Wall clock time and date at job start Wed Apr 1 2020 05:17:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53003 * 109.47400 * 2 1
4 4 C 1.50705 * 109.47273 * 180.02562 * 3 2 1
5 5 N 1.30616 * 125.42201 * 90.02549 * 4 3 2
6 6 C 1.33688 * 108.99168 * 179.74690 * 5 4 3
7 7 C 1.50706 * 126.27385 * 180.25518 * 6 5 4
8 8 C 1.36340 * 107.46044 * 0.37156 * 6 5 4
9 9 C 1.46714 * 126.65189 * 179.89828 * 8 6 5
10 10 O 1.21688 * 119.99922 * 352.18737 * 9 8 6
11 11 N 1.34776 * 120.00384 * 172.17745 * 9 8 6
12 12 C 1.46889 * 120.46283 * 172.60627 * 11 9 8
13 13 C 1.53361 * 108.74025 * 124.39567 * 12 11 9
14 14 C 1.52549 * 109.13009 * 52.25842 * 13 12 11
15 15 C 1.52963 * 114.06253 * 75.54076 * 14 13 12
16 16 N 1.47163 * 87.85368 * 139.44603 * 15 14 13
17 17 C 1.36935 * 136.00214 * 153.08555 * 16 15 14
18 18 H 1.07997 * 119.99878 * 359.97438 * 17 16 15
19 19 C 1.38810 * 120.00021 * 179.97438 * 17 16 15
20 20 N 1.31613 * 119.99998 * 0.02562 * 19 17 16
21 21 Si 1.86801 * 119.99852 * 179.97438 * 19 17 16
22 22 H 1.48501 * 109.47096 * 60.00606 * 21 19 17
23 23 H 1.48497 * 109.46990 * 180.02562 * 21 19 17
24 24 H 1.48497 * 109.47482 * 300.00323 * 21 19 17
25 25 C 1.47175 * 87.99703 * 333.33667 * 16 15 14
26 26 C 1.52554 * 113.43211 * 302.67098 * 14 13 12
27 27 C 1.46886 * 120.45969 * 352.63755 * 11 9 8
28 28 O 1.33665 * 125.42107 * 269.99878 * 4 3 2
29 29 H 1.09004 * 109.46674 * 299.99705 * 1 2 3
30 30 H 1.09001 * 109.47528 * 59.99540 * 1 2 3
31 31 H 1.08998 * 109.47307 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.47129 * 240.00059 * 2 1 3
33 33 H 1.09001 * 109.47528 * 120.00460 * 2 1 3
34 34 H 1.09004 * 109.46966 * 60.00474 * 3 2 1
35 35 H 1.09001 * 109.46890 * 300.00207 * 3 2 1
36 36 H 1.08999 * 109.47580 * 270.13984 * 7 6 5
37 37 H 1.09001 * 109.47109 * 30.13587 * 7 6 5
38 38 H 1.08998 * 109.47424 * 150.13316 * 7 6 5
39 39 H 1.08995 * 109.59601 * 4.61703 * 12 11 9
40 40 H 1.09004 * 109.71566 * 244.24086 * 12 11 9
41 41 H 1.09005 * 109.52146 * 292.36454 * 13 12 11
42 42 H 1.08997 * 109.58746 * 172.19405 * 13 12 11
43 43 H 1.08996 * 113.48739 * 24.69529 * 15 14 13
44 44 H 1.09000 * 113.49058 * 254.19258 * 15 14 13
45 45 H 0.96997 * 120.00037 * 180.02562 * 20 19 17
46 46 H 1.08996 * 113.48274 * 141.41385 * 25 16 15
47 47 H 1.08998 * 113.48824 * 271.92354 * 25 16 15
48 48 H 1.09004 * 109.53020 * 177.20903 * 26 14 13
49 49 H 1.08993 * 109.53127 * 297.42621 * 26 14 13
50 50 H 1.08998 * 109.59418 * 355.37759 * 27 11 9
51 51 H 1.08998 * 109.59080 * 115.82005 * 27 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5471 1.4425 -0.0006
5 7 4.3037 1.4431 -1.0654
6 6 5.5861 1.4484 -0.6878
7 6 6.7846 1.4563 -1.6014
8 6 5.6112 1.4427 0.6754
9 6 6.8042 1.4435 1.5294
10 8 7.9072 1.3063 1.0340
11 7 6.6786 1.5962 2.8625
12 6 7.8434 1.4377 3.7433
13 6 8.0057 2.7127 4.5799
14 6 6.6808 3.0335 5.2645
15 6 6.3648 2.1369 6.4629
16 7 5.8644 3.3344 7.1566
17 6 4.9496 3.5916 8.1425
18 1 4.3993 2.7792 8.5937
19 6 4.7295 4.8964 8.5620
20 7 5.3997 5.8864 8.0117
21 14 3.4810 5.2471 9.9065
22 1 3.8760 4.5333 11.1473
23 1 3.4336 6.7080 10.1690
24 1 2.1405 4.7792 9.4716
25 6 6.7739 4.1351 6.3213
26 6 5.5193 3.2014 4.2898
27 6 5.3749 1.9230 3.4550
28 8 4.3222 1.4423 1.0883
29 1 -0.3633 0.5138 0.8901
30 1 -0.3634 0.5139 -0.8899
31 1 -0.3634 -1.0276 0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5139 0.8899
34 1 1.6767 1.9563 0.8901
35 1 1.6767 1.9563 -0.8900
36 1 7.0770 0.4306 -1.8261
37 1 6.5322 1.9732 -2.5273
38 1 7.6113 1.9709 -1.1119
39 1 8.7380 1.2792 3.1412
40 1 7.6914 0.5840 4.4039
41 1 8.2902 3.5407 3.9305
42 1 8.7777 2.5592 5.3339
43 1 7.2509 1.7042 6.9273
44 1 5.5905 1.3971 6.2598
45 1 5.2462 6.7981 8.3050
46 1 6.3452 5.0839 5.9986
47 1 7.7711 4.2453 6.7472
48 1 4.5991 3.3789 4.8465
49 1 5.7163 4.0466 3.6305
50 1 4.6435 2.0843 2.6631
51 1 5.0487 1.1034 4.0953
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001035835847.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:17:06
Heat of formation + Delta-G solvation = 21.084737 kcal
Electronic energy + Delta-G solvation = -31591.279935 eV
Core-core repulsion = 27493.347458 eV
Total energy + Delta-G solvation = -4097.932477 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-44.62282 -41.61644 -40.20170 -37.45970 -36.45273 -36.12276 -34.46051 -33.00942
-32.14934 -31.97236 -29.51432 -28.99595 -27.99912 -26.57619 -25.23471 -24.61934
-23.72171 -23.17809 -22.56838 -21.99360 -21.28631 -19.46610 -18.69093 -18.13285
-18.08882 -17.43297 -17.14832 -16.85043 -16.15785 -16.12111 -16.03613 -15.71438
-15.52090 -15.12672 -15.11051 -14.59527 -14.44837 -14.23050 -14.21536 -13.88444
-13.77344 -13.61458 -13.30401 -13.15541 -13.07770 -12.94525 -12.79096 -12.67883
-12.63957 -12.32776 -12.24450 -12.23466 -12.01746 -11.96426 -11.66052 -11.64227
-11.46720 -11.24948 -11.17682 -10.92495 -10.80668 -10.06480 -9.62846 -8.88998
-7.88805 -5.21486 -0.33078 1.20824 1.26560 1.45570 1.48582 1.54721
1.82604 1.97367 2.48249 2.77426 3.32548 3.34246 3.45237 3.56574
3.59909 3.79309 3.98526 4.00542 4.04253 4.06355 4.13737 4.26293
4.29395 4.38847 4.50031 4.56825 4.61145 4.65475 4.67516 4.69956
4.72991 4.79939 4.82116 4.87053 4.88983 4.91059 4.99277 5.06534
5.10794 5.17106 5.18390 5.24925 5.26620 5.29762 5.30305 5.43319
5.44629 5.56215 5.71187 5.94857 6.11536 6.47302 6.82284 6.92235
7.62369 8.64302 9.28557
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.010528 B = 0.003032 C = 0.002486
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2658.986264 B = 9232.596785 C =11259.802027
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.117 4.117
3 C -0.030 4.030
4 C 0.226 3.774
5 N -0.507 5.507
6 C 0.076 3.924
7 C -0.075 4.075
8 C -0.138 4.138
9 C 0.607 3.393
10 O -0.541 6.541
11 N -0.595 5.595
12 C 0.120 3.880
13 C -0.106 4.106
14 C -0.089 4.089
15 C 0.131 3.869
16 N -0.637 5.637
17 C -0.226 4.226
18 H 0.085 0.915
19 C -0.067 4.067
20 N -0.954 5.954
21 Si 0.976 3.024
22 H -0.279 1.279
23 H -0.297 1.297
24 H -0.274 1.274
25 C 0.163 3.837
26 C -0.086 4.086
27 C 0.111 3.889
28 O -0.183 6.183
29 H 0.063 0.937
30 H 0.066 0.934
31 H 0.063 0.937
32 H 0.065 0.935
33 H 0.063 0.937
34 H 0.114 0.886
35 H 0.124 0.876
36 H 0.091 0.909
37 H 0.090 0.910
38 H 0.083 0.917
39 H 0.097 0.903
40 H 0.089 0.911
41 H 0.062 0.938
42 H 0.089 0.911
43 H 0.045 0.955
44 H 0.050 0.950
45 H 0.247 0.753
46 H 0.032 0.968
47 H 0.013 0.987
48 H 0.064 0.936
49 H 0.055 0.945
50 H 0.104 0.896
51 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.460 -12.508 -18.923 23.117
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.155 4.155
3 C -0.068 4.068
4 C 0.021 3.979
5 N -0.236 5.236
6 C -0.048 4.048
7 C -0.132 4.132
8 C -0.193 4.193
9 C 0.395 3.605
10 O -0.422 6.422
11 N -0.325 5.325
12 C -0.001 4.001
13 C -0.145 4.145
14 C -0.090 4.090
15 C 0.006 3.994
16 N -0.363 5.363
17 C -0.354 4.354
18 H 0.103 0.897
19 C -0.260 4.260
20 N -0.603 5.603
21 Si 0.805 3.195
22 H -0.205 1.205
23 H -0.223 1.223
24 H -0.199 1.199
25 C 0.037 3.963
26 C -0.125 4.125
27 C -0.011 4.011
28 O -0.071 6.071
29 H 0.082 0.918
30 H 0.085 0.915
31 H 0.082 0.918
32 H 0.083 0.917
33 H 0.081 0.919
34 H 0.132 0.868
35 H 0.142 0.858
36 H 0.110 0.890
37 H 0.108 0.892
38 H 0.102 0.898
39 H 0.116 0.884
40 H 0.107 0.893
41 H 0.081 0.919
42 H 0.107 0.893
43 H 0.063 0.937
44 H 0.068 0.932
45 H 0.055 0.945
46 H 0.051 0.949
47 H 0.031 0.969
48 H 0.083 0.917
49 H 0.073 0.927
50 H 0.122 0.878
51 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -4.332 -12.401 -19.453 23.472
hybrid contribution -0.125 0.833 1.931 2.107
sum -4.457 -11.568 -17.522 21.464
Atomic orbital electron populations
1.21737 0.93089 1.02804 1.02962 1.21495 0.97715 0.93611 1.02682
1.20630 0.78097 1.00748 1.07290 1.27527 0.97726 0.94093 0.78523
1.70388 1.01484 1.21193 1.30551 1.22440 0.94273 0.96624 0.91450
1.20378 0.91088 1.04301 0.97401 1.22792 0.82688 1.18596 0.95173
1.16546 0.85501 0.77021 0.81449 1.90808 1.24932 1.52788 1.73652
1.48035 1.11619 1.67713 1.05175 1.21752 0.88116 0.98021 0.92196
1.21679 0.96152 0.97669 0.99018 1.21861 0.95613 0.98075 0.93462
1.22540 0.96542 0.90571 0.89746 1.45888 1.42746 1.04673 1.42966
1.19281 1.12418 0.92694 1.11000 0.89739 1.25595 1.02328 0.95460
1.02614 1.70018 1.45570 0.98667 1.46011 0.85182 0.79056 0.76225
0.79070 1.20522 1.22326 1.19930 1.22002 0.91402 0.94865 0.88069
1.21299 0.98049 0.96939 0.96178 1.22139 0.83733 0.97309 0.97901
1.84635 1.16044 1.69764 1.36668 0.91771 0.91454 0.91813 0.91665
0.91869 0.86757 0.85786 0.89023 0.89152 0.89811 0.88443 0.89309
0.91904 0.89289 0.93704 0.93167 0.94455 0.94932 0.96882 0.91690
0.92652 0.87828 0.89864
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.23 9.91 71.98 0.71 -0.51 16
2 C -0.12 -1.33 5.92 30.59 0.18 -1.14 16
3 C -0.03 -0.38 5.84 29.85 0.17 -0.20 16
4 C 0.23 4.76 7.57 88.29 0.67 5.43 16
5 N -0.51 -12.33 11.26 -291.05 -3.28 -15.61 16
6 C 0.08 1.95 7.16 41.84 0.30 2.24 16
7 C -0.07 -1.56 9.80 71.24 0.70 -0.86 16
8 C -0.14 -3.72 6.80 24.04 0.16 -3.56 16
9 C 0.61 17.35 7.64 86.46 0.66 18.01 16
10 O -0.54 -16.99 14.32 -4.31 -0.06 -17.06 16
11 N -0.59 -15.88 2.94 -823.11 -2.42 -18.30 16
12 C 0.12 2.94 6.35 86.43 0.55 3.49 16
13 C -0.11 -2.96 5.30 30.57 0.16 -2.80 16
14 C -0.09 -3.09 0.84 -52.51 -0.04 -3.13 16
15 C 0.13 4.95 7.63 83.32 0.64 5.59 16
16 N -0.64 -31.89 3.55 -738.12 -2.62 -34.51 16
17 C -0.23 -12.47 10.74 84.03 0.90 -11.56 16
18 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16
19 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16
20 N -0.95 -57.65 11.52 21.65 0.25 -57.40 16
21 Si 0.98 45.30 29.55 68.60 2.03 47.33 16
22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16
23 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16
24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16
25 C 0.16 7.61 6.54 83.31 0.55 8.16 16
26 C -0.09 -2.85 5.27 30.57 0.16 -2.69 16
27 C 0.11 2.94 6.06 86.43 0.52 3.47 16
28 O -0.18 -4.42 7.43 -7.17 -0.05 -4.47 16
29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16
30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16
31 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16
32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16
33 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16
34 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16
35 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16
36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16
37 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16
38 H 0.08 1.91 6.66 -2.39 -0.02 1.89 16
39 H 0.10 2.34 6.98 -2.39 -0.02 2.33 16
40 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16
41 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16
42 H 0.09 2.30 8.10 -2.39 -0.02 2.28 16
43 H 0.05 1.61 8.06 -2.39 -0.02 1.59 16
44 H 0.05 1.76 7.53 -2.39 -0.02 1.75 16
45 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16
46 H 0.03 1.75 7.11 -2.39 -0.02 1.73 16
47 H 0.01 0.65 8.09 -2.39 -0.02 0.63 16
48 H 0.06 2.49 7.95 -2.39 -0.02 2.47 16
49 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16
50 H 0.10 2.65 4.15 -22.11 -0.09 2.56 16
51 H 0.08 2.08 7.60 -2.39 -0.02 2.06 16
Total: -1.00 -70.42 402.82 2.15 -68.27
By element:
Atomic # 1 Polarization: 14.31 SS G_CDS: 0.84 Total: 15.15 kcal
Atomic # 6 Polarization: 9.13 SS G_CDS: 7.46 Total: 16.60 kcal
Atomic # 7 Polarization: -117.75 SS G_CDS: -8.07 Total: -125.82 kcal
Atomic # 8 Polarization: -21.41 SS G_CDS: -0.11 Total: -21.53 kcal
Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal
Total: -70.42 2.15 -68.27 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001035835847.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.359 kcal
(2) G-P(sol) polarization free energy of solvation -70.420 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.939 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.274 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.085 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds