Wall clock time and date at job start Wed Apr 1 2020 04:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46873 * 2 1 4 4 C 1.50699 * 109.47029 * 180.02562 * 3 2 1 5 5 C 1.38013 * 119.51546 * 125.00240 * 4 3 2 6 6 C 1.39924 * 119.13794 * 179.97438 * 5 4 3 7 7 C 1.48161 * 120.89700 * 180.02562 * 6 5 4 8 8 O 1.21520 * 119.99675 * 306.26588 * 7 6 5 9 9 N 1.34775 * 120.00512 * 126.26959 * 7 6 5 10 10 C 1.46500 * 119.99627 * 230.09776 * 9 7 6 11 11 C 1.53001 * 109.46834 * 94.84148 * 10 9 7 12 12 C 1.46497 * 119.99908 * 50.09702 * 9 7 6 13 13 H 1.09005 * 110.88502 * 165.70043 * 12 9 7 14 14 C 1.55155 * 111.00608 * 289.57818 * 12 9 7 15 15 C 1.54324 * 102.94458 * 153.57762 * 14 12 9 16 16 N 1.47017 * 107.27044 * 337.80665 * 15 14 12 17 17 C 1.36942 * 125.64885 * 178.98437 * 16 15 14 18 18 H 1.07995 * 119.99945 * 179.97438 * 17 16 15 19 19 C 1.38808 * 119.99671 * 359.97438 * 17 16 15 20 20 N 1.31618 * 120.00473 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99623 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47048 * 90.00108 * 21 19 17 23 23 H 1.48503 * 109.46906 * 210.00144 * 21 19 17 24 24 H 1.48493 * 109.46932 * 330.00015 * 21 19 17 25 25 C 1.47428 * 108.70305 * 358.94110 * 16 15 14 26 26 C 1.39620 * 118.21269 * 359.97438 * 6 5 4 27 27 C 1.38848 * 118.94602 * 0.02562 * 26 6 5 28 28 O 1.35689 * 119.61835 * 180.02562 * 27 26 6 29 29 N 1.31882 * 119.50974 * 304.72699 * 4 3 2 30 30 H 1.08995 * 109.47296 * 299.99746 * 1 2 3 31 31 H 1.08995 * 109.47242 * 60.00040 * 1 2 3 32 32 H 1.08999 * 109.46838 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47242 * 119.99959 * 2 1 3 34 34 H 1.09004 * 109.47305 * 240.00443 * 2 1 3 35 35 H 1.08995 * 109.47153 * 300.00014 * 3 2 1 36 36 H 1.09004 * 109.46793 * 60.00130 * 3 2 1 37 37 H 1.07999 * 120.43279 * 359.95641 * 5 4 3 38 38 H 1.09000 * 109.46873 * 214.83366 * 10 9 7 39 39 H 1.08992 * 109.47228 * 334.84202 * 10 9 7 40 40 H 1.09000 * 109.46689 * 179.97438 * 11 10 9 41 41 H 1.08995 * 109.47361 * 299.99631 * 11 10 9 42 42 H 1.09004 * 109.47085 * 59.99592 * 11 10 9 43 43 H 1.09001 * 110.72349 * 271.94247 * 14 12 9 44 44 H 1.09007 * 110.71733 * 35.21140 * 14 12 9 45 45 H 1.09000 * 109.88277 * 97.22495 * 15 14 12 46 46 H 1.09002 * 109.88190 * 218.38851 * 15 14 12 47 47 H 0.97003 * 120.00187 * 179.97438 * 20 19 17 48 48 H 1.09002 * 110.36706 * 265.28446 * 25 16 15 49 49 H 1.09004 * 110.36551 * 142.96784 * 25 16 15 50 50 H 1.07996 * 120.52223 * 179.97438 * 26 6 5 51 51 H 0.96702 * 113.99560 * 95.17447 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2265 2.1317 -0.9846 6 6 5.6257 2.1269 -0.9773 7 6 6.3944 2.8539 -2.0145 8 8 6.1775 2.6424 -3.1913 9 7 7.3342 3.7497 -1.6528 10 6 7.3338 5.0904 -2.2433 11 6 6.5795 6.0526 -1.3234 12 6 8.3559 3.3827 -0.6692 13 1 9.1733 4.1039 -0.6705 14 6 7.7393 3.2434 0.7477 15 6 8.6930 2.2495 1.4435 16 7 9.3793 1.4910 0.3875 17 6 10.3247 0.5208 0.5877 18 1 10.7714 0.0194 -0.2581 19 6 10.7089 0.1818 1.8778 20 7 10.1641 0.7924 2.9086 21 14 11.9981 -1.1423 2.1508 22 1 13.3468 -0.5216 2.1786 23 1 11.7405 -1.8247 3.4444 24 1 11.9317 -2.1329 1.0467 25 6 8.8803 1.9473 -0.9226 26 6 6.2781 1.4194 0.0342 27 6 5.5178 0.7529 0.9859 28 8 6.1377 0.0616 1.9753 29 7 4.1970 0.7887 0.9423 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.6853 2.6674 -1.7504 38 1 8.3610 5.4342 -2.3647 39 1 6.8437 5.0588 -3.2163 40 1 6.5796 7.0502 -1.7626 41 1 5.5523 5.7089 -1.2019 42 1 7.0696 6.0842 -0.3503 43 1 7.7389 4.2033 1.2642 44 1 6.7305 2.8345 0.6908 45 1 9.4227 2.7937 2.0431 46 1 8.1225 1.5700 2.0769 47 1 10.4324 0.5552 3.8102 48 1 8.0711 1.3027 -1.2658 49 1 9.6898 1.9624 -1.6525 50 1 7.3568 1.3904 0.0753 51 1 6.2457 0.5613 2.7962 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033983221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:31 Heat of formation + Delta-G solvation = 39.766583 kcal Electronic energy + Delta-G solvation = -32902.448712 eV Core-core repulsion = 28805.326341 eV Total energy + Delta-G solvation = -4097.122372 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.42762 -39.46112 -37.99676 -36.87579 -35.37420 -34.84343 -32.95969 -32.01697 -30.56683 -30.52445 -29.28499 -27.21482 -26.90806 -25.07046 -24.58836 -22.86085 -22.63816 -21.50083 -21.10245 -20.30101 -19.04554 -17.88084 -17.33248 -17.18955 -16.73940 -16.10704 -15.63950 -15.34414 -15.11373 -14.73812 -14.63511 -14.51550 -13.92539 -13.78642 -13.70948 -13.49312 -13.25206 -12.97025 -12.72806 -12.57446 -12.45950 -12.10630 -11.94766 -11.91292 -11.65200 -11.42577 -11.32280 -11.22130 -11.16342 -11.07910 -11.03343 -10.82828 -10.73470 -10.49965 -10.28755 -10.14183 -9.97715 -9.81142 -9.44680 -9.10556 -8.74532 -8.32998 -8.18375 -7.01372 -5.82461 -3.18174 0.97759 1.18588 2.31978 3.00922 3.36841 3.43221 3.44506 3.69231 3.89074 4.35548 4.47598 4.58677 4.89785 4.98529 4.99157 5.04795 5.07899 5.13660 5.18245 5.25807 5.33962 5.36042 5.40986 5.45533 5.47195 5.52528 5.61012 5.66431 5.67452 5.71796 5.78516 5.83289 5.92673 5.95728 6.01287 6.10004 6.12309 6.16132 6.26227 6.29114 6.31384 6.42015 6.51373 6.72677 6.91186 7.35376 7.39747 7.44934 7.68918 7.89547 7.93571 8.09270 8.10524 9.08124 9.67308 10.27676 11.28741 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009458 B = 0.004361 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.735647 B = 6418.609498 C = 8521.035928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.063 4.063 4 C 0.132 3.868 5 C -0.138 4.138 6 C -0.099 4.099 7 C 0.602 3.398 8 O -0.499 6.499 9 N -0.647 5.647 10 C 0.123 3.877 11 C -0.171 4.171 12 C 0.137 3.863 13 H 0.103 0.897 14 C -0.201 4.201 15 C 0.171 3.829 16 N -0.595 5.595 17 C -0.236 4.236 18 H 0.080 0.920 19 C 0.002 3.998 20 N -0.918 5.918 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.106 3.894 26 C -0.155 4.155 27 C 0.305 3.695 28 O -0.464 6.464 29 N -0.489 5.489 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.136 0.864 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.254 0.746 48 H 0.028 0.972 49 H 0.052 0.948 50 H 0.207 0.793 51 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.766 8.845 -4.820 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.101 4.101 4 C -0.006 4.006 5 C -0.159 4.159 6 C -0.110 4.110 7 C 0.390 3.610 8 O -0.372 6.372 9 N -0.383 5.383 10 C 0.001 3.999 11 C -0.229 4.229 12 C 0.033 3.967 13 H 0.121 0.879 14 C -0.239 4.239 15 C 0.046 3.954 16 N -0.323 5.323 17 C -0.363 4.363 18 H 0.098 0.902 19 C -0.194 4.194 20 N -0.564 5.564 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.215 1.215 24 H -0.206 1.206 25 C -0.021 4.021 26 C -0.175 4.175 27 C 0.126 3.874 28 O -0.270 6.270 29 N -0.209 5.209 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.154 0.846 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.110 0.890 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.046 0.954 49 H 0.070 0.930 50 H 0.223 0.777 51 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -14.138 7.716 -5.041 16.877 hybrid contribution 1.273 0.138 0.166 1.292 sum -12.865 7.854 -4.875 15.842 Atomic orbital electron populations 1.21778 0.95794 1.01647 1.01607 1.21454 0.95292 0.95767 1.03116 1.20534 0.88173 0.98426 1.02975 1.20731 0.96238 0.93365 0.90278 1.21782 0.92646 1.01566 0.99896 1.20499 0.94291 0.99796 0.96417 1.18111 0.78040 0.77779 0.87056 1.90726 1.66334 1.60515 1.19588 1.47293 1.30491 1.13317 1.47183 1.21356 1.01432 0.80757 0.96350 1.22255 1.00830 0.99012 1.00822 1.22390 0.89022 0.98024 0.87231 0.87949 1.24516 1.01737 1.01379 0.96225 1.21320 0.92712 0.91261 0.90103 1.44476 1.45959 1.43118 0.98701 1.19026 1.13499 1.11273 0.92551 0.90238 1.24758 0.99792 0.99574 0.95323 1.69913 1.44960 1.43827 0.97707 0.86102 0.80954 0.81151 0.77422 1.21594 1.21532 1.20603 1.22180 0.97553 0.91338 0.90985 1.24007 1.07181 0.92845 0.93479 1.19048 0.86042 0.90965 0.91378 1.84903 1.76612 1.40917 1.24605 1.66771 1.10459 1.17837 1.25879 0.92704 0.92876 0.92731 0.90699 0.92137 0.90384 0.90054 0.84586 0.90555 0.90437 0.91705 0.92767 0.91967 0.91647 0.89045 0.92808 0.92779 0.93595 0.95446 0.93016 0.77686 0.74156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.12 -1.26 5.79 -26.73 -0.15 -1.42 16 3 C -0.06 -0.67 5.61 -27.88 -0.16 -0.83 16 4 C 0.13 1.88 6.17 -82.65 -0.51 1.37 16 5 C -0.14 -2.00 9.47 -39.03 -0.37 -2.37 16 6 C -0.10 -1.65 5.02 -104.68 -0.53 -2.17 16 7 C 0.60 10.17 5.21 -12.19 -0.06 10.11 16 8 O -0.50 -9.47 17.39 5.35 0.09 -9.37 16 9 N -0.65 -9.65 2.55 -164.66 -0.42 -10.07 16 10 C 0.12 1.43 6.35 -4.04 -0.03 1.40 16 11 C -0.17 -1.67 10.24 37.16 0.38 -1.29 16 12 C 0.14 2.26 3.54 -65.78 -0.23 2.02 16 13 H 0.10 1.57 7.91 -51.93 -0.41 1.16 16 14 C -0.20 -3.40 5.84 -24.90 -0.15 -3.54 16 15 C 0.17 3.68 4.35 -3.07 -0.01 3.66 16 16 N -0.60 -13.98 2.95 -170.07 -0.50 -14.48 16 17 C -0.24 -6.23 10.28 -15.06 -0.15 -6.38 16 18 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 19 C 0.00 0.07 5.49 -17.43 -0.10 -0.03 16 20 N -0.92 -24.84 10.31 55.49 0.57 -24.27 16 21 Si 0.91 21.45 29.55 -169.99 -5.02 16.42 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 C 0.11 2.13 5.84 -2.53 -0.01 2.12 16 26 C -0.15 -2.83 4.77 -38.84 -0.19 -3.01 16 27 C 0.30 5.53 7.73 -17.17 -0.13 5.40 16 28 O -0.46 -8.71 12.75 -18.77 -0.24 -8.94 16 29 N -0.49 -8.12 9.88 -9.60 -0.09 -8.22 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.92 7.95 -51.93 -0.41 0.51 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.67 7.86 -51.93 -0.41 0.26 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.14 1.66 7.94 -52.49 -0.42 1.24 16 38 H 0.08 0.78 7.98 -51.93 -0.41 0.36 16 39 H 0.08 0.90 7.63 -51.93 -0.40 0.51 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.09 1.56 3.04 -94.53 -0.29 1.28 16 45 H 0.05 1.29 7.38 -51.93 -0.38 0.91 16 46 H 0.05 1.25 6.11 -51.93 -0.32 0.93 16 47 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 48 H 0.03 0.60 4.84 -51.93 -0.25 0.35 16 49 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 50 H 0.21 4.13 1.37 -52.49 -0.07 4.06 16 51 H 0.40 6.05 8.70 45.56 0.40 6.45 16 LS Contribution 394.57 15.07 5.95 5.95 Total: -1.00 -30.65 394.57 -8.85 -39.50 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -7.15 Total: 9.34 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -2.03 Total: 4.15 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.44 Total: -57.04 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.15 Total: -18.32 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.65 -8.85 -39.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033983221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.266 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds