Wall clock time and date at job start Wed Apr 1 2020 05:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46850 * 2 1 4 4 C 1.50703 * 109.46955 * 179.97438 * 3 2 1 5 5 O 1.33488 * 126.83236 * 269.95650 * 4 3 2 6 6 N 1.20663 * 113.15774 * 180.02562 * 5 4 3 7 7 C 1.30018 * 112.29938 * 359.69464 * 6 5 4 8 8 C 1.50703 * 127.33380 * 180.31316 * 7 6 5 9 9 C 1.37367 * 126.82389 * 89.99939 * 4 3 2 10 10 C 1.47391 * 128.56927 * 359.96897 * 9 4 3 11 11 O 1.21605 * 120.00454 * 90.26942 * 10 9 4 12 12 N 1.34784 * 119.99684 * 269.99867 * 10 9 4 13 13 C 1.46524 * 120.97925 * 359.97438 * 12 10 9 14 14 C 1.51782 * 110.13547 * 233.77469 * 13 12 10 15 15 C 1.49515 * 115.07055 * 318.39264 * 14 13 12 16 16 H 1.09002 * 105.91926 * 156.44970 * 15 14 13 17 17 C 1.52673 * 116.96651 * 40.04836 * 15 14 13 18 18 H 1.08997 * 112.03550 * 82.84984 * 17 15 14 19 19 C 1.56117 * 101.71105 * 202.84226 * 17 15 14 20 20 C 1.55099 * 101.08611 * 37.84537 * 19 17 15 21 21 N 1.46253 * 114.17998 * 272.08487 * 15 14 13 22 22 C 1.36933 * 125.96366 * 315.57428 * 21 15 14 23 23 H 1.08005 * 119.99819 * 359.97438 * 22 21 15 24 24 C 1.38807 * 120.00044 * 179.97438 * 22 21 15 25 25 N 1.31622 * 120.00144 * 359.97438 * 24 22 21 26 26 Si 1.86809 * 120.00065 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.46720 * 60.00143 * 26 24 22 28 28 H 1.48502 * 109.46823 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47081 * 300.00132 * 26 24 22 30 30 C 1.46686 * 120.97346 * 179.71861 * 12 10 9 31 31 H 1.08997 * 109.47541 * 299.99616 * 1 2 3 32 32 H 1.09004 * 109.46810 * 60.00304 * 1 2 3 33 33 H 1.09004 * 109.46885 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47510 * 239.99627 * 2 1 3 35 35 H 1.09004 * 109.46810 * 119.99696 * 2 1 3 36 36 H 1.09000 * 109.47343 * 60.00324 * 3 2 1 37 37 H 1.08994 * 109.47120 * 299.99534 * 3 2 1 38 38 H 1.08995 * 109.46846 * 270.16866 * 8 7 6 39 39 H 1.09000 * 109.46759 * 30.17416 * 8 7 6 40 40 H 1.08996 * 109.46822 * 150.16833 * 8 7 6 41 41 H 1.09008 * 109.35722 * 353.97186 * 13 12 10 42 42 H 1.08993 * 109.36328 * 113.56356 * 13 12 10 43 43 H 1.09004 * 108.36388 * 79.84546 * 14 13 12 44 44 H 1.08997 * 108.36271 * 196.94582 * 14 13 12 45 45 H 1.08997 * 111.09968 * 279.88335 * 19 17 15 46 46 H 1.09010 * 111.09577 * 155.79915 * 19 17 15 47 47 H 1.08997 * 110.35003 * 204.08426 * 20 19 17 48 48 H 1.09003 * 110.44103 * 81.84722 * 20 19 17 49 49 H 0.97002 * 120.00125 * 179.97438 * 25 24 22 50 50 H 1.08999 * 109.53214 * 241.06882 * 30 12 10 51 51 H 1.09002 * 109.53217 * 1.28145 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.3467 1.4435 1.0694 6 7 5.5193 1.4438 0.7846 7 6 5.7148 1.4366 -0.5007 8 6 7.0369 1.4280 -1.2241 9 6 4.3708 1.4424 -1.0986 10 6 3.9997 1.4415 -2.5250 11 8 3.8509 2.4942 -3.1153 12 7 3.8305 0.2738 -3.1766 13 6 4.0107 -1.0070 -2.4882 14 6 5.0020 -1.8721 -3.2450 15 6 4.8516 -1.8547 -4.7324 16 1 5.8245 -2.1375 -5.1346 17 6 4.5357 -0.5090 -5.3806 18 1 5.4328 0.0898 -5.5380 19 6 3.8790 -0.9516 -6.7260 20 6 3.0635 -2.1885 -6.2670 21 7 3.9109 -2.8471 -5.2511 22 6 3.8299 -4.1579 -4.8636 23 1 4.5014 -4.5405 -4.1091 24 6 2.8847 -4.9950 -5.4404 25 7 2.0660 -4.5287 -6.3595 26 14 2.7747 -6.7835 -4.9122 27 1 2.4763 -6.8530 -3.4592 28 1 1.6919 -7.4583 -5.6722 29 1 4.0678 -7.4607 -5.1850 30 6 3.4553 0.2480 -4.5945 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 7.3609 2.4536 -1.4009 39 1 7.7801 0.9117 -0.6164 40 1 6.9258 0.9125 -2.1779 41 1 4.3848 -0.8260 -1.4804 42 1 3.0525 -1.5231 -2.4285 43 1 6.0092 -1.5368 -2.9976 44 1 4.8929 -2.9006 -2.9009 45 1 4.6359 -1.2306 -7.4590 46 1 3.2241 -0.1732 -7.1178 47 1 2.8881 -2.8601 -7.1074 48 1 2.1160 -1.8778 -5.8267 49 1 1.4058 -5.1138 -6.7628 50 1 2.4966 -0.2578 -4.7085 51 1 3.3769 1.2685 -4.9694 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036712781.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:41 Heat of formation + Delta-G solvation = 44.332191 kcal Electronic energy + Delta-G solvation = -32880.998067 eV Core-core repulsion = 28784.073675 eV Total energy + Delta-G solvation = -4096.924392 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.97269 -40.17946 -38.28576 -35.86649 -35.23309 -34.63188 -32.84819 -31.92694 -31.83929 -29.47880 -28.88786 -27.95620 -27.26502 -25.73612 -24.50655 -23.29766 -22.71250 -22.05723 -20.54603 -20.18752 -19.62895 -18.47661 -17.82866 -17.42026 -16.57793 -16.39882 -16.04784 -15.51561 -15.26800 -14.83539 -14.59263 -14.20909 -14.01359 -13.93418 -13.68430 -13.44772 -13.35090 -13.07828 -12.92446 -12.79812 -12.65521 -12.55632 -12.18114 -11.85812 -11.75738 -11.53845 -11.49944 -11.31397 -11.25649 -11.07196 -10.86692 -10.79748 -10.59240 -10.24656 -10.20504 -10.12898 -9.99016 -9.86698 -9.71936 -9.58563 -9.39910 -8.68287 -8.37922 -6.87006 -5.73193 -3.12305 1.20095 1.81405 2.41803 2.71936 3.19266 3.35021 3.40154 3.41180 3.96861 4.09941 4.42169 4.53516 4.66468 4.73020 4.87199 4.97760 5.05623 5.18310 5.20778 5.26307 5.32345 5.37601 5.38103 5.40774 5.45134 5.47347 5.50400 5.54732 5.57349 5.65148 5.77231 5.84379 5.89061 5.89343 5.97812 6.03014 6.08315 6.13464 6.23902 6.27295 6.37849 6.52975 6.58430 6.66371 6.86047 6.91788 7.44353 7.50721 7.56795 7.79624 8.11447 8.15349 8.27826 9.14883 9.77287 10.43598 11.32664 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011387 B = 0.003734 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.269863 B = 7495.921687 C = 8186.029645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.043 4.043 4 C 0.017 3.983 5 O 0.096 5.904 6 N -0.357 5.357 7 C 0.054 3.946 8 C -0.077 4.077 9 C -0.237 4.237 10 C 0.598 3.402 11 O -0.537 6.537 12 N -0.588 5.588 13 C 0.119 3.881 14 C -0.134 4.134 15 C 0.173 3.827 16 H 0.009 0.991 17 C -0.106 4.106 18 H 0.077 0.923 19 C -0.143 4.143 20 C 0.156 3.844 21 N -0.592 5.592 22 C -0.223 4.223 23 H 0.076 0.924 24 C -0.006 4.006 25 N -0.920 5.920 26 Si 0.910 3.090 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.285 1.285 30 C 0.120 3.880 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.098 0.902 48 H 0.015 0.985 49 H 0.253 0.747 50 H 0.081 0.919 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.771 11.313 10.502 15.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.081 4.081 4 C -0.047 4.047 5 O 0.034 5.966 6 N -0.064 5.064 7 C -0.108 4.108 8 C -0.135 4.135 9 C -0.244 4.244 10 C 0.384 3.616 11 O -0.414 6.414 12 N -0.319 5.319 13 C -0.003 4.003 14 C -0.174 4.174 15 C 0.065 3.935 16 H 0.027 0.973 17 C -0.126 4.126 18 H 0.096 0.904 19 C -0.182 4.182 20 C 0.032 3.968 21 N -0.317 5.317 22 C -0.351 4.351 23 H 0.094 0.906 24 C -0.202 4.202 25 N -0.568 5.568 26 Si 0.741 3.259 27 H -0.213 1.213 28 H -0.216 1.216 29 H -0.212 1.212 30 C -0.001 4.001 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.116 0.884 48 H 0.033 0.967 49 H 0.063 0.937 50 H 0.100 0.900 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.355 11.642 11.185 16.316 hybrid contribution -0.257 -1.053 -0.332 1.134 sum 2.097 10.590 10.853 15.308 Atomic orbital electron populations 1.21738 0.94479 1.02549 1.02007 1.21604 0.96845 0.94326 1.03504 1.20374 0.82869 0.99689 1.05183 1.24622 0.95701 0.99272 0.85088 1.84512 1.11107 1.68010 1.32954 1.73604 0.95935 1.20293 1.16575 1.24729 0.96076 1.00979 0.88980 1.20224 0.89711 1.03811 0.99736 1.21902 0.92946 1.14253 0.95297 1.16883 0.77080 0.83730 0.83932 1.90789 1.51939 1.31041 1.67676 1.47919 1.66757 1.05476 1.11725 1.21315 1.00765 0.83223 0.95021 1.21233 0.97379 1.00797 0.98003 1.19414 0.94367 0.88891 0.90861 0.97336 1.22409 0.97608 0.95945 0.96663 0.90450 1.23297 0.99907 0.99767 0.95209 1.21917 0.90330 0.90435 0.94142 1.44461 1.38738 1.05268 1.43233 1.18905 1.14285 0.83815 1.18116 0.90584 1.24739 0.98099 0.98242 0.99163 1.69830 1.22872 1.34306 1.29750 0.86226 0.77248 0.84659 0.77791 1.21271 1.21584 1.21187 1.21862 0.98404 1.01541 0.78303 0.92528 0.92312 0.91898 0.90855 0.91113 0.88776 0.88306 0.89701 0.89917 0.89696 0.91201 0.90850 0.93212 0.89840 0.91865 0.91984 0.88369 0.96747 0.93671 0.90034 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.13 -1.17 5.92 -26.73 -0.16 -1.33 16 3 C -0.04 -0.41 5.66 -27.88 -0.16 -0.56 16 4 C 0.02 0.20 6.80 -34.62 -0.24 -0.03 16 5 O 0.10 1.22 11.06 18.66 0.21 1.43 16 6 N -0.36 -4.89 12.01 34.78 0.42 -4.48 16 7 C 0.05 0.72 7.55 -79.76 -0.60 0.12 16 8 C -0.08 -0.82 10.49 36.01 0.38 -0.44 16 9 C -0.24 -3.28 4.21 -102.89 -0.43 -3.72 16 10 C 0.60 9.33 7.49 -12.53 -0.09 9.24 16 11 O -0.54 -9.87 16.53 5.27 0.09 -9.78 16 12 N -0.59 -8.97 2.94 -175.18 -0.51 -9.48 16 13 C 0.12 1.79 5.74 -4.65 -0.03 1.76 16 14 C -0.13 -2.23 5.62 -29.07 -0.16 -2.39 16 15 C 0.17 3.29 2.63 -69.95 -0.18 3.11 16 16 H 0.01 0.18 8.06 -51.93 -0.42 -0.24 16 17 C -0.11 -1.78 3.70 -88.82 -0.33 -2.11 16 18 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 19 C -0.14 -2.53 6.46 -23.95 -0.15 -2.69 16 20 C 0.16 3.51 5.35 -2.23 -0.01 3.50 16 21 N -0.59 -13.76 3.32 -165.69 -0.55 -14.31 16 22 C -0.22 -5.72 9.59 -15.06 -0.14 -5.87 16 23 H 0.08 1.89 7.02 -52.48 -0.37 1.52 16 24 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 25 N -0.92 -25.46 10.18 55.49 0.56 -24.89 16 26 Si 0.91 21.09 29.55 -169.99 -5.02 16.06 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 29 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 30 C 0.12 1.94 5.57 -3.65 -0.02 1.92 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.82 6.79 -51.93 -0.35 0.46 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.99 8.11 -51.93 -0.42 0.56 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.96 6.31 -51.92 -0.33 0.63 16 42 H 0.07 1.18 7.49 -51.93 -0.39 0.79 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.51 6.64 -51.93 -0.34 1.16 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.06 0.97 7.98 -51.92 -0.41 0.56 16 47 H 0.10 2.53 6.09 -51.93 -0.32 2.22 16 48 H 0.01 0.35 7.10 -51.93 -0.37 -0.02 16 49 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 50 H 0.08 1.41 6.50 -51.93 -0.34 1.08 16 51 H 0.09 1.38 7.00 -51.93 -0.36 1.02 16 LS Contribution 398.08 15.07 6.00 6.00 Total: -1.00 -29.85 398.08 -9.09 -38.94 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.21 Total: 1.18 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -2.06 Total: -0.66 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.08 Total: -53.16 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.29 Total: -8.35 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.85 -9.09 -38.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036712781.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.269 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds