Wall clock time and date at job start Wed Apr 1 2020 05:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47400 * 2 1 4 4 C 1.50705 * 109.47273 * 180.02562 * 3 2 1 5 5 N 1.30616 * 125.42201 * 90.02549 * 4 3 2 6 6 C 1.33688 * 108.99168 * 179.74690 * 5 4 3 7 7 C 1.50706 * 126.27385 * 180.25518 * 6 5 4 8 8 C 1.36340 * 107.46044 * 0.37156 * 6 5 4 9 9 C 1.46714 * 126.65189 * 179.89828 * 8 6 5 10 10 O 1.21688 * 119.99922 * 352.18737 * 9 8 6 11 11 N 1.34776 * 120.00384 * 172.17745 * 9 8 6 12 12 C 1.46889 * 120.46283 * 172.60627 * 11 9 8 13 13 C 1.53361 * 108.74025 * 124.39567 * 12 11 9 14 14 C 1.52549 * 109.13009 * 52.25842 * 13 12 11 15 15 C 1.52963 * 114.06253 * 75.54076 * 14 13 12 16 16 N 1.47163 * 87.85368 * 139.44603 * 15 14 13 17 17 C 1.36935 * 136.00214 * 153.08555 * 16 15 14 18 18 H 1.07997 * 119.99878 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00021 * 179.97438 * 17 16 15 20 20 N 1.31613 * 119.99998 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99852 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47096 * 60.00606 * 21 19 17 23 23 H 1.48497 * 109.46990 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47482 * 300.00323 * 21 19 17 25 25 C 1.47175 * 87.99703 * 333.33667 * 16 15 14 26 26 C 1.52554 * 113.43211 * 302.67098 * 14 13 12 27 27 C 1.46886 * 120.45969 * 352.63755 * 11 9 8 28 28 O 1.33665 * 125.42107 * 269.99878 * 4 3 2 29 29 H 1.09004 * 109.46674 * 299.99705 * 1 2 3 30 30 H 1.09001 * 109.47528 * 59.99540 * 1 2 3 31 31 H 1.08998 * 109.47307 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47129 * 240.00059 * 2 1 3 33 33 H 1.09001 * 109.47528 * 120.00460 * 2 1 3 34 34 H 1.09004 * 109.46966 * 60.00474 * 3 2 1 35 35 H 1.09001 * 109.46890 * 300.00207 * 3 2 1 36 36 H 1.08999 * 109.47580 * 270.13984 * 7 6 5 37 37 H 1.09001 * 109.47109 * 30.13587 * 7 6 5 38 38 H 1.08998 * 109.47424 * 150.13316 * 7 6 5 39 39 H 1.08995 * 109.59601 * 4.61703 * 12 11 9 40 40 H 1.09004 * 109.71566 * 244.24086 * 12 11 9 41 41 H 1.09005 * 109.52146 * 292.36454 * 13 12 11 42 42 H 1.08997 * 109.58746 * 172.19405 * 13 12 11 43 43 H 1.08996 * 113.48739 * 24.69529 * 15 14 13 44 44 H 1.09000 * 113.49058 * 254.19258 * 15 14 13 45 45 H 0.96997 * 120.00037 * 180.02562 * 20 19 17 46 46 H 1.08996 * 113.48274 * 141.41385 * 25 16 15 47 47 H 1.08998 * 113.48824 * 271.92354 * 25 16 15 48 48 H 1.09004 * 109.53020 * 177.20903 * 26 14 13 49 49 H 1.08993 * 109.53127 * 297.42621 * 26 14 13 50 50 H 1.08998 * 109.59418 * 355.37759 * 27 11 9 51 51 H 1.08998 * 109.59080 * 115.82005 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 7 4.3037 1.4431 -1.0654 6 6 5.5861 1.4484 -0.6878 7 6 6.7846 1.4563 -1.6014 8 6 5.6112 1.4427 0.6754 9 6 6.8042 1.4435 1.5294 10 8 7.9072 1.3063 1.0340 11 7 6.6786 1.5962 2.8625 12 6 7.8434 1.4377 3.7433 13 6 8.0057 2.7127 4.5799 14 6 6.6808 3.0335 5.2645 15 6 6.3648 2.1369 6.4629 16 7 5.8644 3.3344 7.1566 17 6 4.9496 3.5916 8.1425 18 1 4.3993 2.7792 8.5937 19 6 4.7295 4.8964 8.5620 20 7 5.3997 5.8864 8.0117 21 14 3.4810 5.2471 9.9065 22 1 3.8760 4.5333 11.1473 23 1 3.4336 6.7080 10.1690 24 1 2.1405 4.7792 9.4716 25 6 6.7739 4.1351 6.3213 26 6 5.5193 3.2014 4.2898 27 6 5.3749 1.9230 3.4550 28 8 4.3222 1.4423 1.0883 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 1.9563 -0.8900 36 1 7.0770 0.4306 -1.8261 37 1 6.5322 1.9732 -2.5273 38 1 7.6113 1.9709 -1.1119 39 1 8.7380 1.2792 3.1412 40 1 7.6914 0.5840 4.4039 41 1 8.2902 3.5407 3.9305 42 1 8.7777 2.5592 5.3339 43 1 7.2509 1.7042 6.9273 44 1 5.5905 1.3971 6.2598 45 1 5.2462 6.7981 8.3050 46 1 6.3452 5.0839 5.9986 47 1 7.7711 4.2453 6.7472 48 1 4.5991 3.3789 4.8465 49 1 5.7163 4.0466 3.6305 50 1 4.6435 2.0843 2.6631 51 1 5.0487 1.1034 4.0953 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035835847.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:07 Heat of formation + Delta-G solvation = 41.057529 kcal Electronic energy + Delta-G solvation = -31590.413850 eV Core-core repulsion = 27493.347458 eV Total energy + Delta-G solvation = -4097.066392 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.66873 -40.29447 -38.81195 -36.21869 -35.72695 -35.18395 -32.61622 -31.95338 -31.00615 -30.47497 -28.70597 -27.70875 -26.62429 -24.90801 -23.86367 -23.38610 -22.77930 -21.97957 -21.49228 -21.04633 -20.10504 -18.17944 -17.15281 -16.87285 -16.69841 -16.36255 -16.16378 -15.44542 -14.99712 -14.93660 -14.74737 -14.65785 -13.99572 -13.81552 -13.77067 -13.69611 -13.41817 -13.38124 -13.02176 -12.65856 -12.58520 -12.36165 -12.27257 -12.18525 -12.05995 -11.76323 -11.72723 -11.20594 -11.18910 -11.10665 -11.07023 -10.90733 -10.86452 -10.82426 -10.41162 -10.24139 -10.06040 -9.74784 -9.64667 -9.25407 -9.01343 -8.81894 -8.47028 -6.88724 -5.78354 -3.10471 0.66395 2.15667 2.22366 2.91705 3.04359 3.37074 3.41432 3.42828 3.61406 4.35033 4.43715 4.48720 4.52811 4.61497 4.74537 4.98227 5.01670 5.07603 5.12165 5.19323 5.25646 5.31546 5.34939 5.36089 5.39715 5.45420 5.50570 5.59707 5.60457 5.65554 5.67477 5.75337 5.77454 5.82833 5.86818 5.93332 5.99577 6.12317 6.15862 6.25439 6.32142 6.46335 6.55401 6.59044 6.76875 6.79055 7.20337 7.23637 7.33598 7.44937 7.54716 7.94293 7.96104 9.02108 9.68839 10.63825 11.38969 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010528 B = 0.003032 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.986264 B = 9232.596785 C =11259.802027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.029 4.029 4 C 0.215 3.785 5 N -0.488 5.488 6 C 0.078 3.922 7 C -0.077 4.077 8 C -0.113 4.113 9 C 0.606 3.394 10 O -0.524 6.524 11 N -0.593 5.593 12 C 0.116 3.884 13 C -0.114 4.114 14 C -0.116 4.116 15 C 0.127 3.873 16 N -0.608 5.608 17 C -0.218 4.218 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.911 3.089 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.167 3.833 26 C -0.092 4.092 27 C 0.097 3.903 28 O -0.177 6.177 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.031 0.969 44 H 0.036 0.964 45 H 0.254 0.746 46 H 0.070 0.930 47 H 0.024 0.976 48 H 0.090 0.910 49 H 0.060 0.940 50 H 0.096 0.904 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.448 -10.775 -18.085 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.067 4.067 4 C 0.010 3.990 5 N -0.218 5.218 6 C -0.046 4.046 7 C -0.134 4.134 8 C -0.167 4.167 9 C 0.393 3.607 10 O -0.403 6.403 11 N -0.324 5.324 12 C -0.005 4.005 13 C -0.153 4.153 14 C -0.118 4.118 15 C 0.001 3.999 16 N -0.333 5.333 17 C -0.345 4.345 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.566 5.566 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.042 3.958 26 C -0.130 4.130 27 C -0.024 4.024 28 O -0.065 6.065 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.049 0.951 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.088 0.912 47 H 0.042 0.958 48 H 0.109 0.891 49 H 0.079 0.921 50 H 0.114 0.886 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.325 -10.624 -18.602 21.678 hybrid contribution -0.408 0.316 1.734 1.809 sum -3.734 -10.308 -16.868 20.118 Atomic orbital electron populations 1.21753 0.94379 1.02383 1.02377 1.21536 0.96728 0.94419 1.03292 1.20329 0.80725 0.99869 1.05799 1.26658 0.96508 0.96605 0.79216 1.70335 1.01511 1.19940 1.29964 1.22037 0.93473 0.97859 0.91243 1.20335 0.92147 1.03606 0.97315 1.22933 0.82430 1.16336 0.95008 1.16468 0.85396 0.77467 0.81370 1.90825 1.24197 1.51932 1.73369 1.48006 1.11490 1.67766 1.05149 1.21721 0.87992 0.98550 0.92267 1.21738 0.97944 0.96808 0.98794 1.22098 0.93585 1.01824 0.94275 1.22395 0.95993 0.91473 0.90031 1.45557 1.42668 1.01967 1.43145 1.18866 1.12192 0.92441 1.11023 0.90316 1.24771 1.00042 0.95493 1.00061 1.69813 1.43662 0.98770 1.44393 0.86224 0.80959 0.77043 0.81672 1.21227 1.21570 1.21089 1.22028 0.92663 0.94926 0.86222 1.21410 0.99735 0.95419 0.96457 1.22287 0.83405 0.98725 0.97999 1.84679 1.16310 1.69405 1.36108 0.92116 0.92270 0.92110 0.91047 0.91219 0.88234 0.87328 0.90049 0.90588 0.88917 0.89095 0.91029 0.91647 0.90470 0.95147 0.94600 0.93625 0.91205 0.95795 0.89144 0.92143 0.88632 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.15 0.37 -0.43 16 2 C -0.12 -0.81 5.92 -26.73 -0.16 -0.96 16 3 C -0.03 -0.22 5.84 -27.88 -0.16 -0.38 16 4 C 0.22 2.44 7.57 -12.79 -0.10 2.34 16 5 N -0.49 -6.28 11.26 -7.07 -0.08 -6.36 16 6 C 0.08 1.04 7.16 -82.47 -0.59 0.45 16 7 C -0.08 -0.85 9.80 36.01 0.35 -0.49 16 8 C -0.11 -1.58 6.80 -36.84 -0.25 -1.83 16 9 C 0.61 9.04 7.64 -12.84 -0.10 8.94 16 10 O -0.52 -8.52 14.32 5.20 0.07 -8.44 16 11 N -0.59 -8.43 2.94 -174.15 -0.51 -8.94 16 12 C 0.12 1.56 6.35 -3.64 -0.02 1.53 16 13 C -0.11 -1.67 5.30 -26.78 -0.14 -1.81 16 14 C -0.12 -2.05 0.84 -155.02 -0.13 -2.18 16 15 C 0.13 2.49 7.63 -8.20 -0.06 2.43 16 16 N -0.61 -15.10 3.55 -184.65 -0.66 -15.75 16 17 C -0.22 -5.98 10.74 -15.06 -0.16 -6.14 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -26.92 11.52 55.49 0.64 -26.28 16 21 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 25 C 0.17 3.82 6.54 -8.21 -0.05 3.76 16 26 C -0.09 -1.53 5.27 -26.77 -0.14 -1.67 16 27 C 0.10 1.37 6.06 -3.64 -0.02 1.35 16 28 O -0.18 -2.27 7.43 4.40 0.03 -2.23 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 1.09 6.66 -51.93 -0.35 0.74 16 39 H 0.09 1.20 6.98 -51.93 -0.36 0.84 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 43 H 0.03 0.59 8.06 -51.93 -0.42 0.17 16 44 H 0.04 0.67 7.53 -51.93 -0.39 0.28 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.07 1.79 7.11 -51.93 -0.37 1.42 16 47 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 48 H 0.09 1.71 7.95 -51.93 -0.41 1.30 16 49 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.10 1.29 4.15 -53.18 -0.22 1.07 16 51 H 0.07 1.00 7.60 -51.93 -0.39 0.61 16 LS Contribution 402.82 15.07 6.07 6.07 Total: -1.00 -32.17 402.82 -9.30 -41.46 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -8.37 Total: -0.91 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -1.47 Total: 4.62 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.61 Total: -57.34 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.11 Total: -10.68 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.17 -9.30 -41.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035835847.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.519 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds