Wall clock time and date at job start Wed Apr 1 2020 05:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47160 * 239.99540 * 2 1 3 5 5 C 1.50699 * 109.46975 * 120.00115 * 2 1 3 6 6 O 1.34261 * 126.52805 * 242.06004 * 5 2 1 7 7 C 1.34045 * 108.23008 * 180.22892 * 6 5 2 8 8 N 1.29936 * 109.24526 * 359.76854 * 7 6 5 9 9 C 1.36078 * 108.47509 * 0.02562 * 8 7 6 10 10 C 1.47415 * 126.44567 * 179.97438 * 9 8 7 11 11 O 1.21611 * 119.99800 * 175.10365 * 10 9 8 12 12 N 1.34773 * 120.00636 * 355.09271 * 10 9 8 13 13 C 1.46914 * 125.61308 * 359.97438 * 12 10 9 14 14 C 1.54206 * 107.63185 * 178.51271 * 13 12 10 15 15 H 1.09004 * 114.47784 * 214.84087 * 14 13 12 16 16 C 1.54849 * 108.04793 * 87.00178 * 14 13 12 17 17 C 1.54131 * 104.63146 * 214.54234 * 16 14 13 18 18 C 1.53867 * 106.49627 * 24.49979 * 17 16 14 19 19 H 1.09001 * 109.92174 * 238.95710 * 18 17 16 20 20 N 1.46499 * 110.09113 * 117.74088 * 18 17 16 21 21 C 1.36938 * 120.00017 * 86.92439 * 20 18 17 22 22 H 1.08001 * 119.99675 * 359.97438 * 21 20 18 23 23 C 1.38807 * 120.00061 * 180.02562 * 21 20 18 24 24 N 1.31616 * 120.00556 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00061 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47314 * 89.99795 * 25 23 21 27 27 H 1.48503 * 109.47272 * 209.99844 * 25 23 21 28 28 H 1.48504 * 109.46978 * 329.99980 * 25 23 21 29 29 C 1.53709 * 107.02965 * 358.30546 * 18 17 16 30 30 H 1.09001 * 112.96452 * 214.87943 * 29 18 17 31 31 C 1.47338 * 125.62268 * 180.02562 * 12 10 9 32 32 H 1.09002 * 109.46861 * 308.54278 * 1 2 3 33 33 H 1.08999 * 109.46723 * 68.53661 * 1 2 3 34 34 H 1.08998 * 109.46992 * 188.54268 * 1 2 3 35 35 H 1.09005 * 109.47104 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.47160 * 299.99658 * 3 2 1 37 37 H 1.09001 * 109.47520 * 59.99720 * 3 2 1 38 38 H 1.08998 * 109.46991 * 291.65287 * 4 2 1 39 39 H 1.08998 * 109.46451 * 51.64916 * 4 2 1 40 40 H 1.08993 * 109.47327 * 171.64724 * 4 2 1 41 41 H 1.07998 * 125.37990 * 179.73224 * 7 6 5 42 42 H 1.08996 * 109.82401 * 58.98743 * 13 12 10 43 43 H 1.08997 * 109.82067 * 298.03727 * 13 12 10 44 44 H 1.08996 * 110.40323 * 333.33468 * 16 14 13 45 45 H 1.09005 * 110.40290 * 95.63359 * 16 14 13 46 46 H 1.09001 * 110.05223 * 265.23940 * 17 16 14 47 47 H 1.09000 * 110.04879 * 143.76320 * 17 16 14 48 48 H 0.97004 * 120.00289 * 266.92660 * 20 18 17 49 49 H 0.96998 * 120.00516 * 180.02562 * 24 23 21 50 50 H 1.08999 * 110.29885 * 84.94759 * 31 12 10 51 51 H 1.09007 * 110.29879 * 322.80736 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2304 6 8 2.7753 -0.1775 2.2136 7 6 3.0178 -1.1336 3.1213 8 7 2.4496 -2.2387 2.7415 9 6 1.8171 -2.0137 1.5578 10 6 1.0478 -2.9979 0.7751 11 8 0.4539 -2.6477 -0.2267 12 7 1.0029 -4.2859 1.1693 13 6 1.6715 -4.8419 2.3535 14 6 1.3140 -6.3400 2.4314 15 1 1.2038 -6.7258 3.4449 16 6 2.3387 -7.1230 1.5744 17 6 1.5310 -8.2882 0.9698 18 6 0.0610 -7.8342 0.9449 19 1 -0.5502 -8.5229 1.5282 20 7 -0.4261 -7.7814 -0.4357 21 6 -0.9466 -8.9044 -1.0215 22 1 -0.9976 -9.8291 -0.4658 23 6 -1.4077 -8.8545 -2.3298 24 7 -1.3442 -7.7281 -3.0076 25 14 -2.1184 -10.3862 -3.1287 26 1 -3.5810 -10.4421 -2.8780 27 1 -1.8684 -10.3428 -4.5919 28 1 -1.4709 -11.5915 -2.5514 29 6 0.0124 -6.4315 1.5714 30 1 -0.8967 -6.2535 2.1458 31 6 0.2761 -5.3685 0.4833 32 1 -0.3633 0.6404 0.8038 33 1 -0.3633 0.3760 -0.9564 34 1 -0.3633 -1.0162 0.1527 35 1 3.1301 1.4423 0.0005 36 1 1.6769 1.9562 -0.8900 37 1 1.6768 1.9563 0.8899 38 1 1.8037 -1.7830 -1.1777 39 1 1.5599 -0.3010 -2.1329 40 1 3.1197 -0.5939 -1.3270 41 1 3.5949 -1.0058 4.0251 42 1 1.3206 -4.3311 3.2501 43 1 2.7509 -4.7240 2.2579 44 1 2.7381 -6.4871 0.7844 45 1 3.1464 -7.5025 2.2003 46 1 1.6370 -9.1780 1.5903 47 1 1.8754 -8.4955 -0.0434 48 1 -0.3799 -6.9510 -0.9349 49 1 -1.6667 -7.6931 -3.9217 50 1 0.8881 -5.7882 -0.3150 51 1 -0.6666 -4.9962 0.0823 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026394657.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:31 Heat of formation + Delta-G solvation = -9.287283 kcal Electronic energy + Delta-G solvation = -32277.835418 eV Core-core repulsion = 28178.585911 eV Total energy + Delta-G solvation = -4099.249507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.50422 -41.64089 -39.91595 -37.86684 -36.58579 -35.82283 -34.88188 -32.72207 -31.18331 -30.25719 -29.81994 -28.27169 -28.23295 -27.18838 -25.74580 -25.09193 -23.90134 -23.62421 -21.40441 -20.94568 -20.29879 -20.13617 -19.28425 -18.71244 -17.82997 -17.60505 -17.19083 -16.70783 -16.45065 -16.21572 -16.06341 -15.63547 -15.39397 -15.12387 -14.95015 -14.49664 -14.45152 -14.30446 -14.05573 -13.75447 -13.53873 -13.26175 -13.21825 -13.02984 -12.99875 -12.68598 -12.59955 -12.58274 -12.39896 -12.21260 -12.15229 -12.05667 -12.03899 -11.87166 -11.61952 -11.56637 -11.52826 -11.32369 -11.28552 -10.90864 -10.87918 -10.02852 -9.56341 -8.97431 -7.91860 -5.20567 0.04530 1.09029 1.46517 1.48399 1.50590 1.56668 1.93002 2.18999 2.57025 3.06640 3.32057 3.40788 3.42200 3.54187 3.69659 3.79105 3.90381 3.91756 4.04944 4.21209 4.24052 4.33674 4.39425 4.46109 4.48845 4.52970 4.66206 4.68374 4.70912 4.73919 4.76221 4.82089 4.82937 4.91447 4.94167 4.96085 5.00417 5.07374 5.13959 5.18486 5.20551 5.24636 5.29860 5.34575 5.39784 5.49909 5.51180 5.55264 5.65744 6.30134 6.38497 6.54620 7.04625 7.35581 8.13748 8.34534 9.31638 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014588 B = 0.003025 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.899573 B = 9255.501568 C =10760.215587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.021 3.979 3 C -0.137 4.137 4 C -0.152 4.152 5 C 0.055 3.945 6 O -0.193 6.193 7 C 0.192 3.808 8 N -0.484 5.484 9 C -0.089 4.089 10 C 0.594 3.406 11 O -0.547 6.547 12 N -0.601 5.601 13 C 0.127 3.873 14 C -0.086 4.086 15 H 0.141 0.859 16 C -0.106 4.106 17 C -0.138 4.138 18 C 0.174 3.826 19 H 0.056 0.944 20 N -0.740 5.740 21 C -0.236 4.236 22 H 0.079 0.921 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.971 3.029 26 H -0.288 1.288 27 H -0.299 1.299 28 H -0.267 1.267 29 C -0.101 4.101 30 H 0.096 0.904 31 C 0.130 3.870 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.307 0.693 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.041 0.959 45 H 0.091 0.909 46 H 0.073 0.927 47 H 0.037 0.963 48 H 0.374 0.626 49 H 0.248 0.752 50 H 0.052 0.948 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.268 17.152 17.339 27.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 C -0.194 4.194 4 C -0.209 4.209 5 C -0.003 4.003 6 O -0.079 6.079 7 C -0.036 4.036 8 N -0.212 5.212 9 C -0.208 4.208 10 C 0.384 3.616 11 O -0.427 6.427 12 N -0.332 5.332 13 C 0.005 3.995 14 C -0.104 4.104 15 H 0.158 0.842 16 C -0.144 4.144 17 C -0.178 4.178 18 C 0.065 3.935 19 H 0.074 0.926 20 N -0.381 5.381 21 C -0.368 4.368 22 H 0.097 0.903 23 C -0.271 4.271 24 N -0.624 5.624 25 Si 0.801 3.199 26 H -0.216 1.216 27 H -0.226 1.226 28 H -0.192 1.192 29 C -0.120 4.120 30 H 0.114 0.886 31 C 0.007 3.993 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.322 0.678 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.110 0.890 46 H 0.092 0.908 47 H 0.056 0.944 48 H 0.208 0.792 49 H 0.057 0.943 50 H 0.070 0.930 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.930 16.636 17.101 26.675 hybrid contribution -0.620 -0.146 -1.632 1.752 sum 11.310 16.490 15.469 25.281 Atomic orbital electron populations 1.22118 0.92243 1.03631 1.02740 1.19263 0.96264 0.95767 0.86665 1.21883 1.01605 0.92335 1.03592 1.22119 1.00600 1.02281 0.95864 1.23930 0.93020 0.92063 0.91279 1.84396 1.54211 1.41520 1.27782 1.29280 0.98938 0.79441 0.95931 1.70813 1.11742 1.28373 1.10253 1.21099 1.08505 0.94206 0.96963 1.16798 0.80458 0.80724 0.83666 1.90702 1.46669 1.78472 1.26873 1.48346 1.49942 1.06735 1.28190 1.22060 0.97260 0.93093 0.87073 1.23297 0.93096 0.93513 1.00531 0.84153 1.22351 0.97697 0.96194 0.98162 1.22777 0.96560 0.98628 0.99843 1.20971 0.93683 0.93935 0.84928 0.92633 1.42944 1.73542 1.10619 1.11042 1.19673 1.30693 0.90968 0.95438 0.90342 1.25561 1.03749 0.99822 0.98016 1.69841 1.54673 1.27025 1.10811 0.85164 0.78107 0.79589 0.77060 1.21565 1.22643 1.19210 1.23130 0.99539 0.93855 0.95524 0.88591 1.21822 0.95325 0.86635 0.95499 0.92090 0.90682 0.91737 0.91662 0.90173 0.91446 0.92132 0.90579 0.92271 0.67830 0.89814 0.90718 0.93965 0.89015 0.90841 0.94403 0.79208 0.94275 0.92962 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 8.19 71.98 0.59 -3.08 16 2 C 0.02 0.47 0.75 -52.93 -0.04 0.43 16 3 C -0.14 -2.14 8.05 71.98 0.58 -1.56 16 4 C -0.15 -3.85 8.17 71.98 0.59 -3.26 16 5 C 0.05 1.30 5.73 25.19 0.14 1.45 16 6 O -0.19 -3.42 10.19 0.39 0.00 -3.41 16 7 C 0.19 2.59 13.19 130.52 1.72 4.31 16 8 N -0.48 -10.56 8.85 -305.15 -2.70 -13.26 16 9 C -0.09 -2.49 6.61 40.40 0.27 -2.22 16 10 C 0.59 20.61 7.20 86.66 0.62 21.23 16 11 O -0.55 -21.69 10.52 -4.07 -0.04 -21.73 16 12 N -0.60 -20.01 3.32 -817.47 -2.72 -22.73 16 13 C 0.13 3.22 4.77 86.71 0.41 3.63 16 14 C -0.09 -2.06 4.25 -8.62 -0.04 -2.09 16 15 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 16 C -0.11 -2.83 5.58 31.61 0.18 -2.66 16 17 C -0.14 -4.65 6.57 31.27 0.21 -4.44 16 18 C 0.17 6.70 3.23 45.52 0.15 6.85 16 19 H 0.06 2.12 8.09 -2.39 -0.02 2.10 16 20 N -0.74 -37.81 4.81 -320.43 -1.54 -39.35 16 21 C -0.24 -13.23 9.95 84.03 0.84 -12.40 16 22 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 23 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 24 N -0.97 -61.87 13.06 21.65 0.28 -61.58 16 25 Si 0.97 47.30 29.55 68.60 2.03 49.33 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 28 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 29 C -0.10 -3.29 4.03 -8.95 -0.04 -3.32 16 30 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 31 C 0.13 5.03 4.40 86.69 0.38 5.42 16 32 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 33 H 0.07 1.67 8.07 -2.39 -0.02 1.66 16 34 H 0.06 2.05 4.72 -2.39 -0.01 2.04 16 35 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 2.00 4.56 -2.39 -0.01 1.99 16 39 H 0.08 1.76 8.07 -2.39 -0.02 1.74 16 40 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 41 H 0.31 0.09 8.06 -2.91 -0.02 0.07 16 42 H 0.08 1.95 7.49 -2.39 -0.02 1.93 16 43 H 0.07 1.84 7.56 -2.39 -0.02 1.82 16 44 H 0.04 1.30 7.27 -2.39 -0.02 1.29 16 45 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 46 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.04 1.54 7.92 -2.39 -0.02 1.52 16 48 H 0.37 20.87 5.34 -92.71 -0.50 20.38 16 49 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 50 H 0.05 2.34 6.30 -2.39 -0.02 2.32 16 51 H 0.05 2.12 8.02 -2.38 -0.02 2.10 16 Total: -1.00 -75.58 388.66 2.79 -72.79 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: 0.45 Total: 35.88 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 7.03 Total: 4.06 kcal Atomic # 7 Polarization: -130.24 SS G_CDS: -6.67 Total: -136.91 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.04 Total: -25.14 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -75.58 2.79 -72.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026394657.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.504 kcal (2) G-P(sol) polarization free energy of solvation -75.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds