Wall clock time and date at job start Wed Apr 1 2020 05:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47160 * 239.99540 * 2 1 3 5 5 C 1.50699 * 109.46975 * 120.00115 * 2 1 3 6 6 O 1.34261 * 126.52805 * 242.06004 * 5 2 1 7 7 C 1.34045 * 108.23008 * 180.22892 * 6 5 2 8 8 N 1.29936 * 109.24526 * 359.76854 * 7 6 5 9 9 C 1.36078 * 108.47509 * 0.02562 * 8 7 6 10 10 C 1.47415 * 126.44567 * 179.97438 * 9 8 7 11 11 O 1.21611 * 119.99800 * 175.10365 * 10 9 8 12 12 N 1.34773 * 120.00636 * 355.09271 * 10 9 8 13 13 C 1.46914 * 125.61308 * 359.97438 * 12 10 9 14 14 C 1.54206 * 107.63185 * 178.51271 * 13 12 10 15 15 H 1.09004 * 114.47784 * 214.84087 * 14 13 12 16 16 C 1.54849 * 108.04793 * 87.00178 * 14 13 12 17 17 C 1.54131 * 104.63146 * 214.54234 * 16 14 13 18 18 C 1.53867 * 106.49627 * 24.49979 * 17 16 14 19 19 H 1.09001 * 109.92174 * 238.95710 * 18 17 16 20 20 N 1.46499 * 110.09113 * 117.74088 * 18 17 16 21 21 C 1.36938 * 120.00017 * 86.92439 * 20 18 17 22 22 H 1.08001 * 119.99675 * 359.97438 * 21 20 18 23 23 C 1.38807 * 120.00061 * 180.02562 * 21 20 18 24 24 N 1.31616 * 120.00556 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00061 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47314 * 89.99795 * 25 23 21 27 27 H 1.48503 * 109.47272 * 209.99844 * 25 23 21 28 28 H 1.48504 * 109.46978 * 329.99980 * 25 23 21 29 29 C 1.53709 * 107.02965 * 358.30546 * 18 17 16 30 30 H 1.09001 * 112.96452 * 214.87943 * 29 18 17 31 31 C 1.47338 * 125.62268 * 180.02562 * 12 10 9 32 32 H 1.09002 * 109.46861 * 308.54278 * 1 2 3 33 33 H 1.08999 * 109.46723 * 68.53661 * 1 2 3 34 34 H 1.08998 * 109.46992 * 188.54268 * 1 2 3 35 35 H 1.09005 * 109.47104 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.47160 * 299.99658 * 3 2 1 37 37 H 1.09001 * 109.47520 * 59.99720 * 3 2 1 38 38 H 1.08998 * 109.46991 * 291.65287 * 4 2 1 39 39 H 1.08998 * 109.46451 * 51.64916 * 4 2 1 40 40 H 1.08993 * 109.47327 * 171.64724 * 4 2 1 41 41 H 1.07998 * 125.37990 * 179.73224 * 7 6 5 42 42 H 1.08996 * 109.82401 * 58.98743 * 13 12 10 43 43 H 1.08997 * 109.82067 * 298.03727 * 13 12 10 44 44 H 1.08996 * 110.40323 * 333.33468 * 16 14 13 45 45 H 1.09005 * 110.40290 * 95.63359 * 16 14 13 46 46 H 1.09001 * 110.05223 * 265.23940 * 17 16 14 47 47 H 1.09000 * 110.04879 * 143.76320 * 17 16 14 48 48 H 0.97004 * 120.00289 * 266.92660 * 20 18 17 49 49 H 0.96998 * 120.00516 * 180.02562 * 24 23 21 50 50 H 1.08999 * 110.29885 * 84.94759 * 31 12 10 51 51 H 1.09007 * 110.29879 * 322.80736 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2304 6 8 2.7753 -0.1775 2.2136 7 6 3.0178 -1.1336 3.1213 8 7 2.4496 -2.2387 2.7415 9 6 1.8171 -2.0137 1.5578 10 6 1.0478 -2.9979 0.7751 11 8 0.4539 -2.6477 -0.2267 12 7 1.0029 -4.2859 1.1693 13 6 1.6715 -4.8419 2.3535 14 6 1.3140 -6.3400 2.4314 15 1 1.2038 -6.7258 3.4449 16 6 2.3387 -7.1230 1.5744 17 6 1.5310 -8.2882 0.9698 18 6 0.0610 -7.8342 0.9449 19 1 -0.5502 -8.5229 1.5282 20 7 -0.4261 -7.7814 -0.4357 21 6 -0.9466 -8.9044 -1.0215 22 1 -0.9976 -9.8291 -0.4658 23 6 -1.4077 -8.8545 -2.3298 24 7 -1.3442 -7.7281 -3.0076 25 14 -2.1184 -10.3862 -3.1287 26 1 -3.5810 -10.4421 -2.8780 27 1 -1.8684 -10.3428 -4.5919 28 1 -1.4709 -11.5915 -2.5514 29 6 0.0124 -6.4315 1.5714 30 1 -0.8967 -6.2535 2.1458 31 6 0.2761 -5.3685 0.4833 32 1 -0.3633 0.6404 0.8038 33 1 -0.3633 0.3760 -0.9564 34 1 -0.3633 -1.0162 0.1527 35 1 3.1301 1.4423 0.0005 36 1 1.6769 1.9562 -0.8900 37 1 1.6768 1.9563 0.8899 38 1 1.8037 -1.7830 -1.1777 39 1 1.5599 -0.3010 -2.1329 40 1 3.1197 -0.5939 -1.3270 41 1 3.5949 -1.0058 4.0251 42 1 1.3206 -4.3311 3.2501 43 1 2.7509 -4.7240 2.2579 44 1 2.7381 -6.4871 0.7844 45 1 3.1464 -7.5025 2.2003 46 1 1.6370 -9.1780 1.5903 47 1 1.8754 -8.4955 -0.0434 48 1 -0.3799 -6.9510 -0.9349 49 1 -1.6667 -7.6931 -3.9217 50 1 0.8881 -5.7882 -0.3150 51 1 -0.6666 -4.9962 0.0823 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026394657.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:32 Heat of formation + Delta-G solvation = 11.973984 kcal Electronic energy + Delta-G solvation = -32276.913460 eV Core-core repulsion = 28178.585911 eV Total energy + Delta-G solvation = -4098.327549 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.65282 -40.34032 -38.65769 -36.90540 -35.13621 -34.79579 -33.20079 -30.92333 -30.11670 -29.02516 -28.31813 -27.43717 -27.29121 -25.70741 -24.41943 -23.28169 -23.07630 -22.50737 -20.36791 -19.64142 -19.16856 -18.80528 -17.77473 -17.18823 -16.94062 -16.52708 -15.76234 -15.46604 -15.15029 -15.05531 -14.75272 -14.45120 -14.07588 -13.94439 -13.54201 -13.41950 -13.09931 -12.95085 -12.55100 -12.50683 -12.42105 -12.18495 -12.10655 -11.78679 -11.67275 -11.53316 -11.27210 -11.21491 -11.17090 -11.07995 -10.82266 -10.75066 -10.62940 -10.38823 -10.33664 -10.17798 -10.09538 -9.83647 -9.63130 -9.57314 -9.07302 -8.87359 -8.29297 -6.93077 -5.73236 -3.02771 1.00480 1.94133 2.35722 3.09653 3.32648 3.45615 3.50731 3.52538 3.87235 4.28300 4.48288 4.60374 4.66668 4.76615 4.76777 4.89479 4.94683 5.10089 5.34082 5.42726 5.50304 5.51442 5.52334 5.57680 5.60556 5.66794 5.72873 5.74739 5.77650 5.84032 5.86489 5.87975 5.91147 6.00656 6.02655 6.04929 6.11421 6.14803 6.30604 6.40327 6.42028 6.43647 6.55717 6.58509 6.63687 6.72049 6.84165 7.13804 7.30046 7.70883 7.73939 8.27922 8.45093 9.55892 10.13195 10.46739 11.48998 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014588 B = 0.003025 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.899573 B = 9255.501568 C =10760.215587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.023 3.977 3 C -0.145 4.145 4 C -0.154 4.154 5 C 0.055 3.945 6 O -0.198 6.198 7 C 0.162 3.838 8 N -0.456 5.456 9 C -0.068 4.068 10 C 0.605 3.395 11 O -0.518 6.518 12 N -0.596 5.596 13 C 0.121 3.879 14 C -0.106 4.106 15 H 0.101 0.899 16 C -0.115 4.115 17 C -0.145 4.145 18 C 0.183 3.817 19 H 0.053 0.947 20 N -0.725 5.725 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.930 5.930 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.283 1.283 29 C -0.105 4.105 30 H 0.087 0.913 31 C 0.118 3.882 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.252 0.748 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.073 0.927 48 H 0.386 0.614 49 H 0.255 0.745 50 H 0.084 0.916 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.412 16.437 13.857 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.022 3.978 3 C -0.202 4.202 4 C -0.211 4.211 5 C -0.001 4.001 6 O -0.084 6.084 7 C -0.066 4.066 8 N -0.185 5.185 9 C -0.187 4.187 10 C 0.393 3.607 11 O -0.397 6.397 12 N -0.327 5.327 13 C -0.002 4.002 14 C -0.125 4.125 15 H 0.120 0.880 16 C -0.153 4.153 17 C -0.186 4.186 18 C 0.072 3.928 19 H 0.071 0.929 20 N -0.368 5.368 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.125 4.125 30 H 0.106 0.894 31 C -0.003 4.003 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.268 0.732 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.092 0.908 48 H 0.222 0.778 49 H 0.065 0.935 50 H 0.102 0.898 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.050 15.956 13.549 23.220 hybrid contribution -0.100 0.032 -0.634 0.643 sum 9.951 15.988 12.915 22.834 Atomic orbital electron populations 1.22196 0.91434 1.05476 1.01926 1.19244 0.96866 0.94216 0.87427 1.21933 1.01269 0.94431 1.02568 1.22192 0.99839 1.04325 0.94748 1.23898 0.93016 0.92522 0.90700 1.84359 1.54650 1.41353 1.27989 1.28014 1.01499 0.81065 0.96015 1.70868 1.10310 1.26626 1.10727 1.21432 1.07301 0.94205 0.95799 1.16292 0.80501 0.80262 0.83642 1.90706 1.45584 1.77878 1.25554 1.48274 1.49809 1.07085 1.27563 1.21975 0.97167 0.93203 0.87873 1.23221 0.96114 0.93645 0.99556 0.88041 1.22411 0.96960 0.97677 0.98211 1.22969 0.98011 0.96484 1.01125 1.20667 0.92599 0.92000 0.87507 0.92859 1.42704 1.73313 1.11834 1.08951 1.19241 1.32605 0.90018 0.95378 0.91191 1.24740 1.02069 0.96973 0.97049 1.69656 1.52536 1.24776 1.10884 0.86224 0.78947 0.82537 0.78660 1.21778 1.21843 1.20828 1.23215 0.97169 0.96487 0.95652 0.89430 1.22231 0.97382 0.85432 0.95301 0.93402 0.91269 0.88456 0.92318 0.91330 0.92301 0.88664 0.91172 0.93311 0.73217 0.91136 0.91327 0.91951 0.92453 0.93039 0.90841 0.77755 0.93467 0.89771 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.19 37.16 0.30 -1.53 16 2 C 0.02 0.26 0.75 -155.66 -0.12 0.15 16 3 C -0.14 -1.28 8.05 37.15 0.30 -0.98 16 4 C -0.15 -1.89 8.17 37.16 0.30 -1.59 16 5 C 0.06 0.69 5.73 -35.08 -0.20 0.49 16 6 O -0.20 -2.05 10.19 6.51 0.07 -1.98 16 7 C 0.16 1.41 13.19 51.96 0.69 2.10 16 8 N -0.46 -5.52 8.85 -11.48 -0.10 -5.62 16 9 C -0.07 -0.95 6.61 -83.02 -0.55 -1.50 16 10 C 0.60 9.97 7.20 -12.53 -0.09 9.88 16 11 O -0.52 -9.41 10.52 5.27 0.06 -9.35 16 12 N -0.60 -9.58 3.32 -172.36 -0.57 -10.15 16 13 C 0.12 1.63 4.77 -3.19 -0.02 1.61 16 14 C -0.11 -1.41 4.25 -87.26 -0.37 -1.78 16 15 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 16 C -0.11 -1.64 5.58 -25.17 -0.14 -1.78 16 17 C -0.15 -2.50 6.57 -25.69 -0.17 -2.67 16 18 C 0.18 3.51 3.23 -67.11 -0.22 3.30 16 19 H 0.05 1.04 8.09 -51.93 -0.42 0.62 16 20 N -0.73 -17.74 4.81 -52.63 -0.25 -17.99 16 21 C -0.24 -6.61 9.95 -15.06 -0.15 -6.76 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 25 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 C -0.11 -1.72 4.03 -87.77 -0.35 -2.07 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 31 C 0.12 2.13 4.40 -2.86 -0.01 2.12 16 32 H 0.05 0.51 8.13 -51.93 -0.42 0.09 16 33 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 34 H 0.10 1.44 4.72 -51.93 -0.25 1.20 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 1.46 4.56 -51.93 -0.24 1.22 16 39 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 40 H 0.05 0.54 8.13 -51.93 -0.42 0.12 16 41 H 0.25 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.07 0.92 7.49 -51.93 -0.39 0.53 16 43 H 0.07 0.92 7.56 -51.93 -0.39 0.53 16 44 H 0.06 0.97 7.27 -51.93 -0.38 0.59 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.07 1.47 7.92 -51.93 -0.41 1.06 16 48 H 0.39 10.04 5.34 -40.82 -0.22 9.82 16 49 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 50 H 0.08 1.71 6.30 -51.93 -0.33 1.38 16 51 H 0.08 1.66 8.02 -51.93 -0.42 1.25 16 LS Contribution 388.66 15.07 5.86 5.86 Total: -1.00 -31.96 388.66 -8.18 -40.14 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -8.05 Total: 10.61 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -0.89 Total: -1.46 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -0.20 Total: -61.20 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.12 Total: -11.34 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.96 -8.18 -40.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026394657.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.116 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds