Wall clock time and date at job start Wed Apr 1 2020 05:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47400 * 2 1 4 4 C 1.50705 * 109.47273 * 180.02562 * 3 2 1 5 5 N 1.30616 * 125.42201 * 90.02549 * 4 3 2 6 6 C 1.33688 * 108.99168 * 179.74690 * 5 4 3 7 7 C 1.50706 * 126.27385 * 180.25518 * 6 5 4 8 8 C 1.36340 * 107.46044 * 0.37156 * 6 5 4 9 9 C 1.46714 * 126.65189 * 179.89828 * 8 6 5 10 10 O 1.21688 * 119.99922 * 352.18737 * 9 8 6 11 11 N 1.34776 * 120.00384 * 172.17745 * 9 8 6 12 12 C 1.46889 * 120.46283 * 172.60627 * 11 9 8 13 13 C 1.53361 * 108.74025 * 124.39567 * 12 11 9 14 14 C 1.52549 * 109.13009 * 52.25842 * 13 12 11 15 15 C 1.52963 * 114.06253 * 75.54076 * 14 13 12 16 16 N 1.47163 * 87.85368 * 139.44603 * 15 14 13 17 17 C 1.36935 * 136.00214 * 153.08555 * 16 15 14 18 18 H 1.07997 * 119.99878 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00021 * 179.97438 * 17 16 15 20 20 N 1.31613 * 119.99998 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99852 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47096 * 60.00606 * 21 19 17 23 23 H 1.48497 * 109.46990 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47482 * 300.00323 * 21 19 17 25 25 C 1.47175 * 87.99703 * 333.33667 * 16 15 14 26 26 C 1.52554 * 113.43211 * 302.67098 * 14 13 12 27 27 C 1.46886 * 120.45969 * 352.63755 * 11 9 8 28 28 O 1.33665 * 125.42107 * 269.99878 * 4 3 2 29 29 H 1.09004 * 109.46674 * 299.99705 * 1 2 3 30 30 H 1.09001 * 109.47528 * 59.99540 * 1 2 3 31 31 H 1.08998 * 109.47307 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47129 * 240.00059 * 2 1 3 33 33 H 1.09001 * 109.47528 * 120.00460 * 2 1 3 34 34 H 1.09004 * 109.46966 * 60.00474 * 3 2 1 35 35 H 1.09001 * 109.46890 * 300.00207 * 3 2 1 36 36 H 1.08999 * 109.47580 * 270.13984 * 7 6 5 37 37 H 1.09001 * 109.47109 * 30.13587 * 7 6 5 38 38 H 1.08998 * 109.47424 * 150.13316 * 7 6 5 39 39 H 1.08995 * 109.59601 * 4.61703 * 12 11 9 40 40 H 1.09004 * 109.71566 * 244.24086 * 12 11 9 41 41 H 1.09005 * 109.52146 * 292.36454 * 13 12 11 42 42 H 1.08997 * 109.58746 * 172.19405 * 13 12 11 43 43 H 1.08996 * 113.48739 * 24.69529 * 15 14 13 44 44 H 1.09000 * 113.49058 * 254.19258 * 15 14 13 45 45 H 0.96997 * 120.00037 * 180.02562 * 20 19 17 46 46 H 1.08996 * 113.48274 * 141.41385 * 25 16 15 47 47 H 1.08998 * 113.48824 * 271.92354 * 25 16 15 48 48 H 1.09004 * 109.53020 * 177.20903 * 26 14 13 49 49 H 1.08993 * 109.53127 * 297.42621 * 26 14 13 50 50 H 1.08998 * 109.59418 * 355.37759 * 27 11 9 51 51 H 1.08998 * 109.59080 * 115.82005 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 7 4.3037 1.4431 -1.0654 6 6 5.5861 1.4484 -0.6878 7 6 6.7846 1.4563 -1.6014 8 6 5.6112 1.4427 0.6754 9 6 6.8042 1.4435 1.5294 10 8 7.9072 1.3063 1.0340 11 7 6.6786 1.5962 2.8625 12 6 7.8434 1.4377 3.7433 13 6 8.0057 2.7127 4.5799 14 6 6.6808 3.0335 5.2645 15 6 6.3648 2.1369 6.4629 16 7 5.8644 3.3344 7.1566 17 6 4.9496 3.5916 8.1425 18 1 4.3993 2.7792 8.5937 19 6 4.7295 4.8964 8.5620 20 7 5.3997 5.8864 8.0117 21 14 3.4810 5.2471 9.9065 22 1 3.8760 4.5333 11.1473 23 1 3.4336 6.7080 10.1690 24 1 2.1405 4.7792 9.4716 25 6 6.7739 4.1351 6.3213 26 6 5.5193 3.2014 4.2898 27 6 5.3749 1.9230 3.4550 28 8 4.3222 1.4423 1.0883 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 1.9563 -0.8900 36 1 7.0770 0.4306 -1.8261 37 1 6.5322 1.9732 -2.5273 38 1 7.6113 1.9709 -1.1119 39 1 8.7380 1.2792 3.1412 40 1 7.6914 0.5840 4.4039 41 1 8.2902 3.5407 3.9305 42 1 8.7777 2.5592 5.3339 43 1 7.2509 1.7042 6.9273 44 1 5.5905 1.3971 6.2598 45 1 5.2462 6.7981 8.3050 46 1 6.3452 5.0839 5.9986 47 1 7.7711 4.2453 6.7472 48 1 4.5991 3.3789 4.8465 49 1 5.7163 4.0466 3.6305 50 1 4.6435 2.0843 2.6631 51 1 5.0487 1.1034 4.0953 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035835847.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:06 Heat of formation + Delta-G solvation = 21.084737 kcal Electronic energy + Delta-G solvation = -31591.279935 eV Core-core repulsion = 27493.347458 eV Total energy + Delta-G solvation = -4097.932477 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.62282 -41.61644 -40.20170 -37.45970 -36.45273 -36.12276 -34.46051 -33.00942 -32.14934 -31.97236 -29.51432 -28.99595 -27.99912 -26.57619 -25.23471 -24.61934 -23.72171 -23.17809 -22.56838 -21.99360 -21.28631 -19.46610 -18.69093 -18.13285 -18.08882 -17.43297 -17.14832 -16.85043 -16.15785 -16.12111 -16.03613 -15.71438 -15.52090 -15.12672 -15.11051 -14.59527 -14.44837 -14.23050 -14.21536 -13.88444 -13.77344 -13.61458 -13.30401 -13.15541 -13.07770 -12.94525 -12.79096 -12.67883 -12.63957 -12.32776 -12.24450 -12.23466 -12.01746 -11.96426 -11.66052 -11.64227 -11.46720 -11.24948 -11.17682 -10.92495 -10.80668 -10.06480 -9.62846 -8.88998 -7.88805 -5.21486 -0.33078 1.20824 1.26560 1.45570 1.48582 1.54721 1.82604 1.97367 2.48249 2.77426 3.32548 3.34246 3.45237 3.56574 3.59909 3.79309 3.98526 4.00542 4.04253 4.06355 4.13737 4.26293 4.29395 4.38847 4.50031 4.56825 4.61145 4.65475 4.67516 4.69956 4.72991 4.79939 4.82116 4.87053 4.88983 4.91059 4.99277 5.06534 5.10794 5.17106 5.18390 5.24925 5.26620 5.29762 5.30305 5.43319 5.44629 5.56215 5.71187 5.94857 6.11536 6.47302 6.82284 6.92235 7.62369 8.64302 9.28557 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010528 B = 0.003032 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.986264 B = 9232.596785 C =11259.802027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.030 4.030 4 C 0.226 3.774 5 N -0.507 5.507 6 C 0.076 3.924 7 C -0.075 4.075 8 C -0.138 4.138 9 C 0.607 3.393 10 O -0.541 6.541 11 N -0.595 5.595 12 C 0.120 3.880 13 C -0.106 4.106 14 C -0.089 4.089 15 C 0.131 3.869 16 N -0.637 5.637 17 C -0.226 4.226 18 H 0.085 0.915 19 C -0.067 4.067 20 N -0.954 5.954 21 Si 0.976 3.024 22 H -0.279 1.279 23 H -0.297 1.297 24 H -0.274 1.274 25 C 0.163 3.837 26 C -0.086 4.086 27 C 0.111 3.889 28 O -0.183 6.183 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.045 0.955 44 H 0.050 0.950 45 H 0.247 0.753 46 H 0.032 0.968 47 H 0.013 0.987 48 H 0.064 0.936 49 H 0.055 0.945 50 H 0.104 0.896 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.460 -12.508 -18.923 23.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.068 4.068 4 C 0.021 3.979 5 N -0.236 5.236 6 C -0.048 4.048 7 C -0.132 4.132 8 C -0.193 4.193 9 C 0.395 3.605 10 O -0.422 6.422 11 N -0.325 5.325 12 C -0.001 4.001 13 C -0.145 4.145 14 C -0.090 4.090 15 C 0.006 3.994 16 N -0.363 5.363 17 C -0.354 4.354 18 H 0.103 0.897 19 C -0.260 4.260 20 N -0.603 5.603 21 Si 0.805 3.195 22 H -0.205 1.205 23 H -0.223 1.223 24 H -0.199 1.199 25 C 0.037 3.963 26 C -0.125 4.125 27 C -0.011 4.011 28 O -0.071 6.071 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.142 0.858 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.031 0.969 48 H 0.083 0.917 49 H 0.073 0.927 50 H 0.122 0.878 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.332 -12.401 -19.453 23.472 hybrid contribution -0.125 0.833 1.931 2.107 sum -4.457 -11.568 -17.522 21.464 Atomic orbital electron populations 1.21737 0.93089 1.02804 1.02962 1.21495 0.97715 0.93611 1.02682 1.20630 0.78097 1.00748 1.07290 1.27527 0.97726 0.94093 0.78523 1.70388 1.01484 1.21193 1.30551 1.22440 0.94273 0.96624 0.91450 1.20378 0.91088 1.04301 0.97401 1.22792 0.82688 1.18596 0.95173 1.16546 0.85501 0.77021 0.81449 1.90808 1.24932 1.52788 1.73652 1.48035 1.11619 1.67713 1.05175 1.21752 0.88116 0.98021 0.92196 1.21679 0.96152 0.97669 0.99018 1.21861 0.95613 0.98075 0.93462 1.22540 0.96542 0.90571 0.89746 1.45888 1.42746 1.04673 1.42966 1.19281 1.12418 0.92694 1.11000 0.89739 1.25595 1.02328 0.95460 1.02614 1.70018 1.45570 0.98667 1.46011 0.85182 0.79056 0.76225 0.79070 1.20522 1.22326 1.19930 1.22002 0.91402 0.94865 0.88069 1.21299 0.98049 0.96939 0.96178 1.22139 0.83733 0.97309 0.97901 1.84635 1.16044 1.69764 1.36668 0.91771 0.91454 0.91813 0.91665 0.91869 0.86757 0.85786 0.89023 0.89152 0.89811 0.88443 0.89309 0.91904 0.89289 0.93704 0.93167 0.94455 0.94932 0.96882 0.91690 0.92652 0.87828 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 71.98 0.71 -0.51 16 2 C -0.12 -1.33 5.92 30.59 0.18 -1.14 16 3 C -0.03 -0.38 5.84 29.85 0.17 -0.20 16 4 C 0.23 4.76 7.57 88.29 0.67 5.43 16 5 N -0.51 -12.33 11.26 -291.05 -3.28 -15.61 16 6 C 0.08 1.95 7.16 41.84 0.30 2.24 16 7 C -0.07 -1.56 9.80 71.24 0.70 -0.86 16 8 C -0.14 -3.72 6.80 24.04 0.16 -3.56 16 9 C 0.61 17.35 7.64 86.46 0.66 18.01 16 10 O -0.54 -16.99 14.32 -4.31 -0.06 -17.06 16 11 N -0.59 -15.88 2.94 -823.11 -2.42 -18.30 16 12 C 0.12 2.94 6.35 86.43 0.55 3.49 16 13 C -0.11 -2.96 5.30 30.57 0.16 -2.80 16 14 C -0.09 -3.09 0.84 -52.51 -0.04 -3.13 16 15 C 0.13 4.95 7.63 83.32 0.64 5.59 16 16 N -0.64 -31.89 3.55 -738.12 -2.62 -34.51 16 17 C -0.23 -12.47 10.74 84.03 0.90 -11.56 16 18 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 19 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 20 N -0.95 -57.65 11.52 21.65 0.25 -57.40 16 21 Si 0.98 45.30 29.55 68.60 2.03 47.33 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 C 0.16 7.61 6.54 83.31 0.55 8.16 16 26 C -0.09 -2.85 5.27 30.57 0.16 -2.69 16 27 C 0.11 2.94 6.06 86.43 0.52 3.47 16 28 O -0.18 -4.42 7.43 -7.17 -0.05 -4.47 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 34 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.08 1.91 6.66 -2.39 -0.02 1.89 16 39 H 0.10 2.34 6.98 -2.39 -0.02 2.33 16 40 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.09 2.30 8.10 -2.39 -0.02 2.28 16 43 H 0.05 1.61 8.06 -2.39 -0.02 1.59 16 44 H 0.05 1.76 7.53 -2.39 -0.02 1.75 16 45 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 46 H 0.03 1.75 7.11 -2.39 -0.02 1.73 16 47 H 0.01 0.65 8.09 -2.39 -0.02 0.63 16 48 H 0.06 2.49 7.95 -2.39 -0.02 2.47 16 49 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.10 2.65 4.15 -22.11 -0.09 2.56 16 51 H 0.08 2.08 7.60 -2.39 -0.02 2.06 16 Total: -1.00 -70.42 402.82 2.15 -68.27 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.84 Total: 15.15 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 7.46 Total: 16.60 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -8.07 Total: -125.82 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.11 Total: -21.53 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -70.42 2.15 -68.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035835847.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.359 kcal (2) G-P(sol) polarization free energy of solvation -70.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds