Wall clock time and date at job start Wed Apr 1 2020 04:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46791 * 2 1 4 4 C 1.50705 * 109.47091 * 119.99357 * 2 1 3 5 5 C 1.38361 * 119.40599 * 275.02530 * 4 2 1 6 6 C 1.38339 * 119.45275 * 179.97438 * 5 4 2 7 7 C 1.39982 * 118.35218 * 0.02562 * 6 5 4 8 8 C 1.47521 * 120.60109 * 180.02562 * 7 6 5 9 9 O 1.21589 * 120.00715 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99506 * 359.97438 * 8 7 6 11 11 C 1.46505 * 119.99810 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.32588 * 35.00332 * 11 10 8 13 13 C 1.47091 * 109.32868 * 154.65266 * 11 10 8 14 14 C 1.52570 * 114.32802 * 183.05996 * 13 11 10 15 15 C 1.50875 * 109.35482 * 274.98192 * 14 13 11 16 16 C 1.53953 * 110.09059 * 91.89255 * 15 14 13 17 17 N 1.47600 * 112.14059 * 319.43149 * 16 15 14 18 18 C 1.36942 * 118.64147 * 137.87149 * 17 16 15 19 19 H 1.08003 * 119.99779 * 206.50171 * 18 17 16 20 20 C 1.38808 * 120.00225 * 26.50080 * 18 17 16 21 21 N 1.31624 * 119.99856 * 15.68258 * 20 18 17 22 22 Si 1.86791 * 120.00177 * 195.68872 * 20 18 17 23 23 H 1.48500 * 109.47143 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47679 * 120.00027 * 22 20 18 25 25 H 1.48511 * 109.47177 * 240.00000 * 22 20 18 26 26 C 1.44662 * 122.54534 * 317.85729 * 17 16 15 27 27 C 1.40283 * 118.80612 * 359.97438 * 7 6 5 28 28 O 1.35427 * 119.79879 * 180.02562 * 27 7 6 29 29 N 1.31878 * 119.40437 * 95.00329 * 4 2 1 30 30 H 1.09001 * 109.47431 * 300.00021 * 1 2 3 31 31 H 1.08999 * 109.47206 * 60.00791 * 1 2 3 32 32 H 1.09001 * 109.46869 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47630 * 239.99721 * 2 1 3 34 34 H 1.09003 * 109.47644 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47291 * 299.99490 * 3 2 1 36 36 H 1.08996 * 109.47984 * 59.99526 * 3 2 1 37 37 H 1.07992 * 120.27256 * 359.97438 * 5 4 2 38 38 H 1.07999 * 120.82421 * 180.02562 * 6 5 4 39 39 H 0.96998 * 120.00066 * 0.02562 * 10 8 7 40 40 H 1.09009 * 108.51603 * 304.31852 * 13 11 10 41 41 H 1.09002 * 108.51125 * 61.96079 * 13 11 10 42 42 H 1.08997 * 109.48662 * 34.94958 * 14 13 11 43 43 H 1.08997 * 109.48955 * 155.01995 * 14 13 11 44 44 H 1.08996 * 109.37152 * 212.08037 * 15 14 13 45 45 H 1.09000 * 109.36900 * 331.82939 * 15 14 13 46 46 H 1.08997 * 108.94873 * 80.12189 * 16 15 14 47 47 H 1.09004 * 108.94427 * 198.74697 * 16 15 14 48 48 H 0.97001 * 119.99606 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.61945 * 330.84597 * 26 17 16 50 50 H 1.08993 * 109.32722 * 210.89647 * 26 17 16 51 51 H 0.96698 * 113.99876 * 269.99575 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 2.1592 -0.0082 2.4160 6 6 2.6197 -0.6593 3.5464 7 6 2.9434 -2.0175 3.4457 8 6 3.4384 -2.7606 4.6200 9 8 3.7167 -3.9400 4.5202 10 7 3.5830 -2.1319 5.8033 11 6 4.0751 -2.8697 6.9694 12 1 4.8094 -3.6074 6.6460 13 6 4.7091 -1.9308 7.9076 14 6 5.3295 -2.5914 9.1350 15 6 4.2681 -2.7828 10.1900 16 6 3.6209 -4.1720 10.0433 17 7 3.3965 -4.5347 8.6302 18 6 3.6789 -5.8128 8.2278 19 1 3.9416 -6.0093 7.1988 20 6 3.6275 -6.8558 9.1423 21 7 3.0211 -6.6880 10.2984 22 14 4.4192 -8.4972 8.7324 23 1 5.0308 -8.4281 7.3810 24 1 5.4692 -8.8049 9.7364 25 1 3.3862 -9.5640 8.7537 26 6 2.8902 -3.5928 7.6560 27 6 2.7875 -2.6596 2.2082 28 8 3.0941 -3.9732 2.0882 29 7 2.3426 -1.9900 1.1582 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1299 1.4427 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6765 1.9565 0.8899 37 1 1.9009 1.0395 2.4585 38 1 2.7269 -0.1329 4.4833 39 1 3.3614 -1.1909 5.8829 40 1 5.4892 -1.3848 7.3769 41 1 3.9569 -1.2173 8.2443 42 1 5.7439 -3.5601 8.8560 43 1 6.1227 -1.9557 9.5283 44 1 4.7207 -2.6975 11.1779 45 1 3.5023 -2.0155 10.0758 46 1 4.2729 -4.9163 10.5005 47 1 2.6641 -4.1736 10.5654 48 1 2.9849 -7.4170 10.9373 49 1 2.2555 -2.8586 8.1522 50 1 2.3077 -4.1276 6.9059 51 1 4.0129 -4.1414 1.8381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034432414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:32 Heat of formation + Delta-G solvation = -49.433235 kcal Electronic energy + Delta-G solvation = -31288.475417 eV Core-core repulsion = 27187.485051 eV Total energy + Delta-G solvation = -4100.990366 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.03880 -40.67443 -39.19332 -38.45124 -36.27346 -36.01502 -34.86028 -33.76910 -32.86622 -31.68153 -30.47363 -27.99909 -27.92484 -26.32527 -25.57194 -24.83504 -24.23837 -22.32699 -21.65188 -21.40465 -20.83908 -19.50951 -18.72259 -18.61250 -18.18765 -17.26007 -16.90875 -16.49680 -16.40593 -16.23647 -15.76777 -15.67444 -15.24010 -15.08740 -14.81660 -14.63167 -14.43125 -14.22499 -14.08954 -13.91763 -13.78878 -13.38484 -13.11361 -13.01973 -12.86347 -12.83731 -12.81174 -12.46696 -12.40992 -12.30296 -12.04779 -12.04255 -11.81044 -11.66029 -11.46289 -11.38992 -11.14441 -11.11233 -11.01432 -10.54473 -10.42262 -10.18984 -9.85588 -8.64909 -7.89528 -5.34851 -0.49435 0.06740 1.38590 1.40906 1.52916 1.80763 2.04951 2.44088 2.49793 2.70255 3.23078 3.36289 3.61122 3.66084 3.74253 3.91853 3.92647 4.10736 4.11632 4.15474 4.26022 4.28035 4.41800 4.44069 4.51473 4.61909 4.70833 4.76666 4.79613 4.84455 4.89453 4.96416 5.00603 5.05374 5.05629 5.12220 5.22590 5.23166 5.27547 5.35989 5.37746 5.42049 5.45068 5.47471 5.62691 5.65249 5.71712 5.83368 6.39163 6.48032 6.59834 6.82076 7.16947 7.28934 7.93270 8.27723 9.14850 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015739 B = 0.002630 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.612922 B =10641.847082 C =11797.407944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.050 4.050 3 C -0.143 4.143 4 C 0.172 3.828 5 C -0.176 4.176 6 C -0.015 4.015 7 C -0.222 4.222 8 C 0.552 3.448 9 O -0.565 6.565 10 N -0.701 5.701 11 C 0.137 3.863 12 H 0.045 0.955 13 C -0.108 4.108 14 C -0.098 4.098 15 C -0.130 4.130 16 C 0.183 3.817 17 N -0.597 5.597 18 C -0.258 4.258 19 H 0.046 0.954 20 C -0.044 4.044 21 N -0.931 5.931 22 Si 0.957 3.043 23 H -0.279 1.279 24 H -0.281 1.281 25 H -0.291 1.291 26 C 0.158 3.842 27 C 0.348 3.652 28 O -0.484 6.484 29 N -0.533 5.533 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.189 0.811 38 H 0.181 0.819 39 H 0.413 0.587 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.037 0.963 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.039 0.961 47 H -0.006 1.006 48 H 0.250 0.750 49 H 0.052 0.948 50 H 0.008 0.992 51 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.010 25.812 -15.955 30.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 C -0.201 4.201 4 C 0.034 3.966 5 C -0.195 4.195 6 C -0.041 4.041 7 C -0.229 4.229 8 C 0.339 3.661 9 O -0.444 6.444 10 N -0.354 5.354 11 C 0.030 3.970 12 H 0.064 0.936 13 C -0.146 4.146 14 C -0.137 4.137 15 C -0.169 4.169 16 C 0.059 3.941 17 N -0.319 5.319 18 C -0.389 4.389 19 H 0.064 0.936 20 C -0.240 4.240 21 N -0.577 5.577 22 Si 0.785 3.215 23 H -0.204 1.204 24 H -0.207 1.207 25 H -0.218 1.218 26 C 0.030 3.970 27 C 0.169 3.831 28 O -0.293 6.293 29 N -0.253 5.253 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.206 0.794 38 H 0.198 0.802 39 H 0.251 0.749 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.056 0.944 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.012 0.988 48 H 0.059 0.941 49 H 0.070 0.930 50 H 0.027 0.973 51 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -0.447 24.272 -16.462 29.332 hybrid contribution 0.651 -1.442 0.587 1.687 sum 0.204 22.830 -15.875 27.808 Atomic orbital electron populations 1.21815 0.92581 1.01593 1.03829 1.20266 0.96870 0.96735 0.93089 1.21936 1.01339 0.92618 1.04171 1.21882 0.90384 0.87425 0.96915 1.22341 1.01927 1.03842 0.91383 1.22134 0.90436 0.90482 1.01017 1.21064 1.10415 0.96755 0.94667 1.18287 0.77861 0.86400 0.83536 1.90859 1.51035 1.17293 1.85169 1.45768 1.66947 1.14257 1.08388 1.20709 0.97123 0.94101 0.85088 0.93626 1.20528 1.00730 0.97616 0.95748 1.20812 0.97876 1.00212 0.94768 1.21939 0.98418 0.97185 0.99331 1.20884 0.96269 0.93857 0.83117 1.43749 1.74756 1.07414 1.05978 1.19351 1.39320 0.85332 0.94894 0.93586 1.25633 1.00272 1.00471 0.97579 1.70217 1.45349 1.32536 1.09612 0.85366 0.78095 0.80475 0.77522 1.20393 1.20671 1.21754 1.21014 0.93470 0.91715 0.90839 1.19398 0.91794 0.84114 0.87770 1.84696 1.35327 1.18222 1.91101 1.67121 1.15293 1.10597 1.32239 0.91194 0.89739 0.94479 0.90051 0.92405 0.90227 0.90160 0.79439 0.80217 0.74869 0.90300 0.89774 0.94397 0.89660 0.91043 0.91395 0.94237 0.98773 0.94077 0.93005 0.97346 0.72529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.17 71.98 0.66 -0.85 16 2 C -0.05 -0.61 3.23 -11.54 -0.04 -0.64 16 3 C -0.14 -0.82 8.61 71.98 0.62 -0.20 16 4 C 0.17 3.10 5.79 42.58 0.25 3.34 16 5 C -0.18 -2.21 9.15 22.32 0.20 -2.00 16 6 C -0.02 -0.24 9.64 22.72 0.22 -0.02 16 7 C -0.22 -5.86 5.90 -19.91 -0.12 -5.97 16 8 C 0.55 18.53 7.72 86.69 0.67 19.20 16 9 O -0.56 -25.47 14.85 16.82 0.25 -25.22 16 10 N -0.70 -19.25 5.01 -451.47 -2.26 -21.51 16 11 C 0.14 4.81 2.34 43.79 0.10 4.92 16 12 H 0.05 2.04 7.57 -2.39 -0.02 2.02 16 13 C -0.11 -2.88 4.55 28.61 0.13 -2.75 16 14 C -0.10 -3.05 5.51 29.76 0.16 -2.88 16 15 C -0.13 -4.43 5.71 30.23 0.17 -4.26 16 16 C 0.18 8.87 4.66 86.49 0.40 9.27 16 17 N -0.60 -31.06 2.27 -698.17 -1.59 -32.65 16 18 C -0.26 -15.42 9.45 84.03 0.79 -14.63 16 19 H 0.05 2.92 7.88 -2.91 -0.02 2.90 16 20 C -0.04 -2.63 4.87 84.86 0.41 -2.21 16 21 N -0.93 -56.95 11.01 21.65 0.24 -56.72 16 22 Si 0.96 48.60 29.58 68.60 2.03 50.63 16 23 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 25 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 26 C 0.16 6.95 5.24 87.36 0.46 7.41 16 27 C 0.35 10.40 7.77 85.13 0.66 11.06 16 28 O -0.48 -16.23 11.66 -66.41 -0.77 -17.00 16 29 N -0.53 -13.99 10.28 -296.05 -3.04 -17.04 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.08 0.18 6.47 -2.39 -0.02 0.17 16 37 H 0.19 0.74 6.28 -2.91 -0.02 0.72 16 38 H 0.18 1.31 6.51 -2.91 -0.02 1.29 16 39 H 0.41 7.11 6.68 -92.71 -0.62 6.49 16 40 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.08 1.80 7.34 -2.39 -0.02 1.78 16 42 H 0.04 1.49 7.48 -2.39 -0.02 1.47 16 43 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.07 2.02 7.31 -2.39 -0.02 2.01 16 46 H 0.04 2.17 6.33 -2.39 -0.02 2.15 16 47 H -0.01 -0.31 8.03 -2.39 -0.02 -0.33 16 48 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 49 H 0.05 2.03 8.05 -2.39 -0.02 2.02 16 50 H 0.01 0.42 7.97 -2.39 -0.02 0.40 16 51 H 0.41 10.61 9.06 -74.06 -0.67 9.94 16 Total: -1.00 -85.07 399.85 0.28 -84.79 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -0.33 Total: 15.92 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 5.76 Total: 18.78 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -6.65 Total: -127.91 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -0.52 Total: -42.22 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.03 Total: 50.63 kcal Total: -85.07 0.28 -84.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034432414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.359 kcal (2) G-P(sol) polarization free energy of solvation -85.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds