Wall clock time and date at job start Wed Apr 1 2020 05:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47216 * 2 1 4 4 C 1.50703 * 109.47058 * 179.97438 * 3 2 1 5 5 C 1.35309 * 126.66438 * 90.31773 * 4 3 2 6 6 C 1.42277 * 103.92072 * 180.08301 * 5 4 3 7 7 C 1.48328 * 126.94065 * 179.88850 * 6 5 4 8 8 O 1.21498 * 119.99881 * 7.31227 * 7 6 5 9 9 N 1.34777 * 120.00301 * 187.30921 * 7 6 5 10 10 C 1.46928 * 120.55565 * 185.55328 * 9 7 6 11 11 C 1.53336 * 108.68780 * 125.62863 * 10 9 7 12 12 C 1.52106 * 109.44178 * 53.30721 * 11 10 9 13 13 C 1.54389 * 110.51234 * 64.08981 * 12 11 10 14 14 C 1.54452 * 102.87104 * 83.33086 * 13 12 11 15 15 N 1.47083 * 107.29432 * 21.50929 * 14 13 12 16 16 C 1.36939 * 125.62549 * 180.96873 * 15 14 13 17 17 H 1.08001 * 120.00121 * 176.48125 * 16 15 14 18 18 C 1.38818 * 119.99845 * 356.46994 * 16 15 14 19 19 N 1.31624 * 119.99653 * 159.36183 * 18 16 15 20 20 Si 1.86795 * 120.00241 * 339.36723 * 18 16 15 21 21 H 1.48500 * 109.47032 * 185.84331 * 20 18 16 22 22 H 1.48501 * 109.47181 * 305.84634 * 20 18 16 23 23 H 1.48504 * 109.47133 * 65.84908 * 20 18 16 24 24 C 1.47571 * 108.74603 * 1.22870 * 15 14 13 25 25 C 1.52106 * 111.59902 * 300.69104 * 12 11 10 26 26 C 1.46931 * 120.54872 * 5.53116 * 9 7 6 27 27 N 1.30987 * 106.12115 * 359.62436 * 6 5 4 28 28 O 1.20908 * 111.43676 * 0.24099 * 27 6 5 29 29 H 1.08994 * 109.47464 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47519 * 300.00632 * 1 2 3 31 31 H 1.09004 * 109.47073 * 60.00529 * 1 2 3 32 32 H 1.08997 * 109.47366 * 239.99715 * 2 1 3 33 33 H 1.09004 * 109.47073 * 119.99471 * 2 1 3 34 34 H 1.08997 * 109.47186 * 59.99604 * 3 2 1 35 35 H 1.09004 * 109.46668 * 299.99719 * 3 2 1 36 36 H 1.07999 * 128.04468 * 359.94468 * 5 4 3 37 37 H 1.09004 * 109.60266 * 5.86303 * 10 9 7 38 38 H 1.09003 * 109.60084 * 245.39208 * 10 9 7 39 39 H 1.08997 * 109.47715 * 293.31518 * 11 10 9 40 40 H 1.09000 * 109.47795 * 173.29479 * 11 10 9 41 41 H 1.09000 * 110.73006 * 324.98597 * 13 12 11 42 42 H 1.09006 * 110.72914 * 201.68043 * 13 12 11 43 43 H 1.08997 * 109.88198 * 262.08022 * 14 13 12 44 44 H 1.09006 * 109.87512 * 140.93039 * 14 13 12 45 45 H 0.96998 * 119.99941 * 5.01751 * 19 18 16 46 46 H 1.08994 * 110.37708 * 95.26502 * 24 15 14 47 47 H 1.09005 * 110.37618 * 217.60911 * 24 15 14 48 48 H 1.09000 * 109.47748 * 179.29639 * 25 12 11 49 49 H 1.09006 * 109.47647 * 299.31423 * 25 12 11 50 50 H 1.09005 * 109.59888 * 354.12700 * 26 9 7 51 51 H 1.09001 * 109.60096 * 114.60593 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3555 1.4483 -1.0844 6 6 5.6674 1.4433 -0.5338 7 6 6.9481 1.4442 -1.2820 8 8 6.9465 1.5835 -2.4889 9 7 8.1137 1.2905 -0.6230 10 6 9.3945 1.4104 -1.3328 11 6 10.2579 2.4549 -0.6153 12 6 10.3635 2.0978 0.8595 13 6 11.1016 0.7538 1.0392 14 6 12.5886 1.1685 0.9887 15 7 12.6547 2.6002 1.3190 16 6 13.7954 3.3566 1.3639 17 1 13.7331 4.4164 1.5622 18 6 15.0318 2.7610 1.1550 19 7 16.0633 3.4951 0.7950 20 14 15.2315 0.9180 1.3844 21 1 16.6640 0.5538 1.2414 22 1 14.7555 0.5332 2.7374 23 1 14.4338 0.2019 0.3567 24 6 11.2898 3.0856 1.6002 25 6 8.9955 2.0474 1.5226 26 6 8.1246 1.0006 0.8174 27 7 5.5158 1.4436 0.7673 28 8 4.3467 1.4432 1.0759 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9563 -0.8901 36 1 4.0711 1.4531 -2.1263 37 1 9.2150 1.7276 -2.3601 38 1 9.9062 0.4480 -1.3290 39 1 9.7999 3.4385 -0.7192 40 1 11.2539 2.4692 -1.0579 41 1 10.8636 0.0708 0.2238 42 1 10.8584 0.3059 2.0028 43 1 12.9865 1.0002 -0.0120 44 1 13.1588 0.5931 1.7181 45 1 15.9785 4.4601 0.7464 46 1 11.0925 3.0639 2.6719 47 1 11.1578 4.0946 1.2095 48 1 9.1102 1.7771 2.5724 49 1 8.5196 3.0253 1.4490 50 1 7.1079 1.0479 1.2076 51 1 8.5382 0.0065 0.9873 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035248668.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:43 Heat of formation + Delta-G solvation = 64.615132 kcal Electronic energy + Delta-G solvation = -31299.889982 eV Core-core repulsion = 27203.845124 eV Total energy + Delta-G solvation = -4096.044858 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.43213 -40.55370 -38.84513 -36.30644 -36.05150 -34.37946 -33.16852 -32.19797 -31.29006 -30.99839 -29.03844 -27.60124 -27.38976 -25.23655 -23.81067 -23.21619 -22.97946 -22.67313 -22.00373 -20.43779 -19.90413 -18.34456 -18.03877 -17.73757 -17.34063 -16.87776 -16.09618 -15.72563 -15.39859 -15.33650 -15.07612 -14.78368 -14.11544 -13.98023 -13.89561 -13.78837 -13.67795 -13.48150 -13.18209 -13.09456 -12.90450 -12.60213 -12.26488 -12.19010 -11.92315 -11.84989 -11.73619 -11.34019 -11.27618 -11.19677 -11.09217 -10.91136 -10.77371 -10.49041 -10.35675 -10.23583 -10.10142 -9.86397 -9.76270 -9.44445 -8.91383 -8.72350 -8.52868 -7.01995 -6.27870 -3.13926 0.77451 1.32178 2.45853 2.70759 2.92368 3.42852 3.51760 3.60999 3.72541 3.97682 4.36118 4.38409 4.49783 4.60986 4.63671 4.71086 4.78667 4.86507 4.93341 5.00009 5.05797 5.06373 5.14600 5.18614 5.19249 5.30248 5.36608 5.44491 5.50620 5.55748 5.56808 5.62968 5.66159 5.70138 5.74411 5.79787 5.93539 5.95970 6.02485 6.08539 6.24934 6.34156 6.36181 6.44847 6.53274 6.67923 6.79494 6.82699 7.15239 7.64355 7.70323 7.89614 8.36788 9.09105 9.62527 10.29103 11.22850 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029660 B = 0.002169 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.821568 B =12907.221348 C =13105.980201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.040 4.040 4 C -0.027 4.027 5 C -0.182 4.182 6 C -0.014 4.014 7 C 0.594 3.406 8 O -0.528 6.528 9 N -0.589 5.589 10 C 0.111 3.889 11 C -0.111 4.111 12 C -0.073 4.073 13 C -0.123 4.123 14 C 0.112 3.888 15 N -0.611 5.611 16 C -0.323 4.323 17 H 0.077 0.923 18 C -0.026 4.026 19 N -0.927 5.927 20 Si 1.071 2.929 21 H -0.302 1.302 22 H -0.300 1.300 23 H -0.283 1.283 24 C 0.148 3.852 25 C -0.111 4.111 26 C 0.079 3.921 27 N -0.326 5.326 28 O 0.113 5.887 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.180 0.820 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.046 0.954 44 H 0.026 0.974 45 H 0.260 0.740 46 H 0.022 0.978 47 H 0.043 0.957 48 H 0.078 0.922 49 H 0.065 0.935 50 H 0.122 0.878 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.453 -7.793 -1.200 33.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.078 4.078 4 C -0.090 4.090 5 C -0.204 4.204 6 C -0.173 4.173 7 C 0.379 3.621 8 O -0.404 6.404 9 N -0.321 5.321 10 C -0.010 4.010 11 C -0.150 4.150 12 C -0.074 4.074 13 C -0.160 4.160 14 C -0.012 4.012 15 N -0.339 5.339 16 C -0.450 4.450 17 H 0.095 0.905 18 C -0.225 4.225 19 N -0.569 5.569 20 Si 0.905 3.095 21 H -0.231 1.231 22 H -0.229 1.229 23 H -0.210 1.210 24 C 0.022 3.978 25 C -0.150 4.150 26 C -0.044 4.044 27 N -0.031 5.031 28 O 0.042 5.958 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.197 0.803 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.043 0.957 45 H 0.070 0.930 46 H 0.040 0.960 47 H 0.061 0.939 48 H 0.096 0.904 49 H 0.083 0.917 50 H 0.139 0.861 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -30.360 -8.887 -0.998 31.650 hybrid contribution -1.214 1.331 -0.292 1.825 sum -31.574 -7.555 -1.290 32.491 Atomic orbital electron populations 1.21767 0.94736 1.02310 1.02212 1.21572 0.96477 0.94874 1.03240 1.20295 0.83187 0.99168 1.05172 1.24484 0.96159 1.02905 0.85441 1.22419 0.89633 1.06867 1.01527 1.23538 0.96754 1.06939 0.90049 1.16997 0.81538 0.77415 0.86103 1.90786 1.86263 1.50456 1.12876 1.48005 1.05440 1.68352 1.10345 1.21864 0.81995 1.00200 0.96929 1.21652 1.00648 0.97951 0.94699 1.21129 0.94025 0.96960 0.95293 1.22660 0.95928 0.96270 1.01191 1.21991 0.94180 0.86631 0.98437 1.44872 1.02465 1.04886 1.81646 1.20111 0.83983 0.92014 1.48911 0.90522 1.25749 0.91442 1.06859 0.98454 1.70929 1.33374 1.06784 1.45834 0.83847 0.73805 0.75686 0.76136 1.23081 1.22930 1.21020 1.21514 0.84850 0.95531 0.95864 1.21668 0.94733 0.99119 0.99484 1.22621 1.04023 0.98894 0.78831 1.73926 0.96618 1.17159 1.15371 1.84806 1.11397 1.65818 1.33750 0.92201 0.92316 0.92365 0.91231 0.91197 0.88969 0.88176 0.80279 0.88903 0.90725 0.91799 0.89172 0.91394 0.91550 0.93577 0.95701 0.92951 0.95998 0.93897 0.90383 0.91671 0.86123 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 9.91 37.16 0.37 -0.04 16 2 C -0.12 -0.44 5.92 -26.73 -0.16 -0.60 16 3 C -0.04 -0.15 5.78 -27.88 -0.16 -0.31 16 4 C -0.03 -0.19 6.73 -35.35 -0.24 -0.43 16 5 C -0.18 -1.67 10.93 -39.07 -0.43 -2.10 16 6 C -0.01 -0.17 6.91 -82.52 -0.57 -0.74 16 7 C 0.59 8.50 7.71 -12.11 -0.09 8.41 16 8 O -0.53 -8.80 16.39 5.37 0.09 -8.71 16 9 N -0.59 -8.01 2.96 -173.51 -0.51 -8.53 16 10 C 0.11 1.56 6.11 -3.63 -0.02 1.54 16 11 C -0.11 -1.75 4.87 -27.01 -0.13 -1.88 16 12 C -0.07 -1.16 0.55 -153.99 -0.08 -1.25 16 13 C -0.12 -2.02 4.92 -25.24 -0.12 -2.14 16 14 C 0.11 2.44 4.20 -2.96 -0.01 2.43 16 15 N -0.61 -14.98 3.35 -170.17 -0.57 -15.55 16 16 C -0.32 -9.36 10.53 -15.06 -0.16 -9.51 16 17 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 18 C -0.03 -0.77 5.49 -17.43 -0.10 -0.87 16 19 N -0.93 -29.56 13.70 55.49 0.76 -28.80 16 20 Si 1.07 27.24 24.56 -169.99 -4.17 23.07 16 21 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 22 H -0.30 -7.42 6.91 56.52 0.39 -7.03 16 23 H -0.28 -6.54 5.24 56.52 0.30 -6.25 16 24 C 0.15 2.98 6.16 -2.75 -0.02 2.96 16 25 C -0.11 -1.48 4.84 -27.01 -0.13 -1.61 16 26 C 0.08 0.96 6.06 -3.63 -0.02 0.94 16 27 N -0.33 -3.67 8.57 33.29 0.29 -3.39 16 28 O 0.11 1.05 11.18 17.26 0.19 1.24 16 29 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.09 1.34 7.03 -51.93 -0.36 0.97 16 38 H 0.07 0.99 6.55 -51.93 -0.34 0.65 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 1.61 7.82 -51.93 -0.41 1.20 16 41 H 0.07 0.99 6.17 -51.93 -0.32 0.67 16 42 H 0.07 1.01 7.98 -51.93 -0.41 0.59 16 43 H 0.05 1.06 6.43 -51.93 -0.33 0.72 16 44 H 0.03 0.58 4.31 -51.93 -0.22 0.36 16 45 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 46 H 0.02 0.44 7.99 -51.93 -0.42 0.03 16 47 H 0.04 0.88 8.03 -51.93 -0.42 0.47 16 48 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 49 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.12 1.43 3.80 -70.78 -0.27 1.16 16 51 H 0.07 0.81 7.62 -51.93 -0.40 0.42 16 LS Contribution 387.51 15.07 5.84 5.84 Total: -1.00 -34.29 387.51 -8.41 -42.70 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -8.24 Total: -2.67 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -2.08 Total: -5.20 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.04 Total: -56.26 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.28 Total: -7.47 kcal Atomic # 14 Polarization: 27.24 SS G_CDS: -4.17 Total: 23.07 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.29 -8.41 -42.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035248668.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.315 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds