Wall clock time and date at job start Wed Apr 1 2020 05:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46528 * 2 1 4 4 C 1.53000 * 109.47212 * 240.00300 * 2 1 3 5 5 C 1.50694 * 109.46990 * 119.99627 * 2 1 3 6 6 C 1.34330 * 126.44575 * 60.00559 * 5 2 1 7 7 N 1.34479 * 107.67297 * 180.02562 * 6 5 2 8 8 C 1.30256 * 108.69947 * 359.97438 * 7 6 5 9 9 C 1.50695 * 125.61875 * 180.26453 * 8 7 6 10 10 C 1.52993 * 109.47521 * 89.69926 * 9 8 7 11 11 C 1.50701 * 109.47527 * 180.02562 * 10 9 8 12 12 O 1.21280 * 119.99696 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99715 * 179.97438 * 11 10 9 14 14 C 1.47860 * 126.95041 * 359.67839 * 13 11 10 15 15 C 1.55999 * 105.11680 * 181.87747 * 14 13 11 16 16 H 1.08997 * 116.16292 * 159.05366 * 15 14 13 17 17 C 1.57081 * 99.47592 * 33.16658 * 15 14 13 18 18 C 1.49296 * 126.93701 * 179.97438 * 13 11 10 19 19 H 1.08997 * 116.15748 * 16.70313 * 18 13 11 20 20 C 1.56021 * 104.09045 * 247.55505 * 18 13 11 21 21 N 1.49289 * 104.31552 * 289.11163 * 15 14 13 22 22 C 1.36936 * 126.94874 * 246.61040 * 21 15 14 23 23 H 1.07998 * 119.99729 * 353.69212 * 22 21 15 24 24 C 1.38813 * 120.00190 * 173.67891 * 22 21 15 25 25 N 1.31613 * 119.99976 * 6.43451 * 24 22 21 26 26 Si 1.86799 * 119.99949 * 186.42740 * 24 22 21 27 27 H 1.48507 * 109.46929 * 94.98652 * 26 24 22 28 28 H 1.48494 * 109.47391 * 214.98630 * 26 24 22 29 29 H 1.48501 * 109.47284 * 334.99262 * 26 24 22 30 30 O 1.33971 * 108.76283 * 0.02562 * 8 7 6 31 31 H 1.09004 * 109.47556 * 299.99943 * 1 2 3 32 32 H 1.09002 * 109.47499 * 60.00237 * 1 2 3 33 33 H 1.08999 * 109.47115 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46508 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47034 * 299.99489 * 3 2 1 36 36 H 1.08996 * 109.47309 * 60.00082 * 3 2 1 37 37 H 1.09005 * 109.46428 * 299.99359 * 4 2 1 38 38 H 1.08990 * 109.47171 * 59.99672 * 4 2 1 39 39 H 1.09000 * 109.46705 * 179.97438 * 4 2 1 40 40 H 1.08006 * 126.16082 * 359.97438 * 6 5 2 41 41 H 1.09009 * 109.46994 * 209.69687 * 9 8 7 42 42 H 1.08996 * 109.47062 * 329.69318 * 9 8 7 43 43 H 1.09009 * 109.46791 * 299.99885 * 10 9 8 44 44 H 1.08996 * 109.47449 * 59.99629 * 10 9 8 45 45 H 1.08995 * 110.31983 * 300.91252 * 14 13 11 46 46 H 1.09006 * 110.31182 * 63.09851 * 14 13 11 47 47 H 1.08994 * 112.37176 * 191.51597 * 17 15 14 48 48 H 1.09002 * 112.44948 * 64.08994 * 17 15 14 49 49 H 1.09000 * 110.31363 * 47.67827 * 20 18 13 50 50 H 1.09000 * 110.31479 * 169.86292 * 20 18 13 51 51 H 0.97004 * 120.00217 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7103 1.2305 6 6 1.7890 -1.9870 1.5701 7 7 2.4169 -2.2263 2.7350 8 6 3.0304 -1.1401 3.1096 9 6 3.8570 -0.9857 4.3601 10 6 5.3110 -1.3544 4.0592 11 6 6.1375 -1.2007 5.3100 12 8 5.6150 -0.8320 6.3405 13 7 7.4572 -1.4729 5.2833 14 6 8.2459 -1.9357 4.1214 15 6 9.6939 -2.1360 4.6664 16 1 10.3395 -2.7939 4.0848 17 6 9.3579 -2.5976 6.1297 18 6 8.4169 -1.3739 6.4226 19 1 7.9769 -1.3259 7.4187 20 6 9.3570 -0.1937 6.0259 21 7 10.1911 -0.7498 4.9112 22 6 11.2026 -0.1088 4.2469 23 1 11.7982 -0.6453 3.5232 24 6 11.4622 1.2304 4.5035 25 7 10.8233 1.8506 5.4727 26 14 12.7184 2.1524 3.4734 27 1 12.0264 2.8640 2.3687 28 1 13.4315 3.1369 4.3263 29 1 13.6960 1.1893 2.9059 30 8 2.8099 -0.1842 2.1972 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8901 36 1 1.6765 1.9564 0.8899 37 1 1.6767 -1.7489 -1.2492 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7207 -1.2494 40 1 1.1952 -2.6936 1.0092 41 1 3.8077 0.0479 4.7029 42 1 3.4681 -1.6448 5.1363 43 1 5.3602 -2.3880 3.7164 44 1 5.6999 -0.6953 3.2831 45 1 7.8478 -2.8778 3.7447 46 1 8.2406 -1.1804 3.3354 47 1 10.2372 -2.6080 6.7737 48 1 8.8233 -3.5473 6.1542 49 1 8.7700 0.6619 5.6920 50 1 9.9896 0.0859 6.8684 51 1 11.0044 2.7866 5.6519 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032450404.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:49 Heat of formation + Delta-G solvation = 29.418813 kcal Electronic energy + Delta-G solvation = -30822.410700 eV Core-core repulsion = 26724.839615 eV Total energy + Delta-G solvation = -4097.571085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.49946 -40.05382 -38.02749 -37.39455 -34.90501 -33.66461 -33.53166 -31.55196 -29.43169 -28.75839 -28.47534 -27.73480 -27.69809 -25.41151 -25.08671 -23.32476 -22.90037 -21.45599 -20.33093 -19.90109 -19.85707 -18.41504 -17.53210 -16.94349 -16.71423 -16.27041 -15.85809 -15.54676 -15.28437 -14.69223 -14.47404 -14.37848 -13.99983 -13.96631 -13.60722 -13.37404 -13.24475 -12.80539 -12.77406 -12.61723 -12.33221 -12.13073 -12.10633 -11.96096 -11.86395 -11.63863 -11.47099 -11.35891 -11.34738 -11.33773 -11.19213 -11.03622 -10.89387 -10.78853 -10.60102 -10.54956 -10.29197 -10.08529 -9.65493 -9.50515 -8.79188 -8.71553 -8.03294 -6.95201 -5.80248 -3.13566 1.30791 2.45034 2.55716 3.00615 3.35199 3.36626 3.40617 3.43365 3.91413 4.24339 4.39549 4.43809 4.47844 4.72702 4.76455 4.89601 4.91302 5.04871 5.14549 5.16298 5.17975 5.19473 5.32973 5.33053 5.39920 5.44432 5.45418 5.51611 5.54693 5.60605 5.62266 5.68636 5.73636 5.75648 5.83571 5.86514 5.92067 5.93901 5.99286 6.16190 6.20510 6.26880 6.39296 6.46973 6.57417 6.66717 7.36799 7.47702 7.64300 7.68404 8.02791 8.07943 8.53803 9.04787 9.68253 10.37606 11.32607 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011725 B = 0.002489 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.547719 B =11248.850517 C =12680.520069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.018 3.982 3 C -0.146 4.146 4 C -0.140 4.140 5 C -0.038 4.038 6 C -0.040 4.040 7 N -0.481 5.481 8 C 0.196 3.804 9 C -0.006 4.006 10 C -0.131 4.131 11 C 0.531 3.469 12 O -0.557 6.557 13 N -0.605 5.605 14 C 0.082 3.918 15 C 0.143 3.857 16 H 0.106 0.894 17 C -0.152 4.152 18 C 0.097 3.903 19 H 0.112 0.888 20 C 0.176 3.824 21 N -0.600 5.600 22 C -0.232 4.232 23 H 0.080 0.920 24 C -0.005 4.005 25 N -0.917 5.917 26 Si 0.910 3.090 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.280 1.280 30 O -0.194 6.194 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.179 0.821 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.065 0.935 49 H 0.052 0.948 50 H 0.054 0.946 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.940 -7.261 -10.380 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.018 3.982 3 C -0.203 4.203 4 C -0.198 4.198 5 C -0.091 4.091 6 C -0.179 4.179 7 N -0.209 5.209 8 C -0.011 4.011 9 C -0.045 4.045 10 C -0.172 4.172 11 C 0.320 3.680 12 O -0.436 6.436 13 N -0.338 5.338 14 C -0.044 4.044 15 C 0.034 3.966 16 H 0.124 0.876 17 C -0.191 4.191 18 C -0.005 4.005 19 H 0.130 0.870 20 C 0.051 3.949 21 N -0.324 5.324 22 C -0.360 4.360 23 H 0.098 0.902 24 C -0.202 4.202 25 N -0.564 5.564 26 Si 0.741 3.259 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.206 1.206 30 O -0.080 6.080 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.196 0.804 41 H 0.119 0.881 42 H 0.132 0.868 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.102 0.898 48 H 0.084 0.916 49 H 0.071 0.929 50 H 0.072 0.928 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.131 -7.292 -9.503 21.731 hybrid contribution 0.581 1.178 -1.089 1.707 sum -17.550 -6.114 -10.592 21.391 Atomic orbital electron populations 1.21931 0.92354 1.02688 1.02705 1.19120 0.95727 0.95308 0.88063 1.21886 1.01988 0.93912 1.02547 1.21935 1.01880 1.00420 0.95517 1.23366 0.98245 0.94647 0.92876 1.22948 1.04395 0.95404 0.95145 1.70467 1.11489 1.26489 1.12502 1.26319 0.99350 0.81750 0.93633 1.19823 0.90899 1.05757 0.87996 1.21563 0.93421 1.04502 0.97726 1.19863 0.81037 0.77450 0.89671 1.90674 1.71076 1.48382 1.33492 1.49196 1.06481 1.64939 1.13170 1.23323 0.94342 0.97978 0.88731 1.23115 0.90884 0.88907 0.93696 0.87590 1.24167 0.99305 0.96267 0.99382 1.24367 0.87703 0.98224 0.90243 0.86970 1.22276 0.90455 0.91204 0.90938 1.45720 1.38173 1.09382 1.39158 1.19060 1.07291 0.92389 1.17296 0.90184 1.24830 0.99942 0.96671 0.98748 1.69915 1.44739 1.10735 1.30974 0.86130 0.80471 0.79785 0.79541 1.21658 1.21765 1.20583 1.84422 1.53805 1.41450 1.28345 0.92113 0.91196 0.91927 0.91840 0.91595 0.92001 0.91915 0.91193 0.91952 0.80400 0.88077 0.86841 0.88479 0.88628 0.92743 0.91061 0.89807 0.91597 0.92948 0.92765 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.35 37.16 0.31 -0.55 16 2 C 0.02 0.15 0.93 -155.66 -0.15 0.00 16 3 C -0.15 -1.17 8.06 37.16 0.30 -0.87 16 4 C -0.14 -0.91 8.35 37.16 0.31 -0.60 16 5 C -0.04 -0.42 5.70 -35.69 -0.20 -0.62 16 6 C -0.04 -0.46 11.24 -17.77 -0.20 -0.66 16 7 N -0.48 -6.61 11.29 -11.10 -0.13 -6.74 16 8 C 0.20 2.63 7.60 -12.95 -0.10 2.53 16 9 C -0.01 -0.08 5.13 -27.89 -0.14 -0.23 16 10 C -0.13 -1.80 4.97 -27.89 -0.14 -1.93 16 11 C 0.53 9.29 7.90 -10.98 -0.09 9.20 16 12 O -0.56 -11.24 16.33 5.56 0.09 -11.15 16 13 N -0.60 -10.87 2.94 -156.77 -0.46 -11.34 16 14 C 0.08 1.36 6.01 -1.69 -0.01 1.35 16 15 C 0.14 2.59 5.52 -62.56 -0.35 2.24 16 16 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 17 C -0.15 -2.51 6.82 -22.28 -0.15 -2.66 16 18 C 0.10 1.85 5.18 -62.53 -0.32 1.52 16 19 H 0.11 2.08 8.06 -51.93 -0.42 1.66 16 20 C 0.18 4.15 4.87 -0.52 0.00 4.15 16 21 N -0.60 -14.18 3.07 -154.68 -0.47 -14.65 16 22 C -0.23 -6.11 10.37 -15.06 -0.16 -6.26 16 23 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 24 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 25 N -0.92 -26.48 10.61 55.49 0.59 -25.89 16 26 Si 0.91 21.53 29.56 -169.99 -5.02 16.50 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 30 O -0.19 -2.56 10.24 5.33 0.05 -2.50 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.35 8.02 -51.93 -0.42 -0.07 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.36 8.02 -51.93 -0.42 -0.05 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.18 1.51 8.06 -52.48 -0.42 1.08 16 41 H 0.10 1.32 8.10 -51.92 -0.42 0.90 16 42 H 0.11 1.46 8.10 -51.93 -0.42 1.04 16 43 H 0.10 1.20 8.14 -51.92 -0.42 0.78 16 44 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 48 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 49 H 0.05 1.42 7.59 -51.93 -0.39 1.03 16 50 H 0.05 1.41 7.65 -51.93 -0.40 1.01 16 51 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 411.57 15.07 6.20 6.20 Total: -1.00 -32.39 411.57 -9.10 -41.49 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.77 Total: 1.70 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -1.18 Total: 6.38 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.47 Total: -58.62 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.15 Total: -13.65 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.39 -9.10 -41.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032450404.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.905 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds