Wall clock time and date at job start Wed Apr 1 2020 05:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47435 * 2 1 4 4 C 1.53003 * 109.47138 * 239.99561 * 2 1 3 5 5 C 1.50707 * 109.46683 * 119.99952 * 2 1 3 6 6 O 1.34253 * 126.52517 * 241.70448 * 5 2 1 7 7 C 1.34052 * 108.22812 * 180.28580 * 6 5 2 8 8 N 1.29930 * 109.24040 * 359.73830 * 7 6 5 9 9 C 1.36073 * 108.47941 * 359.97438 * 8 7 6 10 10 C 1.47421 * 126.44693 * 179.97438 * 9 8 7 11 11 O 1.21612 * 120.00025 * 257.07199 * 10 9 8 12 12 N 1.34775 * 119.99682 * 77.08076 * 10 9 8 13 13 C 1.47213 * 121.36346 * 4.37594 * 12 10 9 14 14 C 1.52760 * 107.76114 * 238.09541 * 13 12 10 15 15 C 1.53152 * 110.83972 * 302.11933 * 14 13 12 16 16 H 1.09002 * 111.79971 * 289.67483 * 15 14 13 17 17 C 1.53937 * 110.88944 * 55.27139 * 15 14 13 18 18 H 1.09001 * 109.51152 * 188.81280 * 17 15 14 19 19 C 1.54198 * 102.21113 * 72.76350 * 17 15 14 20 20 C 1.54725 * 102.06316 * 37.57098 * 19 17 15 21 21 N 1.47201 * 107.24303 * 338.47896 * 20 19 17 22 22 C 1.36938 * 125.89063 * 176.30259 * 21 20 19 23 23 H 1.07999 * 120.00182 * 185.50134 * 22 21 20 24 24 C 1.38812 * 119.99826 * 5.50277 * 22 21 20 25 25 N 1.31617 * 120.00093 * 354.68888 * 24 22 21 26 26 Si 1.86801 * 119.99922 * 174.69281 * 24 22 21 27 27 H 1.48503 * 109.47159 * 94.99580 * 26 24 22 28 28 H 1.48498 * 109.47156 * 214.99531 * 26 24 22 29 29 H 1.48496 * 109.47173 * 334.99363 * 26 24 22 30 30 C 1.46715 * 121.35476 * 184.10412 * 12 10 9 31 31 H 1.08995 * 109.47295 * 304.63578 * 1 2 3 32 32 H 1.09001 * 109.46698 * 64.63503 * 1 2 3 33 33 H 1.09001 * 109.47283 * 184.63070 * 1 2 3 34 34 H 1.09001 * 109.47108 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.46618 * 299.99890 * 3 2 1 36 36 H 1.09001 * 109.46928 * 59.99719 * 3 2 1 37 37 H 1.08998 * 109.47412 * 307.16933 * 4 2 1 38 38 H 1.09002 * 109.46898 * 67.17114 * 4 2 1 39 39 H 1.09003 * 109.46698 * 187.16745 * 4 2 1 40 40 H 1.07998 * 125.37550 * 179.75250 * 7 6 5 41 41 H 1.09000 * 109.80006 * 357.66087 * 13 12 10 42 42 H 1.09001 * 109.79832 * 118.52921 * 13 12 10 43 43 H 1.08996 * 109.20108 * 62.46509 * 14 13 12 44 44 H 1.08997 * 109.20151 * 181.76990 * 14 13 12 45 45 H 1.08999 * 110.91212 * 155.76318 * 19 17 15 46 46 H 1.08994 * 110.91422 * 279.38328 * 19 17 15 47 47 H 1.09001 * 109.88327 * 97.89006 * 20 19 17 48 48 H 1.08998 * 109.88456 * 219.06392 * 20 19 17 49 49 H 0.96994 * 120.00207 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.13950 * 248.21418 * 30 12 10 51 51 H 1.08995 * 109.15075 * 7.35622 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0322 -0.7104 1.2306 6 8 2.7807 -0.1792 2.2104 7 6 3.0220 -1.1350 3.1188 8 7 2.4472 -2.2379 2.7428 9 6 1.8105 -2.0116 1.5617 10 6 1.0334 -2.9934 0.7836 11 8 1.5172 -3.5024 -0.2093 12 7 -0.2133 -3.3266 1.1724 13 6 -0.8641 -2.6603 2.3124 14 6 -1.2301 -3.7356 3.3338 15 6 -2.1448 -4.7927 2.7081 16 1 -3.1405 -4.3979 2.5061 17 6 -1.5015 -5.3985 1.4476 18 1 -2.2285 -6.0281 0.9346 19 6 -0.3855 -6.2805 2.0427 20 6 -1.0619 -6.8428 3.3157 21 7 -2.1685 -5.9348 3.6590 22 6 -3.0649 -6.1115 4.6791 23 1 -3.8955 -5.4306 4.7922 24 6 -2.9058 -7.1658 5.5679 25 7 -1.9564 -8.0557 5.3702 26 14 -4.0393 -7.3217 7.0446 27 1 -5.1617 -8.2357 6.7127 28 1 -3.2790 -7.8695 8.1966 29 1 -4.5782 -5.9840 7.3983 30 6 -0.9793 -4.3642 0.4731 31 1 -0.3633 0.5840 0.8455 32 1 -0.3633 0.4402 -0.9286 33 1 -0.3634 -1.0243 0.0830 34 1 3.1301 1.4424 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.5758 -1.7053 -1.3156 38 1 1.7852 -0.1388 -2.1346 39 1 3.1224 -0.8337 -1.1873 40 1 3.6024 -1.0082 4.0207 41 1 -0.1777 -1.9426 2.7616 42 1 -1.7658 -2.1489 1.9754 43 1 -0.3190 -4.2159 3.6907 44 1 -1.7429 -3.2707 4.1757 45 1 -0.1177 -7.0844 1.3571 46 1 0.4886 -5.6820 2.2988 47 1 -1.4497 -7.8422 3.1188 48 1 -0.3424 -6.8764 4.1338 49 1 -1.8455 -8.7926 5.9911 50 1 -1.8188 -3.9006 -0.0451 51 1 -0.3351 -4.8528 -0.2578 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036864948.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:10 Heat of formation + Delta-G solvation = 16.644348 kcal Electronic energy + Delta-G solvation = -32942.264633 eV Core-core repulsion = 28844.139606 eV Total energy + Delta-G solvation = -4098.125027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.60465 -40.15887 -38.26050 -37.16831 -35.26008 -34.85359 -32.56752 -31.36981 -30.17461 -29.22969 -28.21801 -27.68861 -27.53980 -25.43453 -24.32006 -23.13846 -22.87071 -22.59435 -20.57308 -19.98268 -19.59305 -18.35915 -17.68091 -17.01218 -16.80058 -16.40097 -15.84803 -15.56853 -15.06591 -14.73949 -14.58700 -14.33850 -14.15760 -13.84202 -13.72733 -13.66068 -13.09324 -12.84475 -12.73150 -12.61922 -12.56044 -12.05196 -11.93068 -11.87870 -11.73937 -11.60098 -11.39955 -11.38194 -11.28742 -11.17655 -11.02443 -10.79669 -10.70776 -10.64839 -10.09531 -10.07117 -9.85580 -9.71815 -9.57950 -9.55513 -8.98938 -8.59126 -8.44990 -6.80955 -5.68401 -3.01271 1.15694 2.21366 2.40426 2.57767 3.07446 3.40711 3.45969 3.48246 3.99416 4.25288 4.38569 4.50076 4.53590 4.71575 4.80071 5.04471 5.16108 5.23251 5.30179 5.33757 5.37833 5.40200 5.44845 5.47160 5.49788 5.57657 5.60960 5.61741 5.62969 5.69869 5.81432 5.83224 5.92968 5.93638 5.96201 6.01093 6.09826 6.12845 6.28571 6.34778 6.42898 6.58747 6.64736 6.78927 6.93276 7.13643 7.42950 7.46017 7.59581 7.70720 7.87120 8.14055 8.27688 9.23966 9.84165 10.52880 11.43226 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018406 B = 0.003050 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.851176 B = 9178.363237 C = 9568.873018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.016 3.984 3 C -0.142 4.142 4 C -0.151 4.151 5 C 0.014 3.986 6 O -0.196 6.196 7 C 0.169 3.831 8 N -0.450 5.450 9 C -0.045 4.045 10 C 0.610 3.390 11 O -0.530 6.530 12 N -0.587 5.587 13 C 0.112 3.888 14 C -0.141 4.141 15 C 0.167 3.833 16 H 0.060 0.940 17 C -0.113 4.113 18 H 0.081 0.919 19 C -0.136 4.136 20 C 0.181 3.819 21 N -0.601 5.601 22 C -0.227 4.227 23 H 0.076 0.924 24 C -0.007 4.007 25 N -0.919 5.919 26 Si 0.908 3.092 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.127 3.873 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.254 0.746 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.045 0.955 48 H 0.038 0.962 49 H 0.251 0.749 50 H 0.066 0.934 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.235 19.486 -11.190 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 C -0.200 4.200 4 C -0.208 4.208 5 C -0.041 4.041 6 O -0.082 6.082 7 C -0.058 4.058 8 N -0.179 5.179 9 C -0.166 4.166 10 C 0.396 3.604 11 O -0.407 6.407 12 N -0.319 5.319 13 C -0.012 4.012 14 C -0.182 4.182 15 C 0.059 3.941 16 H 0.078 0.922 17 C -0.133 4.133 18 H 0.100 0.900 19 C -0.174 4.174 20 C 0.056 3.944 21 N -0.325 5.325 22 C -0.355 4.355 23 H 0.094 0.906 24 C -0.204 4.204 25 N -0.566 5.566 26 Si 0.739 3.261 27 H -0.218 1.218 28 H -0.217 1.217 29 H -0.207 1.207 30 C 0.004 3.996 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.270 0.730 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.084 0.916 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.471 18.456 -11.174 22.832 hybrid contribution -0.362 0.369 1.041 1.162 sum 7.109 18.825 -10.134 22.530 Atomic orbital electron populations 1.22021 0.92038 1.03278 1.02992 1.19259 0.96098 0.95217 0.87864 1.21881 1.01656 0.93742 1.02679 1.22125 1.02008 1.02011 0.94669 1.23501 0.96174 0.92539 0.91877 1.84319 1.54607 1.41322 1.27972 1.28088 1.01223 0.80719 0.95810 1.70907 1.10253 1.26680 1.10030 1.21300 1.05821 0.93938 0.95541 1.16675 0.80510 0.79977 0.83227 1.90768 1.70010 1.53481 1.26439 1.47970 1.14161 1.37610 1.32157 1.21827 0.96808 0.95675 0.86863 1.22500 1.01868 0.96414 0.97369 1.21162 0.95349 0.88936 0.88636 0.92228 1.21971 0.98746 0.96520 0.96096 0.90035 1.22755 0.97185 0.98192 0.99286 1.21174 0.89093 0.92943 0.91197 1.44925 1.33253 1.20786 1.33503 1.19026 1.03662 1.10210 1.02629 0.90570 1.24802 0.98741 0.97762 0.99064 1.69980 1.34191 1.14858 1.37565 0.86161 0.79661 0.77542 0.82755 1.21781 1.21744 1.20714 1.21182 0.95147 0.88415 0.94810 0.91838 0.90770 0.91648 0.92012 0.91365 0.91974 0.89888 0.91323 0.92204 0.73018 0.91095 0.91293 0.91040 0.91450 0.92439 0.92502 0.93639 0.94379 0.93829 0.91604 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.39 37.16 0.31 -0.96 16 2 C 0.02 0.15 0.80 -155.66 -0.12 0.03 16 3 C -0.14 -1.04 8.07 37.16 0.30 -0.75 16 4 C -0.15 -1.52 8.20 37.16 0.30 -1.21 16 5 C 0.01 0.17 5.72 -35.08 -0.20 -0.03 16 6 O -0.20 -2.12 10.19 6.51 0.07 -2.05 16 7 C 0.17 1.77 13.19 51.96 0.69 2.45 16 8 N -0.45 -6.64 11.31 -11.48 -0.13 -6.77 16 9 C -0.05 -0.66 4.70 -83.02 -0.39 -1.05 16 10 C 0.61 9.79 5.30 -12.52 -0.07 9.72 16 11 O -0.53 -9.62 14.51 5.27 0.08 -9.55 16 12 N -0.59 -8.77 2.36 -175.32 -0.41 -9.18 16 13 C 0.11 1.58 6.02 -3.78 -0.02 1.56 16 14 C -0.14 -2.52 5.22 -26.78 -0.14 -2.66 16 15 C 0.17 3.25 3.62 -66.18 -0.24 3.01 16 16 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 17 C -0.11 -1.97 2.89 -90.32 -0.26 -2.23 16 18 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 19 C -0.14 -2.71 5.90 -25.20 -0.15 -2.86 16 20 C 0.18 4.46 5.08 -2.75 -0.01 4.45 16 21 N -0.60 -14.92 2.88 -161.78 -0.47 -15.39 16 22 C -0.23 -6.20 10.30 -15.06 -0.16 -6.36 16 23 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 24 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 25 N -0.92 -27.20 10.39 55.49 0.58 -26.63 16 26 Si 0.91 22.09 29.56 -169.99 -5.02 17.06 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 30 C 0.13 1.86 5.87 -4.74 -0.03 1.83 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.68 5.80 -51.93 -0.30 0.38 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 1.04 5.19 -51.93 -0.27 0.78 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 40 H 0.25 1.33 8.06 -52.49 -0.42 0.90 16 41 H 0.07 0.99 6.38 -51.93 -0.33 0.66 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.50 6.92 -51.93 -0.36 1.14 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.06 1.18 7.41 -51.93 -0.38 0.80 16 47 H 0.05 1.25 7.42 -51.93 -0.39 0.86 16 48 H 0.04 1.06 7.53 -51.93 -0.39 0.67 16 49 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 50 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.09 1.36 7.06 -51.93 -0.37 1.00 16 LS Contribution 391.02 15.07 5.89 5.89 Total: -1.00 -33.56 391.02 -7.96 -41.52 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -8.25 Total: 0.45 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -0.28 Total: 4.65 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.43 Total: -57.97 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.14 Total: -11.60 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.56 -7.96 -41.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036864948.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.160 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds