Wall clock time and date at job start Wed Apr 1 2020 04:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46873 * 2 1 4 4 C 1.50699 * 109.47029 * 180.02562 * 3 2 1 5 5 C 1.38013 * 119.51546 * 125.00240 * 4 3 2 6 6 C 1.39924 * 119.13794 * 179.97438 * 5 4 3 7 7 C 1.48161 * 120.89700 * 180.02562 * 6 5 4 8 8 O 1.21520 * 119.99675 * 306.26588 * 7 6 5 9 9 N 1.34775 * 120.00512 * 126.26959 * 7 6 5 10 10 C 1.46500 * 119.99627 * 230.09776 * 9 7 6 11 11 C 1.53001 * 109.46834 * 94.84148 * 10 9 7 12 12 C 1.46497 * 119.99908 * 50.09702 * 9 7 6 13 13 H 1.09005 * 110.88502 * 165.70043 * 12 9 7 14 14 C 1.55155 * 111.00608 * 289.57818 * 12 9 7 15 15 C 1.54324 * 102.94458 * 153.57762 * 14 12 9 16 16 N 1.47017 * 107.27044 * 337.80665 * 15 14 12 17 17 C 1.36942 * 125.64885 * 178.98437 * 16 15 14 18 18 H 1.07995 * 119.99945 * 179.97438 * 17 16 15 19 19 C 1.38808 * 119.99671 * 359.97438 * 17 16 15 20 20 N 1.31618 * 120.00473 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99623 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47048 * 90.00108 * 21 19 17 23 23 H 1.48503 * 109.46906 * 210.00144 * 21 19 17 24 24 H 1.48493 * 109.46932 * 330.00015 * 21 19 17 25 25 C 1.47428 * 108.70305 * 358.94110 * 16 15 14 26 26 C 1.39620 * 118.21269 * 359.97438 * 6 5 4 27 27 C 1.38848 * 118.94602 * 0.02562 * 26 6 5 28 28 O 1.35689 * 119.61835 * 180.02562 * 27 26 6 29 29 N 1.31882 * 119.50974 * 304.72699 * 4 3 2 30 30 H 1.08995 * 109.47296 * 299.99746 * 1 2 3 31 31 H 1.08995 * 109.47242 * 60.00040 * 1 2 3 32 32 H 1.08999 * 109.46838 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47242 * 119.99959 * 2 1 3 34 34 H 1.09004 * 109.47305 * 240.00443 * 2 1 3 35 35 H 1.08995 * 109.47153 * 300.00014 * 3 2 1 36 36 H 1.09004 * 109.46793 * 60.00130 * 3 2 1 37 37 H 1.07999 * 120.43279 * 359.95641 * 5 4 3 38 38 H 1.09000 * 109.46873 * 214.83366 * 10 9 7 39 39 H 1.08992 * 109.47228 * 334.84202 * 10 9 7 40 40 H 1.09000 * 109.46689 * 179.97438 * 11 10 9 41 41 H 1.08995 * 109.47361 * 299.99631 * 11 10 9 42 42 H 1.09004 * 109.47085 * 59.99592 * 11 10 9 43 43 H 1.09001 * 110.72349 * 271.94247 * 14 12 9 44 44 H 1.09007 * 110.71733 * 35.21140 * 14 12 9 45 45 H 1.09000 * 109.88277 * 97.22495 * 15 14 12 46 46 H 1.09002 * 109.88190 * 218.38851 * 15 14 12 47 47 H 0.97003 * 120.00187 * 179.97438 * 20 19 17 48 48 H 1.09002 * 110.36706 * 265.28446 * 25 16 15 49 49 H 1.09004 * 110.36551 * 142.96784 * 25 16 15 50 50 H 1.07996 * 120.52223 * 179.97438 * 26 6 5 51 51 H 0.96702 * 113.99560 * 95.17447 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2265 2.1317 -0.9846 6 6 5.6257 2.1269 -0.9773 7 6 6.3944 2.8539 -2.0145 8 8 6.1775 2.6424 -3.1913 9 7 7.3342 3.7497 -1.6528 10 6 7.3338 5.0904 -2.2433 11 6 6.5795 6.0526 -1.3234 12 6 8.3559 3.3827 -0.6692 13 1 9.1733 4.1039 -0.6705 14 6 7.7393 3.2434 0.7477 15 6 8.6930 2.2495 1.4435 16 7 9.3793 1.4910 0.3875 17 6 10.3247 0.5208 0.5877 18 1 10.7714 0.0194 -0.2581 19 6 10.7089 0.1818 1.8778 20 7 10.1641 0.7924 2.9086 21 14 11.9981 -1.1423 2.1508 22 1 13.3468 -0.5216 2.1786 23 1 11.7405 -1.8247 3.4444 24 1 11.9317 -2.1329 1.0467 25 6 8.8803 1.9473 -0.9226 26 6 6.2781 1.4194 0.0342 27 6 5.5178 0.7529 0.9859 28 8 6.1377 0.0616 1.9753 29 7 4.1970 0.7887 0.9423 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.6853 2.6674 -1.7504 38 1 8.3610 5.4342 -2.3647 39 1 6.8437 5.0588 -3.2163 40 1 6.5796 7.0502 -1.7626 41 1 5.5523 5.7089 -1.2019 42 1 7.0696 6.0842 -0.3503 43 1 7.7389 4.2033 1.2642 44 1 6.7305 2.8345 0.6908 45 1 9.4227 2.7937 2.0431 46 1 8.1225 1.5700 2.0769 47 1 10.4324 0.5552 3.8102 48 1 8.0711 1.3027 -1.2658 49 1 9.6898 1.9624 -1.6525 50 1 7.3568 1.3904 0.0753 51 1 6.2457 0.5613 2.7962 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033983221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:30 Heat of formation + Delta-G solvation = 19.176524 kcal Electronic energy + Delta-G solvation = -32903.341564 eV Core-core repulsion = 28805.326341 eV Total energy + Delta-G solvation = -4098.015224 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.75626 -40.74228 -39.49138 -38.21301 -36.67666 -35.87591 -34.48208 -33.49987 -31.84205 -31.60917 -30.89103 -28.77524 -27.89330 -26.59372 -26.07202 -24.05229 -23.65490 -22.81829 -22.15521 -21.98113 -20.33194 -19.26064 -19.03068 -18.60305 -18.04032 -17.34949 -16.94282 -16.81610 -16.49145 -16.26255 -15.79592 -15.66901 -15.35356 -14.98993 -14.85487 -14.63170 -14.46335 -14.29167 -14.05028 -13.91621 -13.68803 -13.48769 -13.08586 -12.96409 -12.93319 -12.83274 -12.69861 -12.56835 -12.47027 -12.34464 -12.16374 -12.10497 -12.03956 -11.90210 -11.81398 -11.60262 -11.56709 -11.35286 -10.80377 -10.63142 -10.39255 -9.58145 -9.49271 -8.92553 -7.84875 -5.21245 -0.30827 -0.07642 1.02054 1.47441 1.49014 1.56424 1.79171 2.43779 2.49507 2.63752 3.14495 3.33209 3.49900 3.58827 3.73220 3.83361 3.86366 3.93984 4.04901 4.11096 4.19374 4.20030 4.29286 4.36117 4.42139 4.47196 4.55045 4.59061 4.65006 4.73015 4.78848 4.82549 4.85696 4.87537 4.92053 4.98378 5.01742 5.02491 5.17112 5.26327 5.35987 5.36616 5.44670 5.47678 5.50664 5.60578 5.72046 5.76852 6.13164 6.20305 6.59754 6.65930 6.85025 7.09558 7.71700 8.33011 9.23729 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009458 B = 0.004361 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.735647 B = 6418.609498 C = 8521.035928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.061 4.061 4 C 0.137 3.863 5 C -0.130 4.130 6 C -0.105 4.105 7 C 0.603 3.397 8 O -0.523 6.523 9 N -0.641 5.641 10 C 0.116 3.884 11 C -0.164 4.164 12 C 0.155 3.845 13 H 0.121 0.879 14 C -0.184 4.184 15 C 0.182 3.818 16 N -0.610 5.610 17 C -0.250 4.250 18 H 0.075 0.925 19 C -0.044 4.044 20 N -0.934 5.934 21 Si 0.969 3.031 22 H -0.284 1.284 23 H -0.293 1.293 24 H -0.278 1.278 25 C 0.105 3.895 26 C -0.174 4.174 27 C 0.288 3.712 28 O -0.485 6.485 29 N -0.499 5.499 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.166 0.834 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.048 0.952 42 H 0.058 0.942 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.023 0.977 46 H 0.032 0.968 47 H 0.249 0.751 48 H 0.016 0.984 49 H 0.048 0.952 50 H 0.188 0.812 51 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.572 10.762 -5.989 19.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.099 4.099 4 C -0.002 4.002 5 C -0.150 4.150 6 C -0.116 4.116 7 C 0.393 3.607 8 O -0.398 6.398 9 N -0.376 5.376 10 C -0.005 4.005 11 C -0.222 4.222 12 C 0.051 3.949 13 H 0.139 0.861 14 C -0.222 4.222 15 C 0.058 3.942 16 N -0.337 5.337 17 C -0.379 4.379 18 H 0.093 0.907 19 C -0.239 4.239 20 N -0.581 5.581 21 Si 0.798 3.202 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.203 1.203 25 C -0.021 4.021 26 C -0.195 4.195 27 C 0.110 3.890 28 O -0.293 6.293 29 N -0.220 5.220 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.184 0.816 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.106 0.894 44 H 0.114 0.886 45 H 0.041 0.959 46 H 0.050 0.950 47 H 0.058 0.942 48 H 0.033 0.967 49 H 0.067 0.933 50 H 0.204 0.796 51 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -15.942 9.667 -6.221 19.655 hybrid contribution 1.751 -0.480 0.467 1.875 sum -14.192 9.187 -5.753 17.858 Atomic orbital electron populations 1.21734 0.93657 1.02161 1.02717 1.21422 0.97125 0.95505 1.01528 1.20710 0.85262 0.98758 1.05132 1.21447 0.98057 0.91640 0.89054 1.22143 0.91787 1.00892 1.00166 1.20632 0.95399 0.99672 0.95935 1.18183 0.78178 0.77696 0.86681 1.90718 1.67387 1.61337 1.20328 1.47331 1.29377 1.14323 1.46583 1.21670 1.03014 0.79119 0.96679 1.22198 0.99997 0.99680 1.00331 1.22136 0.89672 0.96044 0.87065 0.86116 1.24334 1.00750 1.00950 0.96172 1.21058 0.92238 0.91213 0.89734 1.44602 1.45611 1.42936 1.00570 1.19273 1.13969 1.12080 0.92578 0.90712 1.25423 1.01694 1.01516 0.95286 1.70084 1.45802 1.44686 0.97545 0.85231 0.79029 0.79048 0.76859 1.21116 1.21961 1.20342 1.22250 0.96990 0.93476 0.89424 1.23766 1.06295 0.94628 0.94795 1.19112 0.86727 0.91711 0.91427 1.84852 1.77093 1.41955 1.25447 1.66842 1.09673 1.18459 1.26989 0.91909 0.91403 0.92622 0.92971 0.93160 0.87379 0.88626 0.81619 0.88788 0.90279 0.89195 0.93317 0.92273 0.89372 0.88603 0.95854 0.94999 0.94163 0.96675 0.93338 0.79608 0.73151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.32 16 2 C -0.12 -2.31 5.79 30.60 0.18 -2.13 16 3 C -0.06 -1.11 5.61 29.85 0.17 -0.95 16 4 C 0.14 3.65 6.17 42.50 0.26 3.91 16 5 C -0.13 -3.46 9.47 22.62 0.21 -3.25 16 6 C -0.10 -3.40 5.02 -19.90 -0.10 -3.50 16 7 C 0.60 19.60 5.21 86.88 0.45 20.05 16 8 O -0.52 -19.17 17.39 -3.78 -0.07 -19.24 16 9 N -0.64 -17.97 2.55 -793.16 -2.02 -19.99 16 10 C 0.12 2.34 6.35 86.38 0.55 2.89 16 11 C -0.16 -2.66 10.24 71.98 0.74 -1.92 16 12 C 0.16 4.93 3.54 46.38 0.16 5.10 16 13 H 0.12 3.45 7.91 -2.38 -0.02 3.43 16 14 C -0.18 -6.16 5.84 31.78 0.19 -5.97 16 15 C 0.18 8.09 4.35 86.73 0.38 8.47 16 16 N -0.61 -29.52 2.95 -691.99 -2.04 -31.56 16 17 C -0.25 -13.62 10.28 84.03 0.86 -12.75 16 18 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 19 C -0.04 -2.43 5.49 84.86 0.47 -1.96 16 20 N -0.93 -52.21 10.31 21.65 0.22 -51.99 16 21 Si 0.97 45.01 29.55 68.60 2.03 47.04 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 C 0.10 4.26 5.84 86.85 0.51 4.77 16 26 C -0.17 -6.45 4.77 22.75 0.11 -6.35 16 27 C 0.29 10.72 7.73 84.78 0.66 11.38 16 28 O -0.49 -19.22 12.75 -90.08 -1.15 -20.36 16 29 N -0.50 -16.48 9.88 -297.16 -2.94 -19.41 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 1.25 7.95 -2.39 -0.02 1.23 16 34 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.11 1.37 7.86 -2.39 -0.02 1.35 16 36 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.17 3.41 7.94 -2.91 -0.02 3.39 16 38 H 0.09 1.60 7.98 -2.39 -0.02 1.58 16 39 H 0.08 1.62 7.63 -2.39 -0.02 1.60 16 40 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.10 3.25 3.04 -42.40 -0.13 3.12 16 45 H 0.02 1.16 7.38 -2.39 -0.02 1.14 16 46 H 0.03 1.55 6.11 -2.39 -0.01 1.53 16 47 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 48 H 0.02 0.69 4.84 -2.39 -0.01 0.68 16 49 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 50 H 0.19 7.69 1.37 -2.91 0.00 7.69 16 51 H 0.41 13.39 8.70 -74.06 -0.64 12.75 16 Total: -1.00 -68.39 394.57 0.73 -67.66 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 0.20 Total: 31.37 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 6.50 Total: 16.48 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -6.77 Total: -122.95 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -1.21 Total: -39.60 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -68.39 0.73 -67.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033983221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.837 kcal (2) G-P(sol) polarization free energy of solvation -68.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds