572 6.35017 6.51191 7.02068 7.35268 8.11843 8.34372 9.31145 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.002588 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.376462 B =10815.736642 C =11989.454529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.020 3.980 3 C -0.138 4.138 4 C -0.151 4.151 5 C 0.054 3.946 6 O -0.194 6.194 7 C 0.191 3.809 8 N -0.485 5.485 9 C -0.091 4.091 10 C 0.600 3.400 11 O -0.544 6.544 12 N -0.611 5.611 13 C 0.145 3.855 14 C -0.110 4.110 15 H 0.091 0.909 16 C -0.083 4.083 17 C -0.136 4.136 18 C 0.188 3.812 19 H 0.053 0.947 20 N -0.734 5.734 21 C -0.236 4.236 22 H 0.077 0.923 23 C -0.078 4.078 24 N -0.972 5.972 25 Si 0.970 3.030 26 H -0.279 1.279 27 H -0.299 1.299 28 H -0.276 1.276 29 C -0.119 4.119 30 H 0.061 0.939 31 C 0.135 3.865 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.305 0.695 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.092 0.908 46 H 0.071 0.929 47 H 0.046 0.954 48 H 0.370 0.630 49 H 0.249 0.751 50 H 0.058 0.942 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.466 24.253 15.483 28.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 C -0.195 4.195 4 C -0.208 4.208 5 C -0.003 4.003 6 O -0.080 6.080 7 C -0.037 4.037 8 N -0.214 5.214 9 C -0.210 4.210 10 C 0.389 3.611 11 O -0.425 6.425 12 N -0.344 5.344 13 C 0.024 3.976 14 C -0.129 4.129 15 H 0.110 0.890 16 C -0.121 4.121 17 C -0.177 4.177 18 C 0.079 3.921 19 H 0.072 0.928 20 N -0.373 5.373 21 C -0.368 4.368 22 H 0.095 0.905 23 C -0.270 4.270 24 N -0.623 5.623 25 Si 0.800 3.200 26 H -0.205 1.205 27 H -0.225 1.225 28 H -0.203 1.203 29 C -0.139 4.139 30 H 0.080 0.920 31 C 0.013 3.987 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.320 0.680 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.111 0.889 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.202 0.798 49 H 0.058 0.942 50 H 0.076 0.924 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.021 23.817 15.259 28.447 hybrid contribution -0.035 -0.572 -1.277 1.400 sum 2.986 23.245 13.982 27.290 Atomic orbital electron populations 1.22112 0.91910 1.03769 1.02781 1.19288 0.96515 0.95610 0.86609 1.21890 1.01514 0.92539 1.03594 1.22121 1.00488 1.02370 0.95847 1.23984 0.92965 0.92104 0.91265 1.84398 1.54264 1.41524 1.27838 1.29241 0.99006 0.79482 0.95969 1.70810 1.11761 1.28322 1.10479 1.21163 1.08582 0.94280 0.96956 1.16701 0.80223 0.80593 0.83536 1.90676 1.46827 1.78342 1.26672 1.49653 1.50099 1.06737 1.27901 1.21258 0.96798 0.92386 0.87155 1.22220 1.01987 0.93631 0.95057 0.89021 1.21833 0.97809 0.91592 1.00880 1.23790 0.99167 0.97835 0.96905 1.20358 0.97067 0.88151 0.86552 0.92849 1.42691 1.32053 1.35877 1.26657 1.19608 1.05976 1.06073 1.05132 0.90472 1.25543 0.99797 1.02981 0.98680 1.69821 1.29505 1.44382 1.18573 0.85253 0.78152 0.79593 0.77032 1.20537 1.22501 1.20255 1.22284 0.99764 0.93929 0.97894 0.92044 1.21401 0.95590 0.84849 0.96831 0.92245 0.90513 0.91398 0.91908 0.90072 0.91530 0.91883 0.90359 0.92625 0.68045 0.88772 0.91503 0.91703 0.88924 0.91063 0.93531 0.79781 0.94205 0.92392 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.19 71.98 0.59 -2.53 16 2 C 0.02 0.41 0.75 -52.93 -0.04 0.37 16 3 C -0.14 -1.93 8.05 71.98 0.58 -1.35 16 4 C -0.15 -3.42 8.17 71.98 0.59 -2.83 16 5 C 0.05 1.20 5.73 25.19 0.14 1.34 16 6 O -0.19 -3.26 10.19 0.42 0.00 -3.25 16 7 C 0.19 2.47 13.19 130.52 1.72 4.20 16 8 N -0.49 -10.19 8.92 -305.16 -2.72 -12.91 16 9 C -0.09 -2.37 6.62 40.41 0.27 -2.10 16 10 C 0.60 18.69 7.23 86.66 0.63 19.32 16 11 O -0.54 -18.77 10.60 -4.08 -0.04 -18.82 16 12 N -0.61 -18.40 3.43 -818.90 -2.81 -21.20 16 13 C 0.14 3.59 5.47 85.00 0.46 4.05 16 14 C -0.11 -2.74 2.75 -10.56 -0.03 -2.77 16 15 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 16 C -0.08 -2.03 6.78 31.52 0.21 -1.81 16 17 C -0.14 -4.42 6.77 33.19 0.22 -4.19 16 18 C 0.19 7.21 3.40 45.13 0.15 7.36 16 19 H 0.05 2.07 8.09 -2.39 -0.02 2.05 16 20 N -0.73 -37.00 5.11 -322.26 -1.65 -38.64 16 21 C -0.24 -13.08 9.96 84.04 0.84 -12.24 16 22 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 23 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 24 N -0.97 -60.48 13.06 21.65 0.28 -60.19 16 25 Si 0.97 46.64 29.55 68.60 2.03 48.66 16 26 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 27 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 28 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 29 C -0.12 -3.94 2.42 -10.61 -0.03 -3.97 16 30 H 0.06 2.30 7.92 -2.39 -0.02 2.28 16 31 C 0.13 4.44 6.80 85.08 0.58 5.02 16 32 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 33 H 0.08 1.42 8.07 -2.39 -0.02 1.40 16 34 H 0.07 1.86 4.72 -2.39 -0.01 1.85 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.06 1.87 4.56 -2.39 -0.01 1.86 16 39 H 0.08 1.56 8.08 -2.38 -0.02 1.54 16 40 H 0.05 1.14 8.13 -2.39 -0.02 1.12 16 41 H 0.30 0.08 8.06 -2.91 -0.02 0.06 16 42 H 0.09 2.11 7.26 -2.38 -0.02 2.10 16 43 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 44 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.05 1.76 7.98 -2.39 -0.02 1.75 16 48 H 0.37 20.45 7.67 -92.71 -0.71 19.74 16 49 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 50 H 0.06 2.19 8.10 -2.39 -0.02 2.17 16 51 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 Total: -1.00 -71.76 396.14 2.68 -69.08 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: 0.22 Total: 33.48 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 7.36 Total: 3.80 kcal Atomic # 7 Polarization: -126.06 SS G_CDS: -6.89 Total: -132.95 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.04 Total: -22.07 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -71.76 2.68 -69.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026394655.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.936 kcal (2) G-P(sol) polarization free energy of solvation -71.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds