Wall clock time and date at job start Wed Apr 1 2020 04:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46791 * 2 1 4 4 C 1.50705 * 109.47091 * 119.99357 * 2 1 3 5 5 C 1.38361 * 119.40599 * 275.02530 * 4 2 1 6 6 C 1.38339 * 119.45275 * 179.97438 * 5 4 2 7 7 C 1.39982 * 118.35218 * 0.02562 * 6 5 4 8 8 C 1.47521 * 120.60109 * 180.02562 * 7 6 5 9 9 O 1.21589 * 120.00715 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99506 * 359.97438 * 8 7 6 11 11 C 1.46505 * 119.99810 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.32588 * 35.00332 * 11 10 8 13 13 C 1.47091 * 109.32868 * 154.65266 * 11 10 8 14 14 C 1.52570 * 114.32802 * 183.05996 * 13 11 10 15 15 C 1.50875 * 109.35482 * 274.98192 * 14 13 11 16 16 C 1.53953 * 110.09059 * 91.89255 * 15 14 13 17 17 N 1.47600 * 112.14059 * 319.43149 * 16 15 14 18 18 C 1.36942 * 118.64147 * 137.87149 * 17 16 15 19 19 H 1.08003 * 119.99779 * 206.50171 * 18 17 16 20 20 C 1.38808 * 120.00225 * 26.50080 * 18 17 16 21 21 N 1.31624 * 119.99856 * 15.68258 * 20 18 17 22 22 Si 1.86791 * 120.00177 * 195.68872 * 20 18 17 23 23 H 1.48500 * 109.47143 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47679 * 120.00027 * 22 20 18 25 25 H 1.48511 * 109.47177 * 240.00000 * 22 20 18 26 26 C 1.44662 * 122.54534 * 317.85729 * 17 16 15 27 27 C 1.40283 * 118.80612 * 359.97438 * 7 6 5 28 28 O 1.35427 * 119.79879 * 180.02562 * 27 7 6 29 29 N 1.31878 * 119.40437 * 95.00329 * 4 2 1 30 30 H 1.09001 * 109.47431 * 300.00021 * 1 2 3 31 31 H 1.08999 * 109.47206 * 60.00791 * 1 2 3 32 32 H 1.09001 * 109.46869 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47630 * 239.99721 * 2 1 3 34 34 H 1.09003 * 109.47644 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47291 * 299.99490 * 3 2 1 36 36 H 1.08996 * 109.47984 * 59.99526 * 3 2 1 37 37 H 1.07992 * 120.27256 * 359.97438 * 5 4 2 38 38 H 1.07999 * 120.82421 * 180.02562 * 6 5 4 39 39 H 0.96998 * 120.00066 * 0.02562 * 10 8 7 40 40 H 1.09009 * 108.51603 * 304.31852 * 13 11 10 41 41 H 1.09002 * 108.51125 * 61.96079 * 13 11 10 42 42 H 1.08997 * 109.48662 * 34.94958 * 14 13 11 43 43 H 1.08997 * 109.48955 * 155.01995 * 14 13 11 44 44 H 1.08996 * 109.37152 * 212.08037 * 15 14 13 45 45 H 1.09000 * 109.36900 * 331.82939 * 15 14 13 46 46 H 1.08997 * 108.94873 * 80.12189 * 16 15 14 47 47 H 1.09004 * 108.94427 * 198.74697 * 16 15 14 48 48 H 0.97001 * 119.99606 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.61945 * 330.84597 * 26 17 16 50 50 H 1.08993 * 109.32722 * 210.89647 * 26 17 16 51 51 H 0.96698 * 113.99876 * 269.99575 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 2.1592 -0.0082 2.4160 6 6 2.6197 -0.6593 3.5464 7 6 2.9434 -2.0175 3.4457 8 6 3.4384 -2.7606 4.6200 9 8 3.7167 -3.9400 4.5202 10 7 3.5830 -2.1319 5.8033 11 6 4.0751 -2.8697 6.9694 12 1 4.8094 -3.6074 6.6460 13 6 4.7091 -1.9308 7.9076 14 6 5.3295 -2.5914 9.1350 15 6 4.2681 -2.7828 10.1900 16 6 3.6209 -4.1720 10.0433 17 7 3.3965 -4.5347 8.6302 18 6 3.6789 -5.8128 8.2278 19 1 3.9416 -6.0093 7.1988 20 6 3.6275 -6.8558 9.1423 21 7 3.0211 -6.6880 10.2984 22 14 4.4192 -8.4972 8.7324 23 1 5.0308 -8.4281 7.3810 24 1 5.4692 -8.8049 9.7364 25 1 3.3862 -9.5640 8.7537 26 6 2.8902 -3.5928 7.6560 27 6 2.7875 -2.6596 2.2082 28 8 3.0941 -3.9732 2.0882 29 7 2.3426 -1.9900 1.1582 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1299 1.4427 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6765 1.9565 0.8899 37 1 1.9009 1.0395 2.4585 38 1 2.7269 -0.1329 4.4833 39 1 3.3614 -1.1909 5.8829 40 1 5.4892 -1.3848 7.3769 41 1 3.9569 -1.2173 8.2443 42 1 5.7439 -3.5601 8.8560 43 1 6.1227 -1.9557 9.5283 44 1 4.7207 -2.6975 11.1779 45 1 3.5023 -2.0155 10.0758 46 1 4.2729 -4.9163 10.5005 47 1 2.6641 -4.1736 10.5654 48 1 2.9849 -7.4170 10.9373 49 1 2.2555 -2.8586 8.1522 50 1 2.3077 -4.1276 6.9059 51 1 4.0129 -4.1414 1.8381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034432414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:33 Heat of formation + Delta-G solvation = -23.854178 kcal Electronic energy + Delta-G solvation = -31287.366226 eV Core-core repulsion = 27187.485051 eV Total energy + Delta-G solvation = -4099.881175 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.07345 -39.38391 -37.85770 -37.26974 -35.36830 -34.53039 -33.31991 -32.75854 -30.90701 -30.37982 -29.41506 -27.57578 -26.05278 -25.14656 -24.15111 -23.52182 -22.96337 -21.37306 -20.34158 -20.20602 -19.15334 -18.50877 -17.62899 -17.23463 -16.56129 -15.98517 -15.79832 -15.36239 -14.99800 -14.80707 -14.52567 -14.25299 -14.15891 -13.91818 -13.63991 -13.51420 -13.25894 -13.09113 -12.68796 -12.58920 -12.49983 -12.42234 -12.08662 -11.91221 -11.72334 -11.57304 -11.50379 -11.26086 -11.02838 -10.89546 -10.75959 -10.52566 -10.17667 -10.11359 -10.08646 -9.97470 -9.70516 -9.62218 -9.55090 -9.36849 -9.04723 -8.77948 -8.28639 -6.59985 -5.70796 -3.14030 0.42595 0.87747 2.88979 3.22278 3.40070 3.44298 3.52292 3.57897 3.68312 4.13278 4.30976 4.56204 4.59803 4.66031 4.70426 4.78321 4.86872 5.15193 5.23139 5.25402 5.27613 5.36263 5.39064 5.45669 5.46971 5.53379 5.55451 5.58986 5.74073 5.77100 5.85566 5.90516 5.99733 6.03492 6.13318 6.18195 6.30510 6.38653 6.59999 6.62322 6.71156 6.76194 6.83788 6.94066 7.12069 7.43352 7.47571 7.67851 7.75531 7.77905 7.96956 8.49513 8.56004 9.32387 9.97209 10.41101 11.37017 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015739 B = 0.002630 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.612922 B =10641.847082 C =11797.407944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C -0.148 4.148 4 C 0.178 3.822 5 C -0.192 4.192 6 C -0.029 4.029 7 C -0.202 4.202 8 C 0.554 3.446 9 O -0.506 6.506 10 N -0.719 5.719 11 C 0.116 3.884 12 H 0.089 0.911 13 C -0.112 4.112 14 C -0.100 4.100 15 C -0.143 4.143 16 C 0.176 3.824 17 N -0.584 5.584 18 C -0.253 4.253 19 H 0.071 0.929 20 C 0.003 3.997 21 N -0.907 5.907 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.157 3.843 27 C 0.373 3.627 28 O -0.457 6.457 29 N -0.508 5.508 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.388 0.612 40 H 0.047 0.953 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.044 0.956 46 H 0.076 0.924 47 H 0.024 0.976 48 H 0.251 0.749 49 H 0.031 0.969 50 H 0.049 0.951 51 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.100 20.812 -15.705 26.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 C -0.205 4.205 4 C 0.040 3.960 5 C -0.211 4.211 6 C -0.055 4.055 7 C -0.209 4.209 8 C 0.339 3.661 9 O -0.381 6.381 10 N -0.371 5.371 11 C 0.009 3.991 12 H 0.108 0.892 13 C -0.150 4.150 14 C -0.139 4.139 15 C -0.182 4.182 16 C 0.051 3.949 17 N -0.304 5.304 18 C -0.382 4.382 19 H 0.088 0.912 20 C -0.195 4.195 21 N -0.552 5.552 22 Si 0.729 3.271 23 H -0.201 1.201 24 H -0.217 1.217 25 H -0.218 1.218 26 C 0.028 3.972 27 C 0.193 3.807 28 O -0.264 6.264 29 N -0.227 5.227 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.222 0.778 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.042 0.958 48 H 0.061 0.939 49 H 0.049 0.951 50 H 0.067 0.933 51 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -0.554 19.192 -16.198 25.119 hybrid contribution 0.778 0.042 0.643 1.010 sum 0.223 19.234 -15.555 24.737 Atomic orbital electron populations 1.21813 0.93190 1.02692 1.02330 1.20148 0.96511 0.95459 0.94833 1.21939 1.01457 0.94580 1.02561 1.21170 0.91669 0.88284 0.94920 1.21891 1.04143 1.02164 0.92931 1.21725 0.92284 0.92478 0.98983 1.21305 1.07997 0.95068 0.96523 1.17758 0.79045 0.86915 0.82412 1.90885 1.48505 1.14518 1.84179 1.46083 1.67675 1.13371 1.09921 1.21285 1.00002 0.93926 0.83849 0.89248 1.20583 0.99232 0.98199 0.96948 1.20826 0.97429 1.01239 0.94371 1.22080 0.97661 1.00864 0.97631 1.21059 0.98093 0.91144 0.84637 1.43617 1.74211 1.07742 1.04874 1.19364 1.39735 0.83323 0.95822 0.91170 1.25018 0.99398 0.97628 0.97446 1.70093 1.44227 1.31864 1.09002 0.86250 0.78885 0.84049 0.77875 1.20075 1.21689 1.21803 1.20928 0.92020 0.92113 0.92188 1.19171 0.90469 0.84305 0.86744 1.84753 1.34288 1.16560 1.90803 1.67106 1.14319 1.08895 1.32359 0.92283 0.91621 0.92080 0.88921 0.92218 0.91602 0.91935 0.83787 0.84010 0.77814 0.93449 0.92870 0.90415 0.93394 0.92899 0.93730 0.90613 0.95772 0.93869 0.95101 0.93301 0.73514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.17 37.16 0.34 -0.59 16 2 C -0.05 -0.36 3.23 -91.77 -0.30 -0.66 16 3 C -0.15 -0.72 8.61 37.16 0.32 -0.40 16 4 C 0.18 1.78 5.79 -82.52 -0.48 1.30 16 5 C -0.19 -1.60 9.15 -39.50 -0.36 -1.96 16 6 C -0.03 -0.27 9.64 -38.89 -0.37 -0.65 16 7 C -0.20 -2.71 5.90 -104.69 -0.62 -3.33 16 8 C 0.55 9.12 7.72 -12.48 -0.10 9.02 16 9 O -0.51 -10.61 14.85 -16.48 -0.24 -10.86 16 10 N -0.72 -10.40 5.01 -56.67 -0.28 -10.69 16 11 C 0.12 2.05 2.34 -69.78 -0.16 1.89 16 12 H 0.09 1.91 7.57 -51.93 -0.39 1.52 16 13 C -0.11 -1.68 4.55 -29.79 -0.14 -1.82 16 14 C -0.10 -1.68 5.51 -28.02 -0.15 -1.84 16 15 C -0.14 -2.60 5.71 -27.30 -0.16 -2.75 16 16 C 0.18 4.15 4.66 -2.94 -0.01 4.13 16 17 N -0.58 -14.59 2.27 -172.03 -0.39 -14.98 16 18 C -0.25 -7.13 9.45 -15.06 -0.14 -7.27 16 19 H 0.07 2.06 7.88 -52.48 -0.41 1.65 16 20 C 0.00 0.09 4.87 -17.43 -0.08 0.00 16 21 N -0.91 -26.68 11.01 55.49 0.61 -26.07 16 22 Si 0.90 22.65 29.58 -169.99 -5.03 17.62 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 26 C 0.16 3.39 5.24 -4.04 -0.02 3.37 16 27 C 0.37 5.35 7.77 -16.61 -0.13 5.22 16 28 O -0.46 -6.96 11.66 -39.74 -0.46 -7.43 16 29 N -0.51 -6.61 10.28 -9.21 -0.09 -6.71 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.06 0.25 6.47 -51.93 -0.34 -0.09 16 37 H 0.14 0.76 6.28 -52.49 -0.33 0.43 16 38 H 0.14 0.93 6.51 -52.49 -0.34 0.58 16 39 H 0.39 4.13 6.68 -40.82 -0.27 3.86 16 40 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 41 H 0.05 0.73 7.34 -51.93 -0.38 0.34 16 42 H 0.08 1.54 7.48 -51.93 -0.39 1.15 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.04 0.75 7.31 -51.93 -0.38 0.37 16 46 H 0.08 2.00 6.33 -51.93 -0.33 1.67 16 47 H 0.02 0.62 8.03 -51.93 -0.42 0.20 16 48 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.03 0.62 8.05 -51.93 -0.42 0.20 16 50 H 0.05 1.18 7.97 -51.93 -0.41 0.77 16 51 H 0.41 4.46 9.06 45.56 0.41 4.88 16 LS Contribution 399.85 15.07 6.03 6.03 Total: -1.00 -34.80 399.85 -9.77 -44.57 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.34 Total: 4.84 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -2.56 Total: 3.67 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.16 Total: -58.44 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.71 Total: -18.28 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.03 Total: 17.62 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.80 -9.77 -44.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034432414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.716 kcal (2) G-P(sol) polarization free energy of solvation -34.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds