Wall clock time and date at job start Wed Apr 1 2020 05:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46528 * 2 1 4 4 C 1.53000 * 109.47212 * 240.00300 * 2 1 3 5 5 C 1.50694 * 109.46990 * 119.99627 * 2 1 3 6 6 C 1.34330 * 126.44575 * 60.00559 * 5 2 1 7 7 N 1.34479 * 107.67297 * 180.02562 * 6 5 2 8 8 C 1.30256 * 108.69947 * 359.97438 * 7 6 5 9 9 C 1.50695 * 125.61875 * 180.26453 * 8 7 6 10 10 C 1.52993 * 109.47521 * 89.69926 * 9 8 7 11 11 C 1.50701 * 109.47527 * 180.02562 * 10 9 8 12 12 O 1.21280 * 119.99696 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99715 * 179.97438 * 11 10 9 14 14 C 1.47860 * 126.95041 * 359.67839 * 13 11 10 15 15 C 1.55999 * 105.11680 * 181.87747 * 14 13 11 16 16 H 1.08997 * 116.16292 * 159.05366 * 15 14 13 17 17 C 1.57081 * 99.47592 * 33.16658 * 15 14 13 18 18 C 1.49296 * 126.93701 * 179.97438 * 13 11 10 19 19 H 1.08997 * 116.15748 * 16.70313 * 18 13 11 20 20 C 1.56021 * 104.09045 * 247.55505 * 18 13 11 21 21 N 1.49289 * 104.31552 * 289.11163 * 15 14 13 22 22 C 1.36936 * 126.94874 * 246.61040 * 21 15 14 23 23 H 1.07998 * 119.99729 * 353.69212 * 22 21 15 24 24 C 1.38813 * 120.00190 * 173.67891 * 22 21 15 25 25 N 1.31613 * 119.99976 * 6.43451 * 24 22 21 26 26 Si 1.86799 * 119.99949 * 186.42740 * 24 22 21 27 27 H 1.48507 * 109.46929 * 94.98652 * 26 24 22 28 28 H 1.48494 * 109.47391 * 214.98630 * 26 24 22 29 29 H 1.48501 * 109.47284 * 334.99262 * 26 24 22 30 30 O 1.33971 * 108.76283 * 0.02562 * 8 7 6 31 31 H 1.09004 * 109.47556 * 299.99943 * 1 2 3 32 32 H 1.09002 * 109.47499 * 60.00237 * 1 2 3 33 33 H 1.08999 * 109.47115 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46508 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47034 * 299.99489 * 3 2 1 36 36 H 1.08996 * 109.47309 * 60.00082 * 3 2 1 37 37 H 1.09005 * 109.46428 * 299.99359 * 4 2 1 38 38 H 1.08990 * 109.47171 * 59.99672 * 4 2 1 39 39 H 1.09000 * 109.46705 * 179.97438 * 4 2 1 40 40 H 1.08006 * 126.16082 * 359.97438 * 6 5 2 41 41 H 1.09009 * 109.46994 * 209.69687 * 9 8 7 42 42 H 1.08996 * 109.47062 * 329.69318 * 9 8 7 43 43 H 1.09009 * 109.46791 * 299.99885 * 10 9 8 44 44 H 1.08996 * 109.47449 * 59.99629 * 10 9 8 45 45 H 1.08995 * 110.31983 * 300.91252 * 14 13 11 46 46 H 1.09006 * 110.31182 * 63.09851 * 14 13 11 47 47 H 1.08994 * 112.37176 * 191.51597 * 17 15 14 48 48 H 1.09002 * 112.44948 * 64.08994 * 17 15 14 49 49 H 1.09000 * 110.31363 * 47.67827 * 20 18 13 50 50 H 1.09000 * 110.31479 * 169.86292 * 20 18 13 51 51 H 0.97004 * 120.00217 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7103 1.2305 6 6 1.7890 -1.9870 1.5701 7 7 2.4169 -2.2263 2.7350 8 6 3.0304 -1.1401 3.1096 9 6 3.8570 -0.9857 4.3601 10 6 5.3110 -1.3544 4.0592 11 6 6.1375 -1.2007 5.3100 12 8 5.6150 -0.8320 6.3405 13 7 7.4572 -1.4729 5.2833 14 6 8.2459 -1.9357 4.1214 15 6 9.6939 -2.1360 4.6664 16 1 10.3395 -2.7939 4.0848 17 6 9.3579 -2.5976 6.1297 18 6 8.4169 -1.3739 6.4226 19 1 7.9769 -1.3259 7.4187 20 6 9.3570 -0.1937 6.0259 21 7 10.1911 -0.7498 4.9112 22 6 11.2026 -0.1088 4.2469 23 1 11.7982 -0.6453 3.5232 24 6 11.4622 1.2304 4.5035 25 7 10.8233 1.8506 5.4727 26 14 12.7184 2.1524 3.4734 27 1 12.0264 2.8640 2.3687 28 1 13.4315 3.1369 4.3263 29 1 13.6960 1.1893 2.9059 30 8 2.8099 -0.1842 2.1972 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8901 36 1 1.6765 1.9564 0.8899 37 1 1.6767 -1.7489 -1.2492 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7207 -1.2494 40 1 1.1952 -2.6936 1.0092 41 1 3.8077 0.0479 4.7029 42 1 3.4681 -1.6448 5.1363 43 1 5.3602 -2.3880 3.7164 44 1 5.6999 -0.6953 3.2831 45 1 7.8478 -2.8778 3.7447 46 1 8.2406 -1.1804 3.3354 47 1 10.2372 -2.6080 6.7737 48 1 8.8233 -3.5473 6.1542 49 1 8.7700 0.6619 5.6920 50 1 9.9896 0.0859 6.8684 51 1 11.0044 2.7866 5.6519 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032450404.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:48 Heat of formation + Delta-G solvation = 9.167571 kcal Electronic energy + Delta-G solvation = -30823.288860 eV Core-core repulsion = 26724.839615 eV Total energy + Delta-G solvation = -4098.449244 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.43159 -41.54543 -39.50039 -38.04071 -35.88541 -35.40515 -34.73000 -33.24651 -30.92910 -30.23891 -29.77850 -28.30946 -28.20603 -26.94394 -26.45749 -24.93929 -23.77086 -22.57525 -21.73584 -21.41194 -20.64416 -19.97047 -18.95269 -18.23004 -17.72492 -17.62136 -17.32308 -16.86160 -16.37718 -16.10093 -15.72067 -15.35503 -15.10031 -15.05374 -14.86723 -14.43859 -14.37194 -14.13785 -13.73111 -13.59607 -13.47354 -13.26539 -13.17466 -13.16227 -13.07658 -12.82560 -12.72794 -12.65312 -12.63630 -12.36405 -12.31228 -12.25277 -12.11449 -12.03726 -12.01817 -11.93265 -11.87088 -11.50570 -11.45245 -10.99798 -10.71225 -9.66512 -9.54486 -8.90091 -7.85657 -5.19684 0.38849 1.46292 1.47366 1.53298 1.56280 1.60850 1.64197 2.03727 2.48158 2.95823 3.31062 3.36976 3.54377 3.59056 3.74853 3.78129 3.90608 3.90906 3.91484 3.93658 4.06029 4.13429 4.18797 4.23161 4.39072 4.56198 4.61488 4.67751 4.70399 4.71145 4.73735 4.80888 4.82545 4.84529 4.89053 4.93503 4.95455 5.00038 5.03634 5.06641 5.14228 5.22761 5.25601 5.29768 5.34204 5.34898 5.45278 5.54381 5.65290 6.07524 6.65786 6.70099 7.00128 7.12671 7.69763 8.41959 9.26366 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011725 B = 0.002489 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.547719 B =11248.850517 C =12680.520069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.017 3.983 3 C -0.146 4.146 4 C -0.138 4.138 5 C -0.036 4.036 6 C -0.050 4.050 7 N -0.496 5.496 8 C 0.181 3.819 9 C 0.001 3.999 10 C -0.116 4.116 11 C 0.527 3.473 12 O -0.588 6.588 13 N -0.610 5.610 14 C 0.089 3.911 15 C 0.136 3.864 16 H 0.136 0.864 17 C -0.129 4.129 18 C 0.100 3.900 19 H 0.114 0.886 20 C 0.187 3.813 21 N -0.620 5.620 22 C -0.229 4.229 23 H 0.095 0.905 24 C -0.071 4.071 25 N -0.955 5.955 26 Si 0.974 3.026 27 H -0.293 1.293 28 H -0.302 1.302 29 H -0.261 1.261 30 O -0.210 6.210 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.048 0.952 40 H 0.206 0.794 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.052 0.948 47 H 0.080 0.920 48 H 0.104 0.896 49 H 0.003 0.997 50 H 0.017 0.983 51 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.941 -9.919 -13.022 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.016 3.984 3 C -0.204 4.204 4 C -0.195 4.195 5 C -0.089 4.089 6 C -0.188 4.188 7 N -0.225 5.225 8 C -0.025 4.025 9 C -0.037 4.037 10 C -0.157 4.157 11 C 0.317 3.683 12 O -0.470 6.470 13 N -0.342 5.342 14 C -0.035 4.035 15 C 0.030 3.970 16 H 0.153 0.847 17 C -0.168 4.168 18 C -0.003 4.003 19 H 0.132 0.868 20 C 0.061 3.939 21 N -0.345 5.345 22 C -0.357 4.357 23 H 0.112 0.888 24 C -0.264 4.264 25 N -0.605 5.605 26 Si 0.803 3.197 27 H -0.220 1.220 28 H -0.229 1.229 29 H -0.185 1.185 30 O -0.096 6.096 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.223 0.777 41 H 0.111 0.889 42 H 0.132 0.868 43 H 0.137 0.863 44 H 0.115 0.885 45 H 0.120 0.880 46 H 0.071 0.929 47 H 0.099 0.901 48 H 0.122 0.878 49 H 0.022 0.978 50 H 0.035 0.965 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -19.132 -10.010 -12.183 24.793 hybrid contribution 0.837 1.980 -0.299 2.171 sum -18.296 -8.030 -12.482 23.559 Atomic orbital electron populations 1.21937 0.90718 1.03514 1.03215 1.19354 0.96906 0.94834 0.87274 1.21898 1.00957 0.94455 1.03070 1.21943 1.01025 1.01143 0.95381 1.24097 0.96978 0.94934 0.92935 1.23399 1.04624 0.96113 0.94704 1.70441 1.11818 1.26708 1.13564 1.26220 1.00294 0.82021 0.93998 1.19685 0.90592 1.05297 0.88168 1.21475 0.92921 1.05792 0.95474 1.20510 0.80992 0.76360 0.90425 1.90657 1.71703 1.49601 1.35066 1.49289 1.06684 1.65044 1.13207 1.23242 0.93294 0.99473 0.87503 1.23544 0.91833 0.86357 0.95294 0.84684 1.24066 0.98615 0.96385 0.97731 1.24184 0.87834 0.97423 0.90879 0.86826 1.21873 0.90276 0.91865 0.89852 1.45981 1.37728 1.11771 1.38992 1.19537 1.07252 0.92568 1.16387 0.88763 1.25649 1.02524 0.97998 1.00215 1.70151 1.46966 1.10227 1.33109 0.85117 0.78535 0.78459 0.77611 1.22035 1.22938 1.18521 1.84423 1.54391 1.41902 1.28930 0.93191 0.89127 0.90965 0.93454 0.89373 0.93197 0.90910 0.89159 0.93315 0.77741 0.88889 0.86775 0.86301 0.88496 0.87996 0.92944 0.90146 0.87812 0.97850 0.96488 0.94748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.35 71.98 0.60 -0.75 16 2 C 0.02 0.24 0.93 -52.93 -0.05 0.19 16 3 C -0.15 -2.21 8.06 71.98 0.58 -1.63 16 4 C -0.14 -1.45 8.35 71.98 0.60 -0.85 16 5 C -0.04 -0.76 5.70 24.79 0.14 -0.62 16 6 C -0.05 -1.05 11.24 83.39 0.94 -0.11 16 7 N -0.50 -13.03 11.29 -303.82 -3.43 -16.47 16 8 C 0.18 4.77 7.60 88.34 0.67 5.44 16 9 C 0.00 0.03 5.13 29.84 0.15 0.18 16 10 C -0.12 -3.05 4.97 29.85 0.15 -2.90 16 11 C 0.53 18.18 7.90 87.66 0.69 18.87 16 12 O -0.59 -24.07 16.33 -3.03 -0.05 -24.12 16 13 N -0.61 -21.29 2.94 -768.30 -2.26 -23.55 16 14 C 0.09 2.73 6.01 87.16 0.52 3.25 16 15 C 0.14 4.58 5.52 46.92 0.26 4.84 16 16 H 0.14 3.79 8.14 -2.39 -0.02 3.77 16 17 C -0.13 -3.93 6.82 33.48 0.23 -3.70 16 18 C 0.10 3.79 5.18 46.94 0.24 4.04 16 19 H 0.11 4.26 8.06 -2.39 -0.02 4.24 16 20 C 0.19 9.23 4.87 86.76 0.42 9.65 16 21 N -0.62 -29.38 3.07 -643.29 -1.97 -31.35 16 22 C -0.23 -12.02 10.37 84.03 0.87 -11.15 16 23 H 0.09 4.58 7.84 -2.91 -0.02 4.56 16 24 C -0.07 -3.98 5.49 84.86 0.47 -3.52 16 25 N -0.96 -58.09 10.61 21.65 0.23 -57.86 16 26 Si 0.97 45.15 29.56 68.60 2.03 47.18 16 27 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 28 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 29 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 30 O -0.21 -5.51 10.24 -3.83 -0.04 -5.55 16 31 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.59 8.02 -2.39 -0.02 0.57 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.63 8.02 -2.38 -0.02 0.61 16 38 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.21 2.91 8.06 -2.91 -0.02 2.88 16 41 H 0.09 2.51 8.10 -2.38 -0.02 2.49 16 42 H 0.11 2.91 8.10 -2.39 -0.02 2.89 16 43 H 0.12 2.62 8.14 -2.38 -0.02 2.60 16 44 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 47 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 48 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 49 H 0.00 0.19 7.59 -2.39 -0.02 0.17 16 50 H 0.02 0.94 7.65 -2.39 -0.02 0.92 16 51 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -74.40 411.57 2.90 -71.50 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.90 Total: 18.99 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 7.49 Total: 21.23 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -7.43 Total: -129.23 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.09 Total: -29.68 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -74.40 2.90 -71.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032450404.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.672 kcal (2) G-P(sol) polarization free energy of solvation -74.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds