Wall clock time and date at job start Wed Apr 1 2020 05:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46850 * 2 1 4 4 C 1.50703 * 109.46955 * 179.97438 * 3 2 1 5 5 O 1.33488 * 126.83236 * 269.95650 * 4 3 2 6 6 N 1.20663 * 113.15774 * 180.02562 * 5 4 3 7 7 C 1.30018 * 112.29938 * 359.69464 * 6 5 4 8 8 C 1.50703 * 127.33380 * 180.31316 * 7 6 5 9 9 C 1.37367 * 126.82389 * 89.99939 * 4 3 2 10 10 C 1.47391 * 128.56927 * 359.96897 * 9 4 3 11 11 O 1.21605 * 120.00454 * 90.26942 * 10 9 4 12 12 N 1.34784 * 119.99684 * 269.99867 * 10 9 4 13 13 C 1.46524 * 120.97925 * 359.97438 * 12 10 9 14 14 C 1.51782 * 110.13547 * 233.77469 * 13 12 10 15 15 C 1.49515 * 115.07055 * 318.39264 * 14 13 12 16 16 H 1.09002 * 105.91926 * 156.44970 * 15 14 13 17 17 C 1.52673 * 116.96651 * 40.04836 * 15 14 13 18 18 H 1.08997 * 112.03550 * 82.84984 * 17 15 14 19 19 C 1.56117 * 101.71105 * 202.84226 * 17 15 14 20 20 C 1.55099 * 101.08611 * 37.84537 * 19 17 15 21 21 N 1.46253 * 114.17998 * 272.08487 * 15 14 13 22 22 C 1.36933 * 125.96366 * 315.57428 * 21 15 14 23 23 H 1.08005 * 119.99819 * 359.97438 * 22 21 15 24 24 C 1.38807 * 120.00044 * 179.97438 * 22 21 15 25 25 N 1.31622 * 120.00144 * 359.97438 * 24 22 21 26 26 Si 1.86809 * 120.00065 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.46720 * 60.00143 * 26 24 22 28 28 H 1.48502 * 109.46823 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47081 * 300.00132 * 26 24 22 30 30 C 1.46686 * 120.97346 * 179.71861 * 12 10 9 31 31 H 1.08997 * 109.47541 * 299.99616 * 1 2 3 32 32 H 1.09004 * 109.46810 * 60.00304 * 1 2 3 33 33 H 1.09004 * 109.46885 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47510 * 239.99627 * 2 1 3 35 35 H 1.09004 * 109.46810 * 119.99696 * 2 1 3 36 36 H 1.09000 * 109.47343 * 60.00324 * 3 2 1 37 37 H 1.08994 * 109.47120 * 299.99534 * 3 2 1 38 38 H 1.08995 * 109.46846 * 270.16866 * 8 7 6 39 39 H 1.09000 * 109.46759 * 30.17416 * 8 7 6 40 40 H 1.08996 * 109.46822 * 150.16833 * 8 7 6 41 41 H 1.09008 * 109.35722 * 353.97186 * 13 12 10 42 42 H 1.08993 * 109.36328 * 113.56356 * 13 12 10 43 43 H 1.09004 * 108.36388 * 79.84546 * 14 13 12 44 44 H 1.08997 * 108.36271 * 196.94582 * 14 13 12 45 45 H 1.08997 * 111.09968 * 279.88335 * 19 17 15 46 46 H 1.09010 * 111.09577 * 155.79915 * 19 17 15 47 47 H 1.08997 * 110.35003 * 204.08426 * 20 19 17 48 48 H 1.09003 * 110.44103 * 81.84722 * 20 19 17 49 49 H 0.97002 * 120.00125 * 179.97438 * 25 24 22 50 50 H 1.08999 * 109.53214 * 241.06882 * 30 12 10 51 51 H 1.09002 * 109.53217 * 1.28145 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.3467 1.4435 1.0694 6 7 5.5193 1.4438 0.7846 7 6 5.7148 1.4366 -0.5007 8 6 7.0369 1.4280 -1.2241 9 6 4.3708 1.4424 -1.0986 10 6 3.9997 1.4415 -2.5250 11 8 3.8509 2.4942 -3.1153 12 7 3.8305 0.2738 -3.1766 13 6 4.0107 -1.0070 -2.4882 14 6 5.0020 -1.8721 -3.2450 15 6 4.8516 -1.8547 -4.7324 16 1 5.8245 -2.1375 -5.1346 17 6 4.5357 -0.5090 -5.3806 18 1 5.4328 0.0898 -5.5380 19 6 3.8790 -0.9516 -6.7260 20 6 3.0635 -2.1885 -6.2670 21 7 3.9109 -2.8471 -5.2511 22 6 3.8299 -4.1579 -4.8636 23 1 4.5014 -4.5405 -4.1091 24 6 2.8847 -4.9950 -5.4404 25 7 2.0660 -4.5287 -6.3595 26 14 2.7747 -6.7835 -4.9122 27 1 2.4763 -6.8530 -3.4592 28 1 1.6919 -7.4583 -5.6722 29 1 4.0678 -7.4607 -5.1850 30 6 3.4553 0.2480 -4.5945 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 7.3609 2.4536 -1.4009 39 1 7.7801 0.9117 -0.6164 40 1 6.9258 0.9125 -2.1779 41 1 4.3848 -0.8260 -1.4804 42 1 3.0525 -1.5231 -2.4285 43 1 6.0092 -1.5368 -2.9976 44 1 4.8929 -2.9006 -2.9009 45 1 4.6359 -1.2306 -7.4590 46 1 3.2241 -0.1732 -7.1178 47 1 2.8881 -2.8601 -7.1074 48 1 2.1160 -1.8778 -5.8267 49 1 1.4058 -5.1138 -6.7628 50 1 2.4966 -0.2578 -4.7085 51 1 3.3769 1.2685 -4.9694 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036712781.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:40 Heat of formation + Delta-G solvation = 29.114904 kcal Electronic energy + Delta-G solvation = -32881.657938 eV Core-core repulsion = 28784.073675 eV Total energy + Delta-G solvation = -4097.584263 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.97038 -41.52632 -39.73883 -36.80908 -36.56194 -35.64015 -34.56559 -33.37559 -32.84960 -31.14235 -29.82613 -29.40218 -28.21032 -27.09594 -26.15753 -24.54390 -24.11435 -22.84472 -21.92563 -21.60139 -20.74428 -19.86721 -18.90707 -18.74509 -18.06941 -17.68356 -17.30626 -16.89585 -16.45253 -16.19092 -15.88817 -15.66283 -15.44016 -15.12945 -14.60633 -14.46975 -14.43979 -14.25876 -14.09418 -14.03366 -13.87600 -13.73649 -13.32272 -13.27734 -13.05737 -12.98029 -12.72403 -12.58568 -12.49799 -12.27242 -12.24539 -12.18128 -11.97859 -11.69349 -11.64657 -11.56510 -11.44281 -11.34474 -11.22306 -10.91903 -10.64783 -10.42338 -9.72010 -8.77883 -7.73519 -5.13225 0.21929 0.80894 1.21052 1.49429 1.50534 1.56712 1.67417 2.04804 2.52575 2.99794 3.16884 3.37111 3.45370 3.65632 3.74478 3.75993 3.86058 3.98116 4.01026 4.02481 4.07861 4.14055 4.21986 4.38643 4.42882 4.45542 4.55568 4.58426 4.61536 4.64478 4.70460 4.73259 4.76014 4.77009 4.85471 4.88488 4.92559 5.05120 5.09922 5.14830 5.18538 5.23041 5.28737 5.39107 5.40534 5.47617 5.55340 5.70360 5.87865 6.25586 6.34733 6.90784 7.13634 7.16396 7.85530 8.51240 9.30684 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011387 B = 0.003734 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.269863 B = 7495.921687 C = 8186.029645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.042 4.042 4 C 0.033 3.967 5 O 0.096 5.904 6 N -0.372 5.372 7 C 0.054 3.946 8 C -0.079 4.079 9 C -0.264 4.264 10 C 0.608 3.392 11 O -0.565 6.565 12 N -0.584 5.584 13 C 0.132 3.868 14 C -0.130 4.130 15 C 0.169 3.831 16 H -0.001 1.001 17 C -0.095 4.095 18 H 0.100 0.900 19 C -0.129 4.129 20 C 0.161 3.839 21 N -0.609 5.609 22 C -0.225 4.225 23 H 0.082 0.918 24 C -0.062 4.062 25 N -0.947 5.947 26 Si 0.969 3.031 27 H -0.279 1.279 28 H -0.298 1.298 29 H -0.281 1.281 30 C 0.127 3.873 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.086 0.914 47 H 0.061 0.939 48 H -0.007 1.007 49 H 0.244 0.756 50 H 0.065 0.935 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.715 12.382 12.181 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.080 4.080 4 C -0.031 4.031 5 O 0.036 5.964 6 N -0.080 5.080 7 C -0.108 4.108 8 C -0.136 4.136 9 C -0.272 4.272 10 C 0.395 3.605 11 O -0.444 6.444 12 N -0.314 5.314 13 C 0.009 3.991 14 C -0.169 4.169 15 C 0.062 3.938 16 H 0.017 0.983 17 C -0.114 4.114 18 H 0.119 0.881 19 C -0.168 4.168 20 C 0.036 3.964 21 N -0.334 5.334 22 C -0.354 4.354 23 H 0.099 0.901 24 C -0.255 4.255 25 N -0.597 5.597 26 Si 0.798 3.202 27 H -0.205 1.205 28 H -0.225 1.225 29 H -0.207 1.207 30 C 0.005 3.995 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.141 0.859 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.104 0.896 47 H 0.079 0.921 48 H 0.011 0.989 49 H 0.054 0.946 50 H 0.083 0.917 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.322 12.721 12.895 18.415 hybrid contribution -0.535 -1.355 -0.831 1.677 sum 2.787 11.365 12.064 16.807 Atomic orbital electron populations 1.21726 0.93635 1.02491 1.02737 1.21561 0.97534 0.94053 1.02795 1.20516 0.81153 0.99935 1.06370 1.25032 0.96546 0.97034 0.84450 1.84506 1.11009 1.67929 1.32963 1.73601 0.96329 1.21248 1.16807 1.25120 0.96714 1.00101 0.88885 1.20351 0.88888 1.04712 0.99660 1.21800 0.93948 1.16777 0.94628 1.16975 0.76075 0.83032 0.84415 1.90772 1.53190 1.31918 1.68543 1.47860 1.66558 1.05633 1.11383 1.21178 0.99697 0.82671 0.95553 1.21129 0.99220 1.00396 0.96193 1.19617 0.92628 0.89123 0.92443 0.98297 1.22378 0.98497 0.94985 0.95571 0.88144 1.23154 0.99650 0.98129 0.95869 1.21677 0.90519 0.91556 0.92682 1.44680 1.39293 1.05530 1.43866 1.19244 1.13633 0.85110 1.17369 0.90057 1.25454 0.98507 1.01711 0.99811 1.70071 1.23568 1.34995 1.31089 0.85297 0.76842 0.80604 0.77468 1.20501 1.22473 1.20711 1.21713 0.97415 1.01481 0.78890 0.90572 0.92823 0.92376 0.93020 0.90359 0.85914 0.88773 0.88671 0.88446 0.89714 0.89466 0.92265 0.90767 0.91372 0.91555 0.89587 0.92075 0.98865 0.94621 0.91670 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 71.98 0.71 -1.55 16 2 C -0.12 -2.10 5.92 30.59 0.18 -1.92 16 3 C -0.04 -0.70 5.66 29.85 0.17 -0.53 16 4 C 0.03 0.74 6.80 25.48 0.17 0.91 16 5 O 0.10 2.24 11.06 77.02 0.85 3.09 16 6 N -0.37 -9.43 12.01 -44.77 -0.54 -9.96 16 7 C 0.05 1.32 7.55 45.16 0.34 1.66 16 8 C -0.08 -1.48 10.49 71.24 0.75 -0.73 16 9 C -0.26 -6.86 4.21 -18.74 -0.08 -6.94 16 10 C 0.61 18.04 7.49 86.65 0.65 18.69 16 11 O -0.56 -19.98 16.53 -4.05 -0.07 -20.04 16 12 N -0.58 -17.06 2.94 -826.41 -2.43 -19.49 16 13 C 0.13 3.79 5.74 85.97 0.49 4.28 16 14 C -0.13 -4.13 5.62 29.08 0.16 -3.97 16 15 C 0.17 6.28 2.63 43.81 0.12 6.40 16 16 H 0.00 -0.03 8.06 -2.39 -0.02 -0.05 16 17 C -0.09 -3.02 3.70 -9.63 -0.04 -3.05 16 18 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 19 C -0.13 -4.47 6.46 32.40 0.21 -4.26 16 20 C 0.16 7.39 5.35 86.85 0.46 7.86 16 21 N -0.61 -28.61 3.32 -678.14 -2.25 -30.86 16 22 C -0.22 -11.66 9.59 84.03 0.81 -10.85 16 23 H 0.08 4.03 7.02 -2.91 -0.02 4.01 16 24 C -0.06 -3.35 5.49 84.86 0.47 -2.88 16 25 N -0.95 -54.28 10.18 21.65 0.22 -54.06 16 26 Si 0.97 43.96 29.55 68.60 2.03 45.99 16 27 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 28 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 29 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 30 C 0.13 3.95 5.57 86.53 0.48 4.43 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.05 1.12 6.79 -2.39 -0.02 1.10 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.73 8.11 -2.39 -0.02 1.71 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.09 2.23 6.31 -2.38 -0.02 2.22 16 42 H 0.06 1.89 7.49 -2.39 -0.02 1.88 16 43 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 44 H 0.07 2.40 6.64 -2.39 -0.02 2.39 16 45 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.09 2.57 7.98 -2.38 -0.02 2.55 16 47 H 0.06 3.29 6.09 -2.39 -0.01 3.27 16 48 H -0.01 -0.33 7.10 -2.39 -0.02 -0.34 16 49 H 0.24 13.81 8.31 -92.71 -0.77 13.04 16 50 H 0.07 2.26 6.50 -2.39 -0.02 2.25 16 51 H 0.09 2.82 7.00 -2.39 -0.02 2.81 16 Total: -1.00 -65.20 398.08 4.81 -60.39 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.93 Total: 17.41 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 6.06 Total: 7.54 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -4.99 Total: -114.38 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.79 Total: -16.95 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -65.20 4.81 -60.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036712781.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.505 kcal (2) G-P(sol) polarization free energy of solvation -65.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds