Wall clock time and date at job start Wed Apr 1 2020 04:44:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52998 * 109.46791 * 2 1
4 4 C 1.50705 * 109.47091 * 119.99357 * 2 1 3
5 5 C 1.38361 * 119.40599 * 275.02530 * 4 2 1
6 6 C 1.38339 * 119.45275 * 179.97438 * 5 4 2
7 7 C 1.39982 * 118.35218 * 0.02562 * 6 5 4
8 8 C 1.47521 * 120.60109 * 180.02562 * 7 6 5
9 9 O 1.21589 * 120.00715 * 180.02562 * 8 7 6
10 10 N 1.34779 * 119.99506 * 359.97438 * 8 7 6
11 11 C 1.46505 * 119.99810 * 180.02562 * 10 8 7
12 12 H 1.08996 * 109.32588 * 35.00332 * 11 10 8
13 13 C 1.47091 * 109.32868 * 154.65266 * 11 10 8
14 14 C 1.52570 * 114.32802 * 183.05996 * 13 11 10
15 15 C 1.50875 * 109.35482 * 274.98192 * 14 13 11
16 16 C 1.53953 * 110.09059 * 91.89255 * 15 14 13
17 17 N 1.47600 * 112.14059 * 319.43149 * 16 15 14
18 18 C 1.36942 * 118.64147 * 137.87149 * 17 16 15
19 19 H 1.08003 * 119.99779 * 206.50171 * 18 17 16
20 20 C 1.38808 * 120.00225 * 26.50080 * 18 17 16
21 21 N 1.31624 * 119.99856 * 15.68258 * 20 18 17
22 22 Si 1.86791 * 120.00177 * 195.68872 * 20 18 17
23 23 H 1.48500 * 109.47143 * 359.97438 * 22 20 18
24 24 H 1.48502 * 109.47679 * 120.00027 * 22 20 18
25 25 H 1.48511 * 109.47177 * 240.00000 * 22 20 18
26 26 C 1.44662 * 122.54534 * 317.85729 * 17 16 15
27 27 C 1.40283 * 118.80612 * 359.97438 * 7 6 5
28 28 O 1.35427 * 119.79879 * 180.02562 * 27 7 6
29 29 N 1.31878 * 119.40437 * 95.00329 * 4 2 1
30 30 H 1.09001 * 109.47431 * 300.00021 * 1 2 3
31 31 H 1.08999 * 109.47206 * 60.00791 * 1 2 3
32 32 H 1.09001 * 109.46869 * 180.02562 * 1 2 3
33 33 H 1.08993 * 109.47630 * 239.99721 * 2 1 3
34 34 H 1.09003 * 109.47644 * 179.97438 * 3 2 1
35 35 H 1.09004 * 109.47291 * 299.99490 * 3 2 1
36 36 H 1.08996 * 109.47984 * 59.99526 * 3 2 1
37 37 H 1.07992 * 120.27256 * 359.97438 * 5 4 2
38 38 H 1.07999 * 120.82421 * 180.02562 * 6 5 4
39 39 H 0.96998 * 120.00066 * 0.02562 * 10 8 7
40 40 H 1.09009 * 108.51603 * 304.31852 * 13 11 10
41 41 H 1.09002 * 108.51125 * 61.96079 * 13 11 10
42 42 H 1.08997 * 109.48662 * 34.94958 * 14 13 11
43 43 H 1.08997 * 109.48955 * 155.01995 * 14 13 11
44 44 H 1.08996 * 109.37152 * 212.08037 * 15 14 13
45 45 H 1.09000 * 109.36900 * 331.82939 * 15 14 13
46 46 H 1.08997 * 108.94873 * 80.12189 * 16 15 14
47 47 H 1.09004 * 108.94427 * 198.74697 * 16 15 14
48 48 H 0.97001 * 119.99606 * 179.97438 * 21 20 18
49 49 H 1.09001 * 109.61945 * 330.84597 * 26 17 16
50 50 H 1.08993 * 109.32722 * 210.89647 * 26 17 16
51 51 H 0.96698 * 113.99876 * 269.99575 * 28 27 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0323 -0.7103 1.2306
5 6 2.1592 -0.0082 2.4160
6 6 2.6197 -0.6593 3.5464
7 6 2.9434 -2.0175 3.4457
8 6 3.4384 -2.7606 4.6200
9 8 3.7167 -3.9400 4.5202
10 7 3.5830 -2.1319 5.8033
11 6 4.0751 -2.8697 6.9694
12 1 4.8094 -3.6074 6.6460
13 6 4.7091 -1.9308 7.9076
14 6 5.3295 -2.5914 9.1350
15 6 4.2681 -2.7828 10.1900
16 6 3.6209 -4.1720 10.0433
17 7 3.3965 -4.5347 8.6302
18 6 3.6789 -5.8128 8.2278
19 1 3.9416 -6.0093 7.1988
20 6 3.6275 -6.8558 9.1423
21 7 3.0211 -6.6880 10.2984
22 14 4.4192 -8.4972 8.7324
23 1 5.0308 -8.4281 7.3810
24 1 5.4692 -8.8049 9.7364
25 1 3.3862 -9.5640 8.7537
26 6 2.8902 -3.5928 7.6560
27 6 2.7875 -2.6596 2.2082
28 8 3.0941 -3.9732 2.0882
29 7 2.3426 -1.9900 1.1582
30 1 -0.3634 0.5138 0.8900
31 1 -0.3633 0.5137 -0.8900
32 1 -0.3633 -1.0277 0.0005
33 1 1.8934 -0.5138 -0.8899
34 1 3.1299 1.4427 0.0005
35 1 1.6766 1.9563 -0.8900
36 1 1.6765 1.9565 0.8899
37 1 1.9009 1.0395 2.4585
38 1 2.7269 -0.1329 4.4833
39 1 3.3614 -1.1909 5.8829
40 1 5.4892 -1.3848 7.3769
41 1 3.9569 -1.2173 8.2443
42 1 5.7439 -3.5601 8.8560
43 1 6.1227 -1.9557 9.5283
44 1 4.7207 -2.6975 11.1779
45 1 3.5023 -2.0155 10.0758
46 1 4.2729 -4.9163 10.5005
47 1 2.6641 -4.1736 10.5654
48 1 2.9849 -7.4170 10.9373
49 1 2.2555 -2.8586 8.1522
50 1 2.3077 -4.1276 6.9059
51 1 4.0129 -4.1414 1.8381
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001034432414.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:44:32
Heat of formation + Delta-G solvation = -49.433235 kcal
Electronic energy + Delta-G solvation = -31288.475417 eV
Core-core repulsion = 27187.485051 eV
Total energy + Delta-G solvation = -4100.990366 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.09 seconds
Orbital eigenvalues (eV)
-42.03880 -40.67443 -39.19332 -38.45124 -36.27346 -36.01502 -34.86028 -33.76910
-32.86622 -31.68153 -30.47363 -27.99909 -27.92484 -26.32527 -25.57194 -24.83504
-24.23837 -22.32699 -21.65188 -21.40465 -20.83908 -19.50951 -18.72259 -18.61250
-18.18765 -17.26007 -16.90875 -16.49680 -16.40593 -16.23647 -15.76777 -15.67444
-15.24010 -15.08740 -14.81660 -14.63167 -14.43125 -14.22499 -14.08954 -13.91763
-13.78878 -13.38484 -13.11361 -13.01973 -12.86347 -12.83731 -12.81174 -12.46696
-12.40992 -12.30296 -12.04779 -12.04255 -11.81044 -11.66029 -11.46289 -11.38992
-11.14441 -11.11233 -11.01432 -10.54473 -10.42262 -10.18984 -9.85588 -8.64909
-7.89528 -5.34851 -0.49435 0.06740 1.38590 1.40906 1.52916 1.80763
2.04951 2.44088 2.49793 2.70255 3.23078 3.36289 3.61122 3.66084
3.74253 3.91853 3.92647 4.10736 4.11632 4.15474 4.26022 4.28035
4.41800 4.44069 4.51473 4.61909 4.70833 4.76666 4.79613 4.84455
4.89453 4.96416 5.00603 5.05374 5.05629 5.12220 5.22590 5.23166
5.27547 5.35989 5.37746 5.42049 5.45068 5.47471 5.62691 5.65249
5.71712 5.83368 6.39163 6.48032 6.59834 6.82076 7.16947 7.28934
7.93270 8.27723 9.14850
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.015739 B = 0.002630 C = 0.002373
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1778.612922 B =10641.847082 C =11797.407944
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.050 4.050
3 C -0.143 4.143
4 C 0.172 3.828
5 C -0.176 4.176
6 C -0.015 4.015
7 C -0.222 4.222
8 C 0.552 3.448
9 O -0.565 6.565
10 N -0.701 5.701
11 C 0.137 3.863
12 H 0.045 0.955
13 C -0.108 4.108
14 C -0.098 4.098
15 C -0.130 4.130
16 C 0.183 3.817
17 N -0.597 5.597
18 C -0.258 4.258
19 H 0.046 0.954
20 C -0.044 4.044
21 N -0.931 5.931
22 Si 0.957 3.043
23 H -0.279 1.279
24 H -0.281 1.281
25 H -0.291 1.291
26 C 0.158 3.842
27 C 0.348 3.652
28 O -0.484 6.484
29 N -0.533 5.533
30 H 0.069 0.931
31 H 0.084 0.916
32 H 0.036 0.964
33 H 0.081 0.919
34 H 0.057 0.943
35 H 0.079 0.921
36 H 0.080 0.920
37 H 0.189 0.811
38 H 0.181 0.819
39 H 0.413 0.587
40 H 0.078 0.922
41 H 0.084 0.916
42 H 0.037 0.963
43 H 0.085 0.915
44 H 0.071 0.929
45 H 0.067 0.933
46 H 0.039 0.961
47 H -0.006 1.006
48 H 0.250 0.750
49 H 0.052 0.948
50 H 0.008 0.992
51 H 0.414 0.586
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.010 25.812 -15.955 30.345
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.070 4.070
3 C -0.201 4.201
4 C 0.034 3.966
5 C -0.195 4.195
6 C -0.041 4.041
7 C -0.229 4.229
8 C 0.339 3.661
9 O -0.444 6.444
10 N -0.354 5.354
11 C 0.030 3.970
12 H 0.064 0.936
13 C -0.146 4.146
14 C -0.137 4.137
15 C -0.169 4.169
16 C 0.059 3.941
17 N -0.319 5.319
18 C -0.389 4.389
19 H 0.064 0.936
20 C -0.240 4.240
21 N -0.577 5.577
22 Si 0.785 3.215
23 H -0.204 1.204
24 H -0.207 1.207
25 H -0.218 1.218
26 C 0.030 3.970
27 C 0.169 3.831
28 O -0.293 6.293
29 N -0.253 5.253
30 H 0.088 0.912
31 H 0.103 0.897
32 H 0.055 0.945
33 H 0.099 0.901
34 H 0.076 0.924
35 H 0.098 0.902
36 H 0.098 0.902
37 H 0.206 0.794
38 H 0.198 0.802
39 H 0.251 0.749
40 H 0.097 0.903
41 H 0.102 0.898
42 H 0.056 0.944
43 H 0.103 0.897
44 H 0.090 0.910
45 H 0.086 0.914
46 H 0.058 0.942
47 H 0.012 0.988
48 H 0.059 0.941
49 H 0.070 0.930
50 H 0.027 0.973
51 H 0.275 0.725
Dipole moment (debyes) X Y Z Total
from point charges -0.447 24.272 -16.462 29.332
hybrid contribution 0.651 -1.442 0.587 1.687
sum 0.204 22.830 -15.875 27.808
Atomic orbital electron populations
1.21815 0.92581 1.01593 1.03829 1.20266 0.96870 0.96735 0.93089
1.21936 1.01339 0.92618 1.04171 1.21882 0.90384 0.87425 0.96915
1.22341 1.01927 1.03842 0.91383 1.22134 0.90436 0.90482 1.01017
1.21064 1.10415 0.96755 0.94667 1.18287 0.77861 0.86400 0.83536
1.90859 1.51035 1.17293 1.85169 1.45768 1.66947 1.14257 1.08388
1.20709 0.97123 0.94101 0.85088 0.93626 1.20528 1.00730 0.97616
0.95748 1.20812 0.97876 1.00212 0.94768 1.21939 0.98418 0.97185
0.99331 1.20884 0.96269 0.93857 0.83117 1.43749 1.74756 1.07414
1.05978 1.19351 1.39320 0.85332 0.94894 0.93586 1.25633 1.00272
1.00471 0.97579 1.70217 1.45349 1.32536 1.09612 0.85366 0.78095
0.80475 0.77522 1.20393 1.20671 1.21754 1.21014 0.93470 0.91715
0.90839 1.19398 0.91794 0.84114 0.87770 1.84696 1.35327 1.18222
1.91101 1.67121 1.15293 1.10597 1.32239 0.91194 0.89739 0.94479
0.90051 0.92405 0.90227 0.90160 0.79439 0.80217 0.74869 0.90300
0.89774 0.94397 0.89660 0.91043 0.91395 0.94237 0.98773 0.94077
0.93005 0.97346 0.72529
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.51 9.17 71.98 0.66 -0.85 16
2 C -0.05 -0.61 3.23 -11.54 -0.04 -0.64 16
3 C -0.14 -0.82 8.61 71.98 0.62 -0.20 16
4 C 0.17 3.10 5.79 42.58 0.25 3.34 16
5 C -0.18 -2.21 9.15 22.32 0.20 -2.00 16
6 C -0.02 -0.24 9.64 22.72 0.22 -0.02 16
7 C -0.22 -5.86 5.90 -19.91 -0.12 -5.97 16
8 C 0.55 18.53 7.72 86.69 0.67 19.20 16
9 O -0.56 -25.47 14.85 16.82 0.25 -25.22 16
10 N -0.70 -19.25 5.01 -451.47 -2.26 -21.51 16
11 C 0.14 4.81 2.34 43.79 0.10 4.92 16
12 H 0.05 2.04 7.57 -2.39 -0.02 2.02 16
13 C -0.11 -2.88 4.55 28.61 0.13 -2.75 16
14 C -0.10 -3.05 5.51 29.76 0.16 -2.88 16
15 C -0.13 -4.43 5.71 30.23 0.17 -4.26 16
16 C 0.18 8.87 4.66 86.49 0.40 9.27 16
17 N -0.60 -31.06 2.27 -698.17 -1.59 -32.65 16
18 C -0.26 -15.42 9.45 84.03 0.79 -14.63 16
19 H 0.05 2.92 7.88 -2.91 -0.02 2.90 16
20 C -0.04 -2.63 4.87 84.86 0.41 -2.21 16
21 N -0.93 -56.95 11.01 21.65 0.24 -56.72 16
22 Si 0.96 48.60 29.58 68.60 2.03 50.63 16
23 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16
24 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16
25 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16
26 C 0.16 6.95 5.24 87.36 0.46 7.41 16
27 C 0.35 10.40 7.77 85.13 0.66 11.06 16
28 O -0.48 -16.23 11.66 -66.41 -0.77 -17.00 16
29 N -0.53 -13.99 10.28 -296.05 -3.04 -17.04 16
30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16
31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16
32 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16
33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16
34 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16
35 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16
36 H 0.08 0.18 6.47 -2.39 -0.02 0.17 16
37 H 0.19 0.74 6.28 -2.91 -0.02 0.72 16
38 H 0.18 1.31 6.51 -2.91 -0.02 1.29 16
39 H 0.41 7.11 6.68 -92.71 -0.62 6.49 16
40 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16
41 H 0.08 1.80 7.34 -2.39 -0.02 1.78 16
42 H 0.04 1.49 7.48 -2.39 -0.02 1.47 16
43 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16
44 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16
45 H 0.07 2.02 7.31 -2.39 -0.02 2.01 16
46 H 0.04 2.17 6.33 -2.39 -0.02 2.15 16
47 H -0.01 -0.31 8.03 -2.39 -0.02 -0.33 16
48 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16
49 H 0.05 2.03 8.05 -2.39 -0.02 2.02 16
50 H 0.01 0.42 7.97 -2.39 -0.02 0.40 16
51 H 0.41 10.61 9.06 -74.06 -0.67 9.94 16
Total: -1.00 -85.07 399.85 0.28 -84.79
By element:
Atomic # 1 Polarization: 16.26 SS G_CDS: -0.33 Total: 15.92 kcal
Atomic # 6 Polarization: 13.02 SS G_CDS: 5.76 Total: 18.78 kcal
Atomic # 7 Polarization: -121.26 SS G_CDS: -6.65 Total: -127.91 kcal
Atomic # 8 Polarization: -41.70 SS G_CDS: -0.52 Total: -42.22 kcal
Atomic # 14 Polarization: 48.60 SS G_CDS: 2.03 Total: 50.63 kcal
Total: -85.07 0.28 -84.79 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001034432414.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.359 kcal
(2) G-P(sol) polarization free energy of solvation -85.074 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.715 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.793 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.433 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds